EWM28311.1, cds2362 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|585110657|gb|EWM28311.1| (u4 u6 small nuclear ribonucleoprotein prp31 [Nannochloropsis gaditana]) HSP 1 Score: 216.083 bits (549), Expect = 5.652e-71 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0 Query: 1 MGMDTGMLGAVGGRLRIPGAKEQRQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR 110 MGMDTGMLGAVGGRLRIPGAKEQRQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR Sbjct: 1 MGMDTGMLGAVGGRLRIPGAKEQRQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR 110
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|299471993|emb|CBN80076.1| (Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Ectocarpus siliculosus]) HSP 1 Score: 96.2857 bits (238), Expect = 5.134e-21 Identity = 60/111 (54.05%), Postives = 70/111 (63.06%), Query Frame = 0 Query: 1 MGMDTGMLGAVG-GRLRIPGAKEQRQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR 110 MG D GMLG G GR+R P KE +Q+V KK K +A +S SG TNG+ SSLVFTP QGLEL+NP A +EK +V ANK WFDSSSGFMSAKP+ Sbjct: 446 MGKDYGMLGKSGSGRVRAPMKKEMKQNVSKKLK--VANLS-----------------SGQTNGLNSSLVFTPIQGLELVNPNADKEK--KVMAANKKWFDSSSGFMSAKPK 535
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|224002655|ref|XP_002290999.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972775|gb|EED91106.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 77.411 bits (189), Expect = 2.184e-14 Identity = 53/110 (48.18%), Postives = 63/110 (57.27%), Query Frame = 0 Query: 1 MGMDTGMLGAVGGRLRIPGAKEQRQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR 110 MG+ GML G GA R +V KKK M A A R + M SSGATNG+ASS+VFTP QGLEL+NP A +E RV AN WF S++GF SA P+ Sbjct: 409 MGLTLGMLSTKEG-----GA--MRNTVEKKK------MRQANTKASRKRAIQM--SSGATNGLASSMVFTPVQGLELVNPDANKE---RVRAANAKWFQSNAGFQSALPK 500
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|397583914|gb|EJK52834.1| (hypothetical protein THAOC_27859 [Thalassiosira oceanica]) HSP 1 Score: 73.9442 bits (180), Expect = 3.715e-13 Identity = 51/110 (46.36%), Postives = 62/110 (56.36%), Query Frame = 0 Query: 1 MGMDTGMLGAVGGRLRIPGAKEQRQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR 110 MG+ GML G GA RQ+V K+K M A A R + M SSG TNG+ASS+VFTP QGLEL+NP A +E RV +AN WF +GF SA P+ Sbjct: 944 MGLTLGMLDTKEG-----GA--MRQTVEKRK------MRQANTKASRKRAVQM--SSGTTNGLASSMVFTPVQGLELVNPDANKE---RVRKANAKWFSEMAGFESALPK 1035
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|1210530583|dbj|GAX10808.1| (U4/U6 small nuclear ribonucleoprotein PRP31 [Fistulifera solaris]) HSP 1 Score: 70.4774 bits (171), Expect = 5.868e-12 Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 0 Query: 28 GKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR 110 G +K E KM A A R M + T+G+ASS+VFTP QG+EL+NP A +E RV EAN+ WF ++GFMSA P+ Sbjct: 411 GIRKTTEKRKMKQANTKASRKRAAQMNAKT-TTSGLASSMVFTPVQGMELVNPDANKE---RVAEANRKWFGDNAGFMSALPK 489
