rna2389, rna2389 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2389
Unique Name	rna2389
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1083
Alignment location	CM002459.1:267222..269894 +

Link to JBrowse

Properties


Property Name	Value
Product	gtp-binding protein
Orig transcript id	gnl\|cribi\|Naga_100004g20.9198.mrna
Orig protein id	gnl\|cribi\|Naga_100004g20.9198
Gene	PEngA
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:267222..269894 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
PEngA	gene2283	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2389	rna2389-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28267.1	cds2381	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:267222..269894+
coding sequence from alignment at CM002459.1:267222..269894+

mRNA sequence

>rna2389 ID=rna2389|Name=rna2389|organism=Nannochloropsis gaditana|type=mRNA|length=1083bp
ATGAAGAGGATTGTCTTGATGTGCGCTCTAGTGATGCTTCTCAGGTCTGC
TTCAGCATTTACTACGCGAGCTCTTGTGTCGGGTACGCAAAAGTCTCGAA
TGACTGCTAGAAAAGCACTTTCTGTCACTCGACATGGCTCTAGTTTGACA
CGGAAGAGGCGTCATCAAGGGATCGATCGCGTGCCTTTTTTGAATCAAGG
GCTAGCTCAAGCAGCACACACACGCTTGTTCAGTACCACTGAGGACACGG
CTGCTCCTTCCACGACGTCCGCTTCGACGGAAGAGGAGCTGCCGCAGCTC
CTGCTTCACTGGTCAGACAGCGCCAAGACCTCGCTCCGCGTCTCTTGGAC
GGACACCCCTTCCTCCACCACTCCCTCGCATGCCTACCGCATTGACTACT
CGCGGGATGGGGTTCCAAACCGTCTCACCCTGGGGGGGACCTCGAGGGAG
GCTATGATTCGAGGCTTGCATGCCGGGAGCCAGTACGACGTGGCCGTCGT
CCGTGTGGAGAGGGAGGGTCTGGCGGAGAAGGTGGTGGGAAGGGCGCGTC
TGGAGACGGGCAAGGTCGTGGAGGCGCCCAAAGGGGAACTCACGGAGCTC
TCGCGGTTGGAGATTCGCACTGGAAAAATCCTGGAAATTTCCCGGCATCC
GGAGGCAGACGGGCTTTACGTGGAGAAAATTGACCTCGGCGAAGCGGACG
GCCCCCGTACCATCGTCTCCGGACTGGTCAAGTACCAGACGGAAGAGGAG
CTTTTGGGGCGGGAAGTGGTTGTGCTCGCAAACCTGAAGCCCCGCGCACT
CAAAGGCATCACCTCGCACGGCATGCTCCTCTGCGCCAGCAACGAGGACC
ACACGGTGGTCAAGCCTCTCTCTCCGCCCCCCGGCGTTGCTCTCGGGGAA
CTCATCACCTTCGAGGGCCACAGGGCCGCGCCCGAACCCCCTGGGAACCG
GGCGGGCAAGGCTTTCGACCGAGTGGCAGAGGAACTGGGGGCAGGGGAGG
ACATGATTGCCACCTACAAGGGAATACCCTTCATGACCAGCAAAGGTCCC
GTCACGACTGGGATGGCCGGGAGCATTTCATAG

protein sequence of rna2389

>rna2389-protein ID=rna2389-protein|Name=rna2389|organism=Nannochloropsis gaditana|type=polypeptide|length=683bp
MHFCQPSVPPSGSDNWRLRPRSRPGMAHRQPFHVRFFISVAACAAWTGRY
SSVQGFAPPARPLHTKIEGMHCHVQPLSTAQSFSVHREQPHLDRTPKRKL
TLLTMARGNSGGRSTGKGKQRGRKDTTAPGSPPSSDSSFPSSTRGDFEEE
GSGDIDDDVDALMDDEGDDYVFNPADFPLLEGEIDFFGDLDGLEETEESR
VLPGAQPLDTSGGITPKKKAVKLPVLAVIGRPNVGKSTIVNRLCRTMSTE
PDAIVYDYEGVTRDRIYRKAEWNGRVFEVVDTGGLIFDEDQDNLFAPQIR
EQALLALEESVAAILVVDGQVGVTTLDEEVAKFLRLQKNKPIFVAVNKCE
TPNMGEAMASMFWKLGLGEPFPVSGLHGTGVAEMLERMLPHIYEVEEAER
EEAIKVAIVGRPNVGKSSLLNRLYGKERAIVSDVAGTTRDAVDALVEVNG
KSYRFIDTAGIRRRKKVEYGNEFLMVNRALKAVRRADVVLLVVDVVEGIN
DQDKILAQRIAEDGRACVIVANKWDAVEKDDRTFNEAVVYVKEELFAVSW
ADVLFTSALTGQRCHKIFDAIDKASAAHRQRVKTSILNEVLGEALVWQRP
PTVKSSQQGRVYYCNQVATEPPSVVVFCNNPKLFPDSYKRYLDRKFRESL
DLTGTPIRWYFRGKKLRQLAKQGSPVPYGMPGS

mRNA from alignment at CM002459.1:267222..269894+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2389 ID=rna2389|Name=rna2389|organism=Nannochloropsis gaditana|type=mRNA|length=2673bp|location=Sequence derived from alignment at CM002459.1:267222..269894+ (Nannochloropsis gaditana)
AGACAAGGAATTAAATGGCCCCGGCCCTTCTAAACTTCAATTACATCGTt
tttggacgaggagaaagcgtTTCTTTCATCCACGTGATATACACGCATGC
TCCACAACAGGATACGCAAAGAGGGATATGCATTTTTGCCAGCCATCCGT
TCCTCCCAGTGGTTCAGATAACTGGAGGCTACGGCCACGCTCCAGGCCTG
GCATGGCACATCGACAGCCCTTTCATGTCAGATTTTTCATATCAGTGGCG
GCCTGTGCGGCTTGGACGGGTAGATACTCGAGCGTACAAGGTTTTGCGCC
ACCTGCAAGGCCACTACACACAAAAATTGAGGGGATGCACTGTCACGTCC
AGGTAGGGGAGGCAGCTCTTCAATTCCATGTTGCCGTCATGCCGGCGGAC
TTATACCCAGCGCTGTATTTTCGTAAAGTACTTGGTGTTAAATTCTCGGG
CTTCTCTTATTTTTAGCGTACCATATTTATGCTGGCAGTGCTGCAATTTT
CCCATTATTCACACGTGGATGCGCACAAATATTTTTCGCACGCCCTACCT
GAGACAGCCTCTGTCCACCGCTCAGAGTTTTTCCGTGCACCGTGAGCAAC
CACACCTGGACCGGACACCAAAAAGAAAATTGACCCTTCTGACAATGGCT
CGAGGCAACAGTGGCGGAAGAAGCACGGGGAAGGGTAAACAGCGGGGCAG
GAAAGACACCACAGCGCCGGGTAGCCCGCCATCATCAGactcctcctttc
cgagcAGCACCCGCGGCGAttttgaggaggagggcagcgggGACATTGAC
