rna2371, rna2371 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2371
Unique Name	rna2371
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	504
Alignment location	CM002459.1:219584..221224 -

Link to JBrowse

Properties


Property Name	Value
Product	usp37 protein
Orig transcript id	gnl\|cribi\|Naga_100004g1.9090.mrna
Orig protein id	gnl\|cribi\|Naga_100004g1.9090
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:219584..221224 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g1	gene2266	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2371	rna2371-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28159.1	cds2363	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:219584..221224-
coding sequence from alignment at CM002459.1:219584..221224-

mRNA sequence

>rna2371 ID=rna2371|Name=rna2371|organism=Nannochloropsis gaditana|type=mRNA|length=504bp
TGGCCCCTCAACCTCCTGTGAGGGTCCTAACCCTCACCCTCCCCTCTCTC
CACCACCCTTCCTCCCTTGTTCCTCCTTGTGCCTCCCTTCTTGGCTGTCT
GCCTCCCCCTTTGTGCTCGGTCCAGGCAATTCGCGGGCGCCAGTGCCGGG
GCGGAGTACGGGGATGAAGCAATGGGGATGGACACGGGCATGTTGGGCGC
GGTGGGGGGAAGGCTTCGAATCCCGGGAGCCAAGGAGCAACGCCAAAGCG
TAGGGAAAAAAAAGAAGGCGGAGCTGGCCAAGATGTCAGGGGCGGGGGCA
GGGGCCGGGGGAGGGCGGGTGTTGTCGATGGGGGGTTCCTCGGGCGCGAC
GAATGGAATGGCCTCCTCCTTGGTATTCACGCCCACGCAAGGTTTGGAGC
TGATGAACCCGATCGCGGCGGAGGAGAAGAGACGGAGGGTAGACGAAGCG
AACAAGTCCTGGTTCGATTCCTCCAGCGGATTCATGAGCGCCAAGCCCCG
TTGA

protein sequence of rna2371

>rna2371-protein ID=rna2371-protein|Name=rna2371|organism=Nannochloropsis gaditana|type=polypeptide|length=420bp
MAHDNEPALPNAALAPEDSHTTDSGTYGNGSCGKIDIKRNGVHGREDKTM
CPQDHTGWTTLGLVNLGNTCFLNTVLQALASLPPFKEALEQALTFRPGSD
APVSRLVLRYLHSLQPTCIKNDAAATFGAPFPPHSEAQSPSDLLYLLRGC
CASFFRRNEQQDAEEFLQVPSSFSSSSPSSSSHSSSSSSSSSSSSSSSSS
SSSFAAAAASSSSSFAPSFSSSSIAASSTFTFRNPFAGWLASVVKCAVCG
HCRPIQNSSFLDVPLSLHPPATSPSSPSSPSPPFLSPVVSSLRPLNGLLT
GRSLPAPPFRLPSASHPPPSSSSSSSSSSSSSHILELLDSFAQEETVRGL
PCHSCRCRHVLRDLTAKIQRLETGIRHVEEAGGEQVEGTLTFLRKEMKEV
RAVKENLLRLDGSRPTAGAH