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|698812870|ref|XP_009839464.1| (hypothetical protein H257_13592 [Aphanomyces astaci] >gi|574105695|gb|ETV71218.1| hypothetical protein H257_13592 [Aphanomyces astaci]) HSP 1 Score: 66.6254 bits (161), Expect = 1.297e-10 Identity = 44/107 (41.12%), Postives = 58/107 (54.21%), Query Frame = 0 Query: 1 MGMDTGMLGAVG-GRLRIPGAKEQRQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMS 106 MG+ G LGA G G+LR+ + K +K L K+ A + S G+A+SL FTP QG+ELMNP AA E RV EANK +F++ +GFMS Sbjct: 407 MGITVGRLGAEGSGQLRV---------IKKAQKQTLLKLKAASYASQKNHQQS---------GLATSLAFTPVQGIELMNPSAAAE---RVREANKKYFNAQNGFMS 492
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|301117294|ref|XP_002906375.1| (U4/U6 small nuclear ribonucleoprotein Prp31 [Phytophthora infestans T30-4] >gi|262107724|gb|EEY65776.1| U4/U6 small nuclear ribonucleoprotein Prp31 [Phytophthora infestans T30-4]) HSP 1 Score: 66.2402 bits (160), Expect = 1.874e-10 Identity = 47/108 (43.52%), Postives = 59/108 (54.63%), Query Frame = 0 Query: 1 MGMDTGMLGAVG-GRLRIPGAKEQRQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSA 107 MG+ +G LG G G LRI KEQ+QS K + A A S +G+ASSL FTP QG+ELMNP AA + RV EANK +F ++SGF+S Sbjct: 438 MGITSGRLGQEGSGNLRI-MRKEQKQSSKKLRAANFAAFSA----------------KPPLSGLASSLAFTPVQGIELMNPEAA---KARVAEANKKYFSAASGFVSV 525
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|673031438|ref|XP_008869680.1| (hypothetical protein H310_06403 [Aphanomyces invadans] >gi|574474831|gb|ETW01832.1| hypothetical protein H310_06403 [Aphanomyces invadans]) HSP 1 Score: 65.4698 bits (158), Expect = 3.495e-10 Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 0 Query: 1 MGMDTGMLGAVG-GRLRIPGAKEQRQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMS 106 MG+ G LGA G G+LR+ K Q+Q++ K K A A + +G+A+SL FTP QG+ELMNP AA E RV EANK +F++ +GF+S Sbjct: 406 MGITVGRLGAEGSGQLRVIK-KAQKQTLLKLKAASFA-----------------SQKNHQQSGLATSLAFTPVQGIELMNPSAAAE---RVREANKKYFNAQNGFVS 491
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|1191562018|gb|OTF72342.1| (U4/U6 small nuclear ribonucleoprotein Prp31-like protein [Euroglyphus maynei]) HSP 1 Score: 65.0846 bits (157), Expect = 5.521e-10 Identity = 42/112 (37.50%), Postives = 59/112 (52.68%), Query Frame = 0 Query: 1 MGMDTGMLGAVG-GRLRIPGAKEQ-RQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR 110 +G TG +G G GR+R P E+ + + K + L + G R +G AS++ FTP QGLE+ NP+AAE+K V+EAN +F SSGF S KP+ Sbjct: 394 LGFTTGQMGKSGSGRIRGPQIDEKTKVRISKTLQKNLQRHQQVFGGTTTVR--------KQVSGTASTIAFTPKQGLEINNPLAAEKK---VNEANAKYFSKSSGFFSVKPK 494
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|934153916|gb|KPM04642.1| (U4/U6 small nuclear ribonucleoprotein Prp31-like protein [Sarcoptes scabiei]) HSP 1 Score: 63.5438 bits (153), Expect = 1.805e-9 Identity = 39/112 (34.82%), Postives = 60/112 (53.57%), Query Frame = 0 Query: 1 MGMDTGMLG-AVGGRLRIPGAKEQRQ-SVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR 110 +G G +G + GGR+R P E+ + + K + L + G R +G AS++ FTP QGLE+ NP+AAE+K ++EAN +F +S+GF S KP+ Sbjct: 390 LGFSAGQMGKSSGGRIRAPQIDEKTKVRISKTLQKNLQRQHQVFGGTTTIR--------KHVSGTASTIAFTPKQGLEINNPMAAEKK---INEANVKYFSNSNGFYSVKPK 490 The following BLAST results are available for this feature:
BLAST of EWM28311.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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