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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100004g10.9214.mrna |
| Orig protein id | gnl|cribi|Naga_100004g10.9214 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:246151..248508 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2380 ID=rna2380|Name=rna2380|organism=Nannochloropsis gaditana|type=mRNA|length=1164bp
GTTATATCTTAAGGACGCGATGTGTCCGCCCTAGCAGGTACATATTTGCC
TTGAAAGACCGGCCTGCGCGTACGACAGAGCATGTTGAGGCACGCGTTTG
GATTTACAATGTCTTCTTATACGTAGAGGACTGGCGGGCACCCCGACGTC
GCAACACGTTTTTCTGTGACCTTCTCCTCACCAACCGGGCAGGCAATTGA
TTTACAGGCTTGATTCGCTCATGCGACGCGTTTTAAATTATCGACATCAT
CTATTTTATTCCTTTCTCTTACTTTTTTTCTCTCCCGTAAGCCCGAAAGG
TATGGTGCGCCTTCCCACGATCGTAGCGGTAGCCTGTCTCCTCCAAGGTA
TTGCCGCCTTTGTCACCCCGCGACCCGTACTTTTGAGCCCAGCGAGGCCC
TCAATGCGCGTCAATCCCCTCATGATGTCCAAGGATCTCGTCGGATTTGG
GGACGACTTGGACGGGTCCACGTGCCGCATTGGCATCGTGAAGACACGCT
GGAATCCCGAGATTGTCGATTCCCTCTATGAAGGCGTCCGCGCCGCTTTG
AACGAGACTGGCGTCAAGGACGAAAATGTCTACGACACAACCGTGCCAGG
GTCTTTTGAATTGCCCTTGGCGGCCCGGTTTTTGGCACTGTCGAGGCAGT
GCGACGTGGTGATCACGATCGGATGTTTGATCAAGGGGGAGACAATGCAT
TTCGAGTACATCGCCGAGGCTGTCACCAAAGGGTTGATGGATATTCAACT
GCAAACGACCATTCCTGTCATTTTTGGCGTGCTTACGGTGCTTACAGAGG
AGCAGGCCGTTGCACGTTCGAAGGGGGAAAACAATCACGGCATTTCGTGG
GGGAAGACCGCAGTGGAAATGGCGCTGTTGCGCAATGCAGCTTTAGCCAA
GGGACCGAATAGGGCGACACTACCTTTGACAGAGAAGCTGGAGGACACGC
CGGAGGAGAAGAAGCAGTCCAAACAATTTGGCTTTTGAACATGATTTCAT
TTAGCCTTTGCAGTCATACCTGCTCCGCATGGTGGGATTCTCATAGCGTA
GAGTCGTTGCAAACGGCGGAAAGAAAGTTCTAGCTCATCAAATGTATGTG
TACATGCACACGGATTGCGAGAAACATAAAAGAAAGCCCTGCTTAGTTTG
AAAGATAAAGCTGT back to topprotein sequence of rna2380 >rna2380-protein ID=rna2380-protein|Name=rna2380|organism=Nannochloropsis gaditana|type=polypeptide|length=701bp
MHRPSGPPVASFPAHPSSPSPAGTSEREITGDKNDDHSRRRPYTDRRPRR
TFQPDGSLPEMSDPHLFSAKRFRPLDHGYDASHRPMSRVEARCAQCAHRL
VYQGEDSKGHGLAERGRGQLRNGMDGKEGDGRDGDSYRPGEQHRSMLQDS
SEDFVEHVRNGILSLSPDREEEEDSVEEKEEEEWDGTEEEGRCPRRGFED
KERKKGTREPVWRGKGEAGGCEREAKRIVDSEVEACGPCPPPRRYPVSEE
SAGRESASGSVFSSYYHGKGENHALRETSPRGPAGAKRMMRIYAPPPSSP
SCPPLHRRPRPRCLSSPSPSPPFPSLLSLTRSQVPTRPKPRGRGRWWLLR
WRPLPSWFGRHSRPWVLRQDSPWKRAWDMLTVLVALLVLCYDAASLVHLH
PGPFPPGPIPSSPPSAPPSSASFQASPSPAPSPLDATSLYHLLLLETFWF
LADLALAFRTEVEAGVDSEAETETLVLLTDPHAIAVQYLTRDFWLDLCFS
FPWLAISALLLAPKQKKRNLLRRAIGHVGRGVGGLLGRVKRGVGEKIPRM
LRPGNVKRFLEWTKVLDVKKVDGVKHVVKYRSGYRGLRLFIRALRWLCRF
PVVSFLWRVYRKLEAHLVVALPDGEGGEEERKTPGKVWRARHTRSRGTHA
STRQEDYEVKFREKANRKFHTGEVDREAIGGHEHVKEKWPETTWFEKRLD