GACGATGTCGATGCCCtgatggacgacgagggggacgacTACGTCTTCAA
TCCTGCAGACTTTCCCCTACTGGAAGGGGAAATCGATTTCTTCGGCGACT
TGGATGGCttggaggaaacggaggaaTCTCGCGTCCTGCCAGGCGCTCAG
CCACTGGATACATCGGGAGGTATCACGCCTAAGAAGAAGGCAGTAAAACT
GCCGGTGCTTGCCGTGATTGGGCGGCCCAACGTTGGGAAATCTACGATCG
TGAATCGGCTCTGCCGGACCATGAGCACGGAGCCGGACGCCATAGTCTAC
GACTACGAGGGCGTGACTCGCGACAGGATATATCGGAAAGCGGAATGGAA
CGGCCGAGTCTTCGAGGTGGTGGACACGGGGGGGCTGATCTTCGACGAAG
ACCAGGACAACTTGTTCGCCCCCCAAATCCGCGAACAGGCTCTTCTGGCT
CTGGAGGAGTCGGTGGCGGCCATTTTGGTGGTGGACGGGCAGGTGGGGGT
CACCAccttggacgaggaagtcgcCAAATTTCTCCGGCTCCAGAAGAACA
AGCCGATCTTCGTGGCCGTGAACAAGTGCGAGACGCCCAACATgggggag
gccatggccagcATGTTCTGGAAACTGGGTCTGGGCGAGCCGTTCCCGGT
CAGCGGACTGCACGGGACCGGGGTGGCGGAGATGTTGGAGAGGATGCTGC
CGCACATCtacgaggtggaggaagcggagcgggaggaggcaatcAAGGTG
GCGATCGTGGGGAGACCGAACGTGGGAAAGTCCTCGTTGCTGAACCGGCT
CTATGGGAAGGAGCGCGCGATCGTCTCAGACGTGGCAGGCACCACACGGG
ATGCGGTAGACgccttggtggaggtgaaTGGGAAGAGCTACCGCTTCATC
GACACGGCGGGGATCCGACGCCGGAAGAAAGTCGAGTACGGGAACGAGTT
CCTGATGGTGAATCGGGCCTTGAAAGCCGTGCGGCGGGCGGACGTGGTCT
TGCTCGTGGtggatgtggtggagggaatCAACGACCAGGACAAGATCCTG
GCGCAGCGCATCGCGGAAGACGGGCGGGCCTGCGTCATTGTCGCCAACAA
GTGGGACGCAGTGGAAAAGGATGACAGGACATTCAACGAGGCGGTCGTGT
ACGTCAAGGAAGAGCTGTTCGCGGTGAGTTGGGCGGACGTGCTCTTCACT
TCGGCCTTGACCGGCCAGCGATGCCACAAGATCTTCGACGCCATCGATAA
AGCCTCGGCTGCCCACCGTCAACGGGTGAAGACGAGCATTTTGAACGAGG
TTTTGGGGGAGGCGCTGGTCTGGCAACGCCCTCCCACCGTGAAAAGCTCT
CAACAGGGACGTGTCTATTACTGCAATCAAGTGGCGACGGAACCCCCCTC
CGTGGTGGTTTTCTGCAACAACCCCAAGCTTTTCCCTGACTCCTACAAGC
GGTATCTCGACCGCAAATTCCGCGAGAGCTTGGACTTGACGGGCACGCCA
ATCCGGTGGTATTTCAGGGGGAAAAAACTCCGACAACTTGCCAAGCAAGG
GAGTCCGGTGCCGTACGGGATGCCTGGaagttgaaggagggagggagtga
gtgagtaagtgagggagggagggaggtgggttggtggtgaaggaggacag
tGTGACGAAGGTTTGTGTAATATTTATGGGGAGATGAGATGAAGAAGTGA
AAGCGACAAGTAAAAGTCAGAGCGAGCGCccgattttttttccttcagaA
TATAGCAAGACGCATGGAAGACGCGCTCGTTCGAACTCAGGCTTGTAGTA
GTCGCATTTCTCTCTACATTCCACTAGATAGACTCTCCGCGATCAATTCG
ACCGCAACGACATGTCTTCCACC

