rna2369, rna2369 (mRNA) Nannochloropsis gaditana

Overview
Namerna2369
Unique Namerna2369
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1633
Alignment locationCM002459.1:218239..218677 +

Link to JBrowse

Properties
Property NameValue
Productu4 u6 small nuclear ribonucleoprotein prp31
Orig transcript idgnl|cribi|Naga_102057g1.7937.mrna
Orig protein idgnl|cribi|Naga_102057g1.7937
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:218239..218677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102057g1gene2264Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2369rna2369-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28312.1cds2361Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2369 ID=rna2369|Name=rna2369|organism=Nannochloropsis gaditana|type=mRNA|length=1633bp
GTGGTTGGGGGCAGGCGGCACTGGGTCTTCTGTTGCTAAGCCTGCGGAGC
AAGTTTTTTGTTCATGGGGGCGTGGAAGGTCCTTATGCTTGTAGGTGTTA
GTAATATAGCATGTTTTCGGGTCATTGATGGTGGAATTTGAAAGAGGGTG
CTTGGAGCCACCCACGCCTGTGGAAGCACCAATCGCCCATTTGACTAGCT
TAAGACCATCCACCATATCTCATATATGGGACTCAAATCTATCAAGAAGG
TGTCGCGAGGCGCTTTAAGAGCCATTGATGAGGAGGGTTTGTGAGCTTGT
GGGTTCTGTGGCTTACAGACGCGGGTGCAGCGCAGGGAGAAATCCCGTAC
CACCACCATACACCCTCCCTGTTCGACGCATTTTTGGATGGTAGTGTATT
TATGATTCACATTGTCACGCACACGCTTATACTTGTGCACAGGAGTCATA
ATCATGGCCGAGGTCGAGATTGATGAAACCGTGCCCTATGAGCCCGCGGA
TATGGCTGTCGCCTTCGAGGACAACAGCGCAGACATCAAGCTGTTCGGAA
AATGGAGTCTGTCCGACGTTGAGATCAAGGATCTTTCGCTGGAGGATTAC
ATTGGCGTGAATGGCAAGTGCGCCACCTACCTGCCGCACACAGCCGGCCG
CTACCAGAAGAAACGCTTCCGAAAGGCTCAGTGCCCTGTGGTCGAACGCC
TGGCGAATTCCCTGATGCGCAAGGGAAGGAACAGTGGGAAGAAACTGACG
GCCAACCGGATCGTCAAGCACACGCTTGAGATCATCCACCTCTTGACGGA
TCAGAACCCGGTGCAGGTGGTGGTAGACAGCATCATCAACGCGGGGCCTC
GCGAGGACTCCACCCGGGTGGGGTCTGCGGGCGTTGTGCGACGGCAGGCT
GTGGACATGTCTCCCTTCCGACGGGTCAATCAAGCCATCTACCTGATCAC
TACTGGGGCGCGTGAGTCGTCCTTCAGGAACATCAAGACCATCGCGGAGA
CGCTGGCCGATGAGATTATTAATGCCGCGAAGGGGAGCTCCAACTCGTAC
GCCATCAAGAAGAAGGACGAGGTGGAGCGCGTGGCGAAGGCGAACAGATA
AAGCTGGGCGACGTGATAGGGAGGAAGGGGGGGGGGGAGGAGAGGAAGGC
TCCGCACGCTGATGAGAAGGAATGGCCTAGACTGTGTGCGGAAGGGAGGA
GCGCTGTGGTGTTGTGGGCAGGAAGAATAGAGTCCTCTGTTTCAGTCCAT
GTTGAGCCGTGTCGCAGCCCCAGAGCTTGCCGAGGTGGTAGATTGACATG
TCTGCATCCGATGTATGGAAGAGATACCTGATCGCACGTGAACAAGCGCG
AAGTGACAGATAAAAGGGAGTAGTGGTATCAGCTTCGAGGTTTCTGGTCT
CTGTCGTGGCGTCCTTAAAAGAAGAAAGAGCAGAAGGGCATGCGGGTCTG
TGGATTTTGTGTGCTTGTTTTAGCGCTTTAAGCTCTGACATCATCCTGCT
CCTCTTTATCCAACTAACTGTCACCCTCACCATCACTTCTTATCAGTCCC
ATGAAGCCCCATCTCATTCCGCGTCCTCTTTCTTCGCCTCTCCTAGGCCC
CCATAGCGATCCGGCCGTACTTACGACGCCACG
back to top

protein sequence of rna2369

>rna2369-protein ID=rna2369-protein|Name=rna2369|organism=Nannochloropsis gaditana|type=polypeptide|length=136bp
MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVAL
TARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKA
LPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGRR
back to top

mRNA from alignment at CM002459.1:218239..218677+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2369 ID=rna2369|Name=rna2369|organism=Nannochloropsis gaditana|type=mRNA|length=439bp|location=Sequence derived from alignment at CM002459.1:218239..218677+ (Nannochloropsis gaditana)
ATGGgccaggaaaaaaagagcCTGCAGGGTCTAGCGGCGGCCCAAGGGAT
TCCCCATGCGGGCGTATTGATCGGCTGCGAGGTGGTGCTCGGagccccgc
ctgccttgcGCCAAAAAGCGCTGCGGCTGGTGGCGAGCAAGGTGGCTTTG
ACCGCCCGGATGGACGCGTACcagccggagggggagggtgggagggaggg
cgggagggagaagggggcgggaggcagggccttGCGGGCGGAGTGTGAGG
ACAAGATTTTGAAATGGCAGGAGCCAtcgaaagggaaggagaagaaagcg
cTTCCGGTCCCAGAGATGTCGGCGCGGAAGAAACGGGCGGGCAAGCGCGT
GaccaaggcgaaggagaagtTTGCCATGACGGAGATGCGGAAGGAGTACG
GACGACGgtgagcagggagggagggagggagggagggag
back to top

Coding sequence (CDS) from alignment at CM002459.1:218239..218677+

>rna2369 ID=rna2369|Name=rna2369|organism=Nannochloropsis gaditana|type=CDS|length=411bp|location=Sequence derived from alignment at CM002459.1:218239..218677+ (Nannochloropsis gaditana)
ATGGgccaggaaaaaaagagcCTGCAGGGTCTAGCGGCGGCCCAAGGGAT
TCCCCATGCGGGCGTATTGATCGGCTGCGAGGTGGTGCTCGGagccccgc
ctgccttgcGCCAAAAAGCGCTGCGGCTGGTGGCGAGCAAGGTGGCTTTG
ACCGCCCGGATGGACGCGTACcagccggagggggagggtgggagggaggg
cgggagggagaagggggcgggaggcagggccttGCGGGCGGAGTGTGAGG
ACAAGATTTTGAAATGGCAGGAGCCAtcgaaagggaaggagaagaaagcg
cTTCCGGTCCCAGAGATGTCGGCGCGGAAGAAACGGGCGGGCAAGCGCGT
GaccaaggcgaaggagaagtTTGCCATGACGGAGATGCGGAAGGAGTACG
GACGACGgtga
back to top
Synonyms
Publications