E back to topmRNA from alignment at CM002459.1:246151..248508+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2380 ID=rna2380|Name=rna2380|organism=Nannochloropsis gaditana|type=mRNA|length=2358bp|location=Sequence derived from alignment at CM002459.1:246151..248508+ (Nannochloropsis gaditana)
tggcgTGTGACCATAAGTTGGCCGACAGGGTCTCCCCATGCATCGTCCAT
CAGGCCCGCCGGTGGCATCTTTTCCCGCACATCCGTCTAGCCCAAGCCCT
GCCGGCACGAGCGAAAGGGAGATCACTGGCGACAAGAACGATGATCACAG
CCGTCGTCGCCCGTACACTGATAGGAGGCCGCGCAGAACTTTTCAGCCTG
ATGGCAGCCTCCCGGAGATGTCCGACCCACATCTCTTCTCGGCAAAGCGA
TTTCGACCCCTTGACCACGGCTACGACGCTTCGCACAGACCCATGTCTCG
GGTGGAAGCAAGATGCGCGCAGTGTGCACATCGCCTCGTCTATCAAGGCG
AAGACTCCAAGGGACACGGCTtggcggaaagggggagggggcagcttAGG
AATGGAAtggacgggaaagagggagatgggcgggacggagacTCTTATAG
GCCTGGAGAGCAGCATAGAAGTATGCTTCAAGATTCAAGCGAAGATTTTG
TAGAGCATGTGCGCAATGGTATCTTGTCGTTGTCGCCggacagagaggaa
gaggaggattcggtcgaggagaaggaagaagaggaatgggacgggacgga
ggaggagggacgatgCCCGAGGCGAGGTTTtgaagacaaggagaggaaaa
aaggaaccAGAGAGCCGgtgtggaggggaaaaggcgaaGCGGGAGGATGT
GAGAGGGAAGCGAAGAGAATAGTGGACAGTGAGGTGGAGGCAtgcggccc
ctgcccccccccccgaaggTATCCGGTTAGCGAGGAGAGTGCTGGGAGGG
AATCAGCCAGTGGCTCCGTCTTTTCCAGCTATTATCATGGCAAGGGTGAG
AACCATGCCTTGCGCGAAACCTCCCCGCGAGGACCCGCGGGGGCGAAACG
CATGATGAGGATCtacgcccctccgccctcctccccttcttgtcctcccc
tccaccgtcggccacggccccggtgtctctcttctccttctccctccccc
ccattcccATCTCTTCTGTCCTTGACACGGTCCCAAGTCCCCACCCGCCC
TAAACCCCGAGGCCGGGGCCGCTGGTGGCTGCTTCGATGGCGCCCCCTAC
CCTCCTGGTTTGGGCGACATTCCCGGCCGTGGGTCCTGCGGCAGGATTCC
CCCTGGAAACGCGCCTGGGACATGCTCACAGTGCTGGTTGCACTCCTTGT
TCTGTGCTACGACGCGGCTTCCCTcgttcacctccaccccgggcccttcc
ctcccggcccgatcccgtcctccccgccctccgccccgccctcctccgcc
tccttccaagcctccccctcccccgccccttcccccctcgacgccacctc
cctctatcaccttcttcttctggaAACCTTCTGGTTCCTCGCCGACctgg
ccctcgccttccGGACCGAGGTGGAAGCCGGGGTCGACTCTGAGGCAGAG
ACGGAGACCCTGGTGCTCTTGACGGACCCCCACGCCATCGCCGTGCAGTA
TCTGACGCGTGATTTTTGGCTGGACTtgtgcttctccttcccttggctGG
CTATCTCCGCTTTGTTGCTCGCGCCCAAACAGAAGAAGCGGAACCTGCTC
CGGCGGGCGATAGGTCACGTTGGCCGGGGGGTGGGCGGATTGTTGGGCAG
GGTGAAaaggggagtgggggaaaagatcCCGCGCATGCTGCGTCCCGGGA
ATGTGAAACGGTTTTTGGAGTGGACGAAGGTGCTGGACGTGAAGAAAGTG
GACGGGGTGAAGCACGTGGTGAAATACCGCAGTGGCTACAGGGGTTTGCG
TCTTTTTATTCGGGCGTTGCGGTGGCTCTGTCGGTTTCCCGTCGTCTCTT
TCCTGTGGAGGGTGTATAGGAAGCTGGAGGCACATTTGGTGGTGGCCCTC
cccgatggggaggggggggaggaggaaaggaaaacgcCGGGAAAGGTGTG
GCGGGCCCGGCACACGAGAAGCAGAGGCACGCATGCGTCGACTCGCCAAG
AAGATTATGAAGTTAAATTTAGGGAAAAGGCGAACAGGAAGTTTCACACC
GGAGAAGTGGATAGAGAGGCTATCGGTGGTCATGAGCAtgtgaaggagaa
gtggCCAGAAACAACGTGGTTCGAGAAACGTTTGGATGAATGAAGGTGGG
AAGTCACTGACGGTATGACCAAAGACGAGCTTTTACCGATCAAAGCCGTC
GTCCCATGGGAAACTCTACGGCAATATCATCCCTGTCGCTCCATCACTGA
ATCGGCCTTGACGGTGTGAGAACTACATGCGAGTACAGGACGCGAAGTCC