Coding sequence (CDS) from alignment at CM002459.1:267222..269894+

>rna2389 ID=rna2389|Name=rna2389|organism=Nannochloropsis gaditana|type=CDS|length=4104bp|location=Sequence derived from alignment at CM002459.1:267222..269894+ (Nannochloropsis gaditana)
ATGCATTTTTGCCAGCCATCCGTTCCTCCCAGTGGTTCAGATAACTGGAG
GCTACGGCCACGCTCCAGGCCTGGCATGGCACATCGACAGCCCTTTCATG
TCAGATTTTTCATATCAGTGGCGGCCTGTGCGGCTTGGACGGGTAGATAC
TCGAGCGTACAAGGTTTTGCGCCACCTGCAAGGCCACTACACACAAAAAT
TGAGGGGATGCACTGTCACGTCCAGCCTCTGTCCACCGCTCAGAGTTTTT
CCGTGCACCGTGAGCAACCACACCTGGACCGGACACCAAAAAGAAAATTG
ACCCTTCTGACAATGGCTCGAGGCAACAGTGGCGGAAGAAGCACGGGGAA
GGGTAAACAGCGGGGCAGGAAAGACACCACAGCGCCGGGTAGCCCGCCAT
CATCAGactcctcctttccgagcAGCACCCGCGGCGAttttgaggaggag
ggcagcgggGACATTGACGACGATGTCGATGCCCtgatggacgacgaggg
ggacgacTACGTCTTCAATCCTGCAGACTTTCCCCTACTGGAAGGGGAAA
TCGATTTCTTCGGCGACTTGGATGGCttggaggaaacggaggaaTCTCGC
GTCCTGCCAGGCGCTCAGCCACTGGATACATCGGGAGGTATCACGCCTAA
GAAGAAGGCAGTAAAACTGCCGGTGCTTGCCGTGATTGGGCGGCCCAACG
TTGGGAAATCTACGATCGTGAATCGGCTCTGCCGGACCATGAGCACGGAG
CCGGACGCCATAGTCTACGACTACGAGGGCGTGACTCGCGACAGGATATA
TCGGAAAGCGGAATGGAACGGCCGAGTCTTCGAGGTGGTGGACACGGGGG
GGCTGATCTTCGACGAAGACCAGGACAACTTGTTCGCCCCCCAAATCCGC
GAACAGGCTCTTCTGGCTCTGGAGGAGTCGGTGGCGGCCATTTTGGTGGT
GGACGGGCAGGTGGGGGTCACCAccttggacgaggaagtcgcCAAATTTC
TCCGGCTCCAGAAGAACAAGCCGATCTTCGTGGCCGTGAACAAGTGCGAG
ACGCCCAACATgggggaggccatggccagcATGTTCTGGAAACTGGGTCT
GGGCGAGCCGTTCCCGGTCAGCGGACTGCACGGGACCGGGGTGGCGGAGA
TGTTGGAGAGGATGCTGCCGCACATCtacgaggtggaggaagcggagcgg
gaggaggcaatcAAGGTGGCGATCGTGGGGAGACCGAACGTGGGAAAGTC
CTCGTTGCTGAACCGGCTCTATGGGAAGGAGCGCGCGATCGTCTCAGACG
TGGCAGGCACCACACGGGATGCGGTAGACgccttggtggaggtgaaTGGG
AAGAGCTACCGCTTCATCGACACGGCGGGGATCCGACGCCGGAAGAAAGT
CGAGTACGGGAACGAGTTCCTGATGGTGAATCGGGCCTTGAAAGCCGTGC
GGCGGGCGGACGTGGTCTTGCTCGTGGtggatgtggtggagggaatCAAC
GACCAGGACAAGATCCTGGCGCAGCGCATCGCGGAAGACGGGCGGGCCTG
CGTCATTGTCGCCAACAAGTGGGACGCAGTGGAAAAGGATGACAGGACAT
TCAACGAGGCGGTCGTGTACGTCAAGGAAGAGCTGTTCGCGGTGAGTTGG
GCGGACGTGCTCTTCACTTCGGCCTTGACCGGCCAGCGATGCCACAAGAT
CTTCGACGCCATCGATAAAGCCTCGGCTGCCCACCGTCAACGGGTGAAGA
CGAGCATTTTGAACGAGGTTTTGGGGGAGGCGCTGGTCTGGCAACGCCCT
CCCACCGTGAAAAGCTCTCAACAGGGACGTGTCTATTACTGCAATCAAGT
GGCGACGGAACCCCCCTCCGTGGTGGTTTTCTGCAACAACCCCAAGCTTT
TCCCTGACTCCTACAAGCGGTATCTCGACCGCAAATTCCGCGAGAGCTTG
GACTTGACGGGCACGCCAATCCGGTGGTATTTCAGGGGGAAAAAACTCCG
ACAACTTGCCAAGCAAGGGAGTCCGGTGCCGTACGGGATGCCTGGaagtt
gaATGCATTTTTGCCAGCCATCCGTTCCTCCCAGTGGTTCAGATAACTGG
AGGCTACGGCCACGCTCCAGGCCTGGCATGGCACATCGACAGCCCTTTCA
TGTCAGATTTTTCATATCAGTGGCGGCCTGTGCGGCTTGGACGGGTAGAT
ACTCGAGCGTACAAGGTTTTGCGCCACCTGCAAGGCCACTACACACAAAA
ATTGAGGGGATGCACTGTCACGTCCAGCCTCTGTCCACCGCTCAGAGTTT
TTCCGTGCACCGTGAGCAACCACACCTGGACCGGACACCAAAAAGAAAAT
TGACCCTTCTGACAATGGCTCGAGGCAACAGTGGCGGAAGAAGCACGGGG
AAGGGTAAACAGCGGGGCAGGAAAGACACCACAGCGCCGGGTAGCCCGCC
ATCATCAGactcctcctttccgagcAGCACCCGCGGCGAttttgaggagg
agggcagcgggGACATTGACGACGATGTCGATGCCCtgatggacgacgag
ggggacgacTACGTCTTCAATCCTGCAGACTTTCCCCTACTGGAAGGGGA
AATCGATTTCTTCGGCGACTTGGATGGCttggaggaaacggaggaaTCTC
GCGTCCTGCCAGGCGCTCAGCCACTGGATACATCGGGAGGTATCACGCCT
AAGAAGAAGGCAGTAAAACTGCCGGTGCTTGCCGTGATTGGGCGGCCCAA
CGTTGGGAAATCTACGATCGTGAATCGGCTCTGCCGGACCATGAGCACGG
AGCCGGACGCCATAGTCTACGACTACGAGGGCGTGACTCGCGACAGGATA
TATCGGAAAGCGGAATGGAACGGCCGAGTCTTCGAGGTGGTGGACACGGG
GGGGCTGATCTTCGACGAAGACCAGGACAACTTGTTCGCCCCCCAAATCC
GCGAACAGGCTCTTCTGGCTCTGGAGGAGTCGGTGGCGGCCATTTTGGTG
GTGGACGGGCAGGTGGGGGTCACCAccttggacgaggaagtcgcCAAATT
TCTCCGGCTCCAGAAGAACAAGCCGATCTTCGTGGCCGTGAACAAGTGCG
AGACGCCCAACATgggggaggccatggccagcATGTTCTGGAAACTGGGT
CTGGGCGAGCCGTTCCCGGTCAGCGGACTGCACGGGACCGGGGTGGCGGA
GATGTTGGAGAGGATGCTGCCGCACATCtacgaggtggaggaagcggagc
gggaggaggcaatcAAGGTGGCGATCGTGGGGAGACCGAACGTGGGAAAG
TCCTCGTTGCTGAACCGGCTCTATGGGAAGGAGCGCGCGATCGTCTCAGA
CGTGGCAGGCACCACACGGGATGCGGTAGACgccttggtggaggtgaaTG
GGAAGAGCTACCGCTTCATCGACACGGCGGGGATCCGACGCCGGAAGAAA
GTCGAGTACGGGAACGAGTTCCTGATGGTGAATCGGGCCTTGAAAGCCGT
GCGGCGGGCGGACGTGGTCTTGCTCGTGGtggatgtggtggagggaatCA
ACGACCAGGACAAGATCCTGGCGCAGCGCATCGCGGAAGACGGGCGGGCC
TGCGTCATTGTCGCCAACAAGTGGGACGCAGTGGAAAAGGATGACAGGAC
ATTCAACGAGGCGGTCGTGTACGTCAAGGAAGAGCTGTTCGCGGTGAGTT
GGGCGGACGTGCTCTTCACTTCGGCCTTGACCGGCCAGCGATGCCACAAG
ATCTTCGACGCCATCGATAAAGCCTCGGCTGCCCACCGTCAACGGGTGAA
GACGAGCATTTTGAACGAGGTTTTGGGGGAGGCGCTGGTCTGGCAACGCC
CTCCCACCGTGAAAAGCTCTCAACAGGGACGTGTCTATTACTGCAATCAA
GTGGCGACGGAACCCCCCTCCGTGGTGGTTTTCTGCAACAACCCCAAGCT
TTTCCCTGACTCCTACAAGCGGTATCTCGACCGCAAATTCCGCGAGAGCT
TGGACTTGACGGGCACGCCAATCCGGTGGTATTTCAGGGGGAAAAAACTC
CGACAACTTGCCAAGCAAGGGAGTCCGGTGCCGTACGGGATGCCTGGaag
ttga

Synonyms

Publications