rna2370, rna2370 (mRNA) Nannochloropsis gaditana

Overview
Namerna2370
Unique Namerna2370
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length439
Alignment locationCM002459.1:218779..219282 +

Link to JBrowse

Properties
Property NameValue
Productu4 u6 small nuclear ribonucleoprotein prp31
Orig transcript idgnl|cribi|Naga_102057g2.7936.mrna
Orig protein idgnl|cribi|Naga_102057g2.7936
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:218779..219282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102057g2gene2265Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2370rna2370-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28311.1cds2362Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2370 ID=rna2370|Name=rna2370|organism=Nannochloropsis gaditana|type=mRNA|length=439bp
ATGGGCCAGGAAAAAAAGAGCCTGCAGGGTCTAGCGGCGGCCCAAGGGAT
TCCCCATGCGGGCGTATTGATCGGCTGCGAGGTGGTGCTCGGAGCCCCGC
CTGCCTTGCGCCAAAAAGCGCTGCGGCTGGTGGCGAGCAAGGTGGCTTTG
ACCGCCCGGATGGACGCGTACCAGCCGGAGGGGGAGGGTGGGAGGGAGGG
CGGGAGGGAGAAGGGGGCGGGAGGCAGGGCCTTGCGGGCGGAGTGTGAGG
ACAAGATTTTGAAATGGCAGGAGCCATCGAAAGGGAAGGAGAAGAAAGCG
CTTCCGGTCCCAGAGATGTCGGCGCGGAAGAAACGGGCGGGCAAGCGCGT
GACCAAGGCGAAGGAGAAGTTTGCCATGACGGAGATGCGGAAGGAGTACG
GACGACGGTGAGCAGGGAGGGAGGGAGGGAGGGAGGGAG
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protein sequence of rna2370

>rna2370-protein ID=rna2370-protein|Name=rna2370|organism=Nannochloropsis gaditana|type=polypeptide|length=110bp
MGMDTGMLGAVGGRLRIPGAKEQRQSVGKKKKAELAKMSGAGAGAGGGRV
LSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDS
SSGFMSAKPR
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mRNA from alignment at CM002459.1:218779..219282+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2370 ID=rna2370|Name=rna2370|organism=Nannochloropsis gaditana|type=mRNA|length=504bp|location=Sequence derived from alignment at CM002459.1:218779..219282+ (Nannochloropsis gaditana)
TggcccctcaacctcctgtGAGGGTCCTAaccctcaccctcccctctctc
caccacccttcctcccttgttccTCCTTGTGCCTCCCTTCTTGGCTGTCT
GCCTCCCCCTTTGTGCTCGGTCCAGGCAATTCGCGGGCGCCAGTGCCGGG
GCGGAGTACGGGGATGAAGCAATGGGGATGGACACGGGCATGTTGGGcgc
ggtggggggaaggctTCGAATCCCGGGAGCCAAGGAGCAACGCCAAAGCg
tagggaaaaaaaagaaggcgGAGCTGGCCAAGATGtcaggggcgggggca
ggggccgggggagggcgggtgtTGTCGATGGGGGGTTCCTCGGGCGCGAC
GAATGgaatggcctcctccttggtatTCACGCCCACGCAAGGTTTGGAGC
TGATGAACCCGatcgcggcggaggagaagagacgGAGGGTAGACGAAGCG
AACAAGTCCTGGTTCGATTCCTCCAGCGGATTCATGAGCGCCAAGCCCCG
TTGA
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Coding sequence (CDS) from alignment at CM002459.1:218779..219282+

>rna2370 ID=rna2370|Name=rna2370|organism=Nannochloropsis gaditana|type=CDS|length=333bp|location=Sequence derived from alignment at CM002459.1:218779..219282+ (Nannochloropsis gaditana)
ATGGGGATGGACACGGGCATGTTGGGcgcggtggggggaaggctTCGAAT
CCCGGGAGCCAAGGAGCAACGCCAAAGCgtagggaaaaaaaagaaggcgG
AGCTGGCCAAGATGtcaggggcgggggcaggggccgggggagggcgggtg
tTGTCGATGGGGGGTTCCTCGGGCGCGACGAATGgaatggcctcctcctt
ggtatTCACGCCCACGCAAGGTTTGGAGCTGATGAACCCGatcgcggcgg
aggagaagagacgGAGGGTAGACGAAGCGAACAAGTCCTGGTTCGATTCC
TCCAGCGGATTCATGAGCGCCAAGCCCCGTTGA
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Synonyms
Publications