GCAGAAAAAGGAACAAAGCTGCGACACAAAGTAAGAATGAAAAATGTTGG
CCTACAGA back to topCoding sequence (CDS) from alignment at CM002459.1:246151..248508+ >rna2380 ID=rna2380|Name=rna2380|organism=Nannochloropsis gaditana|type=CDS|length=2106bp|location=Sequence derived from alignment at CM002459.1:246151..248508+ (Nannochloropsis gaditana)
ATGCATCGTCCATCAGGCCCGCCGGTGGCATCTTTTCCCGCACATCCGTC
TAGCCCAAGCCCTGCCGGCACGAGCGAAAGGGAGATCACTGGCGACAAGA
ACGATGATCACAGCCGTCGTCGCCCGTACACTGATAGGAGGCCGCGCAGA
ACTTTTCAGCCTGATGGCAGCCTCCCGGAGATGTCCGACCCACATCTCTT
CTCGGCAAAGCGATTTCGACCCCTTGACCACGGCTACGACGCTTCGCACA
GACCCATGTCTCGGGTGGAAGCAAGATGCGCGCAGTGTGCACATCGCCTC
GTCTATCAAGGCGAAGACTCCAAGGGACACGGCTtggcggaaagggggag
ggggcagcttAGGAATGGAAtggacgggaaagagggagatgggcgggacg
gagacTCTTATAGGCCTGGAGAGCAGCATAGAAGTATGCTTCAAGATTCA
AGCGAAGATTTTGTAGAGCATGTGCGCAATGGTATCTTGTCGTTGTCGCC
ggacagagaggaagaggaggattcggtcgaggagaaggaagaagaggaat
gggacgggacggaggaggagggacgatgCCCGAGGCGAGGTTTtgaagac
aaggagaggaaaaaaggaaccAGAGAGCCGgtgtggaggggaaaaggcga
aGCGGGAGGATGTGAGAGGGAAGCGAAGAGAATAGTGGACAGTGAGGTGG
AGGCAtgcggcccctgcccccccccccgaaggTATCCGGTTAGCGAGGAG
AGTGCTGGGAGGGAATCAGCCAGTGGCTCCGTCTTTTCCAGCTATTATCA
TGGCAAGGGTGAGAACCATGCCTTGCGCGAAACCTCCCCGCGAGGACCCG
CGGGGGCGAAACGCATGATGAGGATCtacgcccctccgccctcctcccct
tcttgtcctcccctccaccgtcggccacggccccggtgtctctcttctcc
ttctccctcccccccattcccATCTCTTCTGTCCTTGACACGGTCCCAAG
TCCCCACCCGCCCTAAACCCCGAGGCCGGGGCCGCTGGTGGCTGCTTCGA
TGGCGCCCCCTACCCTCCTGGTTTGGGCGACATTCCCGGCCGTGGGTCCT
GCGGCAGGATTCCCCCTGGAAACGCGCCTGGGACATGCTCACAGTGCTGG
TTGCACTCCTTGTTCTGTGCTACGACGCGGCTTCCCTcgttcacctccac
cccgggcccttccctcccggcccgatcccgtcctccccgccctccgcccc
gccctcctccgcctccttccaagcctccccctcccccgccccttcccccc
tcgacgccacctccctctatcaccttcttcttctggaAACCTTCTGGTTC
CTCGCCGACctggccctcgccttccGGACCGAGGTGGAAGCCGGGGTCGA
CTCTGAGGCAGAGACGGAGACCCTGGTGCTCTTGACGGACCCCCACGCCA
TCGCCGTGCAGTATCTGACGCGTGATTTTTGGCTGGACTtgtgcttctcc
ttcccttggctGGCTATCTCCGCTTTGTTGCTCGCGCCCAAACAGAAGAA
GCGGAACCTGCTCCGGCGGGCGATAGGTCACGTTGGCCGGGGGGTGGGCG
GATTGTTGGGCAGGGTGAAaaggggagtgggggaaaagatcCCGCGCATG
CTGCGTCCCGGGAATGTGAAACGGTTTTTGGAGTGGACGAAGGTGCTGGA
CGTGAAGAAAGTGGACGGGGTGAAGCACGTGGTGAAATACCGCAGTGGCT
ACAGGGGTTTGCGTCTTTTTATTCGGGCGTTGCGGTGGCTCTGTCGGTTT
CCCGTCGTCTCTTTCCTGTGGAGGGTGTATAGGAAGCTGGAGGCACATTT
GGTGGTGGCCCTCcccgatggggaggggggggaggaggaaaggaaaacgc
CGGGAAAGGTGTGGCGGGCCCGGCACACGAGAAGCAGAGGCACGCATGCG
TCGACTCGCCAAGAAGATTATGAAGTTAAATTTAGGGAAAAGGCGAACAG
GAAGTTTCACACCGGAGAAGTGGATAGAGAGGCTATCGGTGGTCATGAGC
AtgtgaaggagaagtggCCAGAAACAACGTGGTTCGAGAAACGTTTGGAT
GAATGA back to top
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