EWM28311.1, cds2362 (CDS) Nannochloropsis gaditana

Overview
NameEWM28311.1
Unique Namecds2362
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:218950..219282 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28311.1
Productu4 u6 small nuclear ribonucleoprotein prp31
Orig transcript idgnl|cribi|Naga_102057g2.7936.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:218950..219282 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0016043cellular component organization
GO:0000244spliceosomal tri-snRNP complex assembly
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0046540U4/U6 x U5 tri-snRNP complex
Vocabulary: INTERPRO
TermDefinition
IPR027105Prp31
IPR019175Prp31_C
Homology
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|585110657|gb|EWM28311.1| (u4 u6 small nuclear ribonucleoprotein prp31 [Nannochloropsis gaditana])

HSP 1 Score: 216.083 bits (549), Expect = 5.652e-71
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0
Query:    1 MGMDTGMLGAVGGRLRIPGAKEQRQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR 110
            MGMDTGMLGAVGGRLRIPGAKEQRQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR
Sbjct:    1 MGMDTGMLGAVGGRLRIPGAKEQRQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR 110          
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|299471993|emb|CBN80076.1| (Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Ectocarpus siliculosus])

HSP 1 Score: 96.2857 bits (238), Expect = 5.134e-21
Identity = 60/111 (54.05%), Postives = 70/111 (63.06%), Query Frame = 0
Query:    1 MGMDTGMLGAVG-GRLRIPGAKEQRQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR 110
            MG D GMLG  G GR+R P  KE +Q+V KK K  +A +S                 SG TNG+ SSLVFTP QGLEL+NP A +EK  +V  ANK WFDSSSGFMSAKP+
Sbjct:  446 MGKDYGMLGKSGSGRVRAPMKKEMKQNVSKKLK--VANLS-----------------SGQTNGLNSSLVFTPIQGLELVNPNADKEK--KVMAANKKWFDSSSGFMSAKPK 535          
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|224002655|ref|XP_002290999.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972775|gb|EED91106.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 77.411 bits (189), Expect = 2.184e-14
Identity = 53/110 (48.18%), Postives = 63/110 (57.27%), Query Frame = 0
Query:    1 MGMDTGMLGAVGGRLRIPGAKEQRQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR 110
            MG+  GML    G     GA   R +V KKK      M  A   A   R + M  SSGATNG+ASS+VFTP QGLEL+NP A +E   RV  AN  WF S++GF SA P+
Sbjct:  409 MGLTLGMLSTKEG-----GA--MRNTVEKKK------MRQANTKASRKRAIQM--SSGATNGLASSMVFTPVQGLELVNPDANKE---RVRAANAKWFQSNAGFQSALPK 500          
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|397583914|gb|EJK52834.1| (hypothetical protein THAOC_27859 [Thalassiosira oceanica])

HSP 1 Score: 73.9442 bits (180), Expect = 3.715e-13
Identity = 51/110 (46.36%), Postives = 62/110 (56.36%), Query Frame = 0
Query:    1 MGMDTGMLGAVGGRLRIPGAKEQRQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR 110
            MG+  GML    G     GA   RQ+V K+K      M  A   A   R + M  SSG TNG+ASS+VFTP QGLEL+NP A +E   RV +AN  WF   +GF SA P+
Sbjct:  944 MGLTLGMLDTKEG-----GA--MRQTVEKRK------MRQANTKASRKRAVQM--SSGTTNGLASSMVFTPVQGLELVNPDANKE---RVRKANAKWFSEMAGFESALPK 1035          
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|1210530583|dbj|GAX10808.1| (U4/U6 small nuclear ribonucleoprotein PRP31 [Fistulifera solaris])

HSP 1 Score: 70.4774 bits (171), Expect = 5.868e-12
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 0
Query:   28 GKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR 110
            G +K  E  KM  A   A   R   M   +  T+G+ASS+VFTP QG+EL+NP A +E   RV EAN+ WF  ++GFMSA P+
Sbjct:  411 GIRKTTEKRKMKQANTKASRKRAAQMNAKT-TTSGLASSMVFTPVQGMELVNPDANKE---RVAEANRKWFGDNAGFMSALPK 489          
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|698812870|ref|XP_009839464.1| (hypothetical protein H257_13592 [Aphanomyces astaci] >gi|574105695|gb|ETV71218.1| hypothetical protein H257_13592 [Aphanomyces astaci])

HSP 1 Score: 66.6254 bits (161), Expect = 1.297e-10
Identity = 44/107 (41.12%), Postives = 58/107 (54.21%), Query Frame = 0
Query:    1 MGMDTGMLGAVG-GRLRIPGAKEQRQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMS 106
            MG+  G LGA G G+LR+         + K +K  L K+  A   +      S         G+A+SL FTP QG+ELMNP AA E   RV EANK +F++ +GFMS
Sbjct:  407 MGITVGRLGAEGSGQLRV---------IKKAQKQTLLKLKAASYASQKNHQQS---------GLATSLAFTPVQGIELMNPSAAAE---RVREANKKYFNAQNGFMS 492          
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|301117294|ref|XP_002906375.1| (U4/U6 small nuclear ribonucleoprotein Prp31 [Phytophthora infestans T30-4] >gi|262107724|gb|EEY65776.1| U4/U6 small nuclear ribonucleoprotein Prp31 [Phytophthora infestans T30-4])