mRNA from alignment at CM002459.1:219584..221224-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2371 ID=rna2371|Name=rna2371|organism=Nannochloropsis gaditana|type=mRNA|length=1641bp|location=Sequence derived from alignment at CM002459.1:219584..221224- (Nannochloropsis gaditana)
ATGGCACATGACAACGAACCCGCCCTCCCTAATGCAGCCCTTGCTCCTGA
GGACTCTCATACCACGGACAGTGGCACCTACGGCAATGGCAGCTGTGGTA
AAATTGATATAAAAAGAAACGGCGTTCATGGACGGGAAGATAAAACAATG
TGCCCGCAAGATCACACGGGATGGACGACCTTGGGATTGGTCAACCTCGG
GAACACTTGCTTCCTCAACACCGTTTTACAAGCCTTAGCTTCCCTCCCTC
CCTTCAAAGAGGCACTGGAGCAGGCCCTTACTTTCCGTCCAGGCAGTGAC
GCGCCTGTCAGCCGCCTAGTGCTTCGCTACCTCCACTCCCTTCAACCCAC
CTGCATCAAGAATGACGCGGCTGCTACCTTTGGCGCCCCCTTTCCGCCTC
ACTCTGAGGCCCAGAGTCCCTCCGACCTCCTTTACCTCCTGCGTGGATGC
TGCGCCTCTTTTTTCCGACGGAACGAACAGCAGGATGCGGAGGAATTCCT
ACAGGTGCTGCTCAATGTCCTGGGCGACGAATTCACGGACGCGGCGCCCT
CCATAAGCCGTGGCCCCCTCTCCTCCACCCTCTCCTCCTCCCTCTCCCCC
TCCTCCCATGGCCTCACGGGTCTTCGCCACGTCTCTAGCGTTAGGAGACG
GGTCCGAGGCCTTCAATCTCTCAGGTCCCCTCCTCCTTCTCCTCCTCCTC
ACCCTCCTCCTCCTCACACTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCT
CCTCATCCTCCTCCTCCTCCTCCTCCTCTTTCGCCGCCGCCGCCGCCTCC
TCCTCCTCCTCCTTCGCCCCCTCCTTCTCTTCCTCCTCCATCGCCGCCTC
CTCGACCTTCACCTTCCGTAACCCTTTTGCCGGATGGCTCGCGAGCGTCG
TGAAATGCGCTGTGTGCGGCCACTGCCGCCCGATTCAGAACTCCTCCTTC
CTCGATGTTCCCCTCTCCCTCCACCCGCCCGCTACCTCCCCCTCGTCGCC
CTCCTCCCCTTCCCCTCCCTTCCTCTCCCCCGTCGTTTCGTCCCTTCGAC
CTCTGAACGGCCTCCTCACCGGCCGATCCCTCCCTGCACCTCCCTTCCGC
CTTCCCTCCGCATCACACCCGCCTCCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCCACATCCTCGAACTCCTTGACTCCTTCGCCCAGG
AAGAGACCGTCCGAGGTCTTCCCTGCCACAGCTGCCGCTGCCGCCACGTC
CTCCGGGACCTGACCGCCAAGATTCAGCGCCTGGAGACAGGCATTCGGCA
CGTGGAAGAAGCGGGGGGCGAGCAGGTTGAAGGCACCTTAACTTTTCTCC
GAAAAGAAATGAAGGAGGTGCGGGCGGTGAAGGAGAATCTGCTTCGCCTC
GACGGTGACGACCCGCTTCCCGCCCTCCCGCCCTCCCTCCCGCCCTCGGC
TCCCGACGGCATGCATCCTCCCTTTTTCAAACGCCTCCTTTTCTCCCGCC
TTCCCCCCCTCCTTTGTCTCCACTTGGGCCGCCGCGCCTTCTCCCCTTCC
TCACGGCGCATGCTCAAGGTCCGGAGGCGCGTGGTCTTTCCCCTCCTCTT
GGACGTGGGCAGGTTCGCGGCCTACGGCGGGGGCGCATTGA

Coding sequence (CDS) from alignment at CM002459.1:219584..221224-

>rna2371 ID=rna2371|Name=rna2371|organism=Nannochloropsis gaditana|type=CDS|length=3789bp|location=Sequence derived from alignment at CM002459.1:219584..221224- (Nannochloropsis gaditana)
GTTCGCGGCCTACGGCGGGGGCGCATTGAGTCCCCTCCTCCTTCTCCTCC
TCCTCACCCTCCTCCTCCTCACACTCCTCCTCCTCCTCCTCTTCCTCCTC
CTCCTCCTCATCCTCCTCCTCCTCCTCCTCCTCTTTCGCCGCCGCCGCCG
CCTCCTCCTCCTCCTCCTTCGCCCCCTCCTTCTCTTCCTCCTCCATCGCC
GCCTCCTCGACCTTCACCTTCCGTAACCCTTTTGCCGGATGGCTCGCGAG
CGTCGTGAAATGCGCTGTGTGCGGCCACTGCCGCCCGATTCAGAACTCCT
CCTTCCTCGATGTTCCCCTCTCCCTCCACCCGCCCGCTACCTCCCCCTCG
TCGCCCTCCTCCCCTTCCCCTCCCTTCCTCTCCCCCGTCGTTTCGTCCCT
TCGACCTCTGAACGGCCTCCTCACCGGCCGATCCCTCCCTGCACCTCCCT
TCCGCCTTCCCTCCGCATCACACCCGCCTCCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCCACATCCTCGAACTCCTTGACTCCTTCGC
CCAGGAAGAGACCGTCCGAGGTCTTCCCTGCCACAGCTGCCGCTGCCGCC
ACGTCCTCCGGGACCTGACCGCCAAGATTCAGCGCCTGGAGACAGGCATT
CGGCACGTGGAAGAAGCGGGGGGCGAGCAGGTTGAAGGCACCTTAACTTT
TCTCCGAAAAGAAATGAAGGAGGTGCGGGCGGTGAAGGAGAATCTGCTTC
GCCTCGACGATGGCACATGACAACGAACCCGCCCTCCCTAATGCAGCCCT
TGCTCCTGAGGACTCTCATACCACGGACAGTGGCACCTACGGCAATGGCA
GCTGTGGTAAAATTGATATAAAAAGAAACGGCGTTCATGGACGGGAAGAT
AAAACAATGTGCCCGCAAGATCACACGGGATGGACGACCTTGGGATTGGT
CAACCTCGGGAACACTTGCTTCCTCAACACCGTTTTACAAGCCTTAGCTT
CCCTCCCTCCCTTCAAAGAGGCACTGGAGCAGGCCCTTACTTTCCGTCCA
GGCAGTGACGCGCCTGTCAGCCGCCTAGTGCTTCGCTACCTCCACTCCCT
TCAACCCACCTGCATCAAGAATGACGCGGCTGCTACCTTTGGCGCCCCCT
TTCCGCCTCACTCTGAGGCCCAGAGTCCCTCCGACCTCCTTTACCTCCTG
CGTGGATGCTGCGCCTCTTTTTTCCGACGGAACGAACAGCAGGATGCGGA
GGAATTCCTACAGGTTCGCGGCCTACGGCGGGGGCGCATTGAGTCCCCTC
CTCCTTCTCCTCCTCCTCACCCTCCTCCTCCTCACACTCCTCCTCCTCCT
CCTCTTCCTCCTCCTCCTCCTCATCCTCCTCCTCCTCCTCCTCCTCTTTC
GCCGCCGCCGCCGCCTCCTCCTCCTCCTCCTTCGCCCCCTCCTTCTCTTC
CTCCTCCATCGCCGCCTCCTCGACCTTCACCTTCCGTAACCCTTTTGCCG
GATGGCTCGCGAGCGTCGTGAAATGCGCTGTGTGCGGCCACTGCCGCCCG
ATTCAGAACTCCTCCTTCCTCGATGTTCCCCTCTCCCTCCACCCGCCCGC
TACCTCCCCCTCGTCGCCCTCCTCCCCTTCCCCTCCCTTCCTCTCCCCCG
TCGTTTCGTCCCTTCGACCTCTGAACGGCCTCCTCACCGGCCGATCCCTC
CCTGCACCTCCCTTCCGCCTTCCCTCCGCATCACACCCGCCTCCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCACATCCTCGAACTCC
TTGACTCCTTCGCCCAGGAAGAGACCGTCCGAGGTCTTCCCTGCCACAGC
TGCCGCTGCCGCCACGTCCTCCGGGACCTGACCGCCAAGATTCAGCGCCT
GGAGACAGGCATTCGGCACGTGGAAGAAGCGGGGGGCGAGCAGGTTGAAG
GCACCTTAACTTTTCTCCGAAAAGAAATGAAGGAGGTGCGGGCGGTGAAG
GAGAATCTGCTTCGCCTCGACGATGGCACATGACAACGAACCCGCCCTCC
CTAATGCAGCCCTTGCTCCTGAGGACTCTCATACCACGGACAGTGGCACC
TACGGCAATGGCAGCTGTGGTAAAATTGATATAAAAAGAAACGGCGTTCA
TGGACGGGAAGATAAAACAATGTGCCCGCAAGATCACACGGGATGGACGA
CCTTGGGATTGGTCAACCTCGGGAACACTTGCTTCCTCAACACCGTTTTA
CAAGCCTTAGCTTCCCTCCCTCCCTTCAAAGAGGCACTGGAGCAGGCCCT
TACTTTCCGTCCAGGCAGTGACGCGCCTGTCAGCCGCCTAGTGCTTCGCT
ACCTCCACTCCCTTCAACCCACCTGCATCAAGAATGACGCGGCTGCTACC
TTTGGCGCCCCCTTTCCGCCTCACTCTGAGGCCCAGAGTCCCTCCGACCT
CCTTTACCTCCTGCGTGGATGCTGCGCCTCTTTTTTCCGACGGAACGAAC
AGCAGGATGCGGAGGAATTCCTACAGGTTCGCGGCCTACGGCGGGGGCGC
ATTGAGTCCCCTCCTCCTTCTCCTCCTCCTCACCCTCCTCCTCCTCACAC
TCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCATCCTCCTCCTCCTC
CTCCTCCTCTTTCGCCGCCGCCGCCGCCTCCTCCTCCTCCTCCTTCGCCC
CCTCCTTCTCTTCCTCCTCCATCGCCGCCTCCTCGACCTTCACCTTCCGT
AACCCTTTTGCCGGATGGCTCGCGAGCGTCGTGAAATGCGCTGTGTGCGG
CCACTGCCGCCCGATTCAGAACTCCTCCTTCCTCGATGTTCCCCTCTCCC
TCCACCCGCCCGCTACCTCCCCCTCGTCGCCCTCCTCCCCTTCCCCTCCC
TTCCTCTCCCCCGTCGTTTCGTCCCTTCGACCTCTGAACGGCCTCCTCAC
CGGCCGATCCCTCCCTGCACCTCCCTTCCGCCTTCCCTCCGCATCACACC
CGCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCAC
ATCCTCGAACTCCTTGACTCCTTCGCCCAGGAAGAGACCGTCCGAGGTCT
TCCCTGCCACAGCTGCCGCTGCCGCCACGTCCTCCGGGACCTGACCGCCA
AGATTCAGCGCCTGGAGACAGGCATTCGGCACGTGGAAGAAGCGGGGGGC
GAGCAGGTTGAAGGCACCTTAACTTTTCTCCGAAAAGAAATGAAGGAGGT
GCGGGCGGTGAAGGAGAATCTGCTTCGCCTCGACGATGGCACATGACAAC
GAACCCGCCCTCCCTAATGCAGCCCTTGCTCCTGAGGACTCTCATACCAC
GGACAGTGGCACCTACGGCAATGGCAGCTGTGGTAAAATTGATATAAAAA
GAAACGGCGTTCATGGACGGGAAGATAAAACAATGTGCCCGCAAGATCAC
ACGGGATGGACGACCTTGGGATTGGTCAACCTCGGGAACACTTGCTTCCT
CAACACCGTTTTACAAGCCTTAGCTTCCCTCCCTCCCTTCAAAGAGGCAC
TGGAGCAGGCCCTTACTTTCCGTCCAGGCAGTGACGCGCCTGTCAGCCGC
CTAGTGCTTCGCTACCTCCACTCCCTTCAACCCACCTGCATCAAGAATGA
CGCGGCTGCTACCTTTGGCGCCCCCTTTCCGCCTCACTCTGAGGCCCAGA
GTCCCTCCGACCTCCTTTACCTCCTGCGTGGATGCTGCGCCTCTTTTTTC
CGACGGAACGAACAGCAGGATGCGGAGGAATTCCTACAG

Synonyms

Publications