HSP 1 Score: 66.2402 bits (160), Expect = 1.874e-10
Identity = 47/108 (43.52%), Postives = 59/108 (54.63%), Query Frame = 0
Query:    1 MGMDTGMLGAVG-GRLRIPGAKEQRQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSA 107
            MG+ +G LG  G G LRI   KEQ+QS  K + A  A  S                     +G+ASSL FTP QG+ELMNP AA   + RV EANK +F ++SGF+S 
Sbjct:  438 MGITSGRLGQEGSGNLRI-MRKEQKQSSKKLRAANFAAFSA----------------KPPLSGLASSLAFTPVQGIELMNPEAA---KARVAEANKKYFSAASGFVSV 525          
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|673031438|ref|XP_008869680.1| (hypothetical protein H310_06403 [Aphanomyces invadans] >gi|574474831|gb|ETW01832.1| hypothetical protein H310_06403 [Aphanomyces invadans])

HSP 1 Score: 65.4698 bits (158), Expect = 3.495e-10
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 0
Query:    1 MGMDTGMLGAVG-GRLRIPGAKEQRQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMS 106
            MG+  G LGA G G+LR+   K Q+Q++ K K A  A                    +   +G+A+SL FTP QG+ELMNP AA E   RV EANK +F++ +GF+S
Sbjct:  406 MGITVGRLGAEGSGQLRVIK-KAQKQTLLKLKAASFA-----------------SQKNHQQSGLATSLAFTPVQGIELMNPSAAAE---RVREANKKYFNAQNGFVS 491          
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|1191562018|gb|OTF72342.1| (U4/U6 small nuclear ribonucleoprotein Prp31-like protein [Euroglyphus maynei])

HSP 1 Score: 65.0846 bits (157), Expect = 5.521e-10
Identity = 42/112 (37.50%), Postives = 59/112 (52.68%), Query Frame = 0
Query:    1 MGMDTGMLGAVG-GRLRIPGAKEQ-RQSVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR 110
            +G  TG +G  G GR+R P   E+ +  + K  +  L +      G    R           +G AS++ FTP QGLE+ NP+AAE+K   V+EAN  +F  SSGF S KP+
Sbjct:  394 LGFTTGQMGKSGSGRIRGPQIDEKTKVRISKTLQKNLQRHQQVFGGTTTVR--------KQVSGTASTIAFTPKQGLEINNPLAAEKK---VNEANAKYFSKSSGFFSVKPK 494          
BLAST of EWM28311.1 vs. NCBI_GenBank
Match: gi|934153916|gb|KPM04642.1| (U4/U6 small nuclear ribonucleoprotein Prp31-like protein [Sarcoptes scabiei])

HSP 1 Score: 63.5438 bits (153), Expect = 1.805e-9
Identity = 39/112 (34.82%), Postives = 60/112 (53.57%), Query Frame = 0
Query:    1 MGMDTGMLG-AVGGRLRIPGAKEQRQ-SVGKKKKAELAKMSGAGAGAGGGRVLSMGGSSGATNGMASSLVFTPTQGLELMNPIAAEEKRRRVDEANKSWFDSSSGFMSAKPR 110
            +G   G +G + GGR+R P   E+ +  + K  +  L +      G    R           +G AS++ FTP QGLE+ NP+AAE+K   ++EAN  +F +S+GF S KP+
Sbjct:  390 LGFSAGQMGKSSGGRIRAPQIDEKTKVRISKTLQKNLQRQHQVFGGTTTIR--------KHVSGTASTIAFTPKQGLEINNPMAAEKK---INEANVKYFSNSNGFYSVKPK 490          
The following BLAST results are available for this feature:
BLAST of EWM28311.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110657|gb|EWM28311.1|5.652e-71100.00u4 u6 small nuclear ribonucleoprotein prp31 [Nanno... [more]
gi|299471993|emb|CBN80076.1|5.134e-2154.05Pre-mRNA processing ribonucleoprotein, binding reg... [more]
gi|224002655|ref|XP_002290999.1|2.184e-1448.18predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397583914|gb|EJK52834.1|3.715e-1346.36hypothetical protein THAOC_27859 [Thalassiosira oc... [more]
gi|1210530583|dbj|GAX10808.1|5.868e-1246.99U4/U6 small nuclear ribonucleoprotein PRP31 [Fistu... [more]
gi|698812870|ref|XP_009839464.1|1.297e-1041.12hypothetical protein H257_13592 [Aphanomyces astac... [more]
gi|301117294|ref|XP_002906375.1|1.874e-1043.52U4/U6 small nuclear ribonucleoprotein Prp31 [Phyto... [more]
gi|673031438|ref|XP_008869680.1|3.495e-1041.12hypothetical protein H310_06403 [Aphanomyces invad... [more]
gi|1191562018|gb|OTF72342.1|5.521e-1037.50U4/U6 small nuclear ribonucleoprotein Prp31-like p... [more]
gi|934153916|gb|KPM04642.1|1.805e-934.82U4/U6 small nuclear ribonucleoprotein Prp31-like p... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2370rna2370Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications