EWM28312.1, cds2361 (CDS) Nannochloropsis gaditana

Overview
NameEWM28312.1
Unique Namecds2361
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:218239..218649 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28312.1
Productu4 u6 small nuclear ribonucleoprotein prp31
Orig transcript idgnl|cribi|Naga_102057g1.7937.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:218239..218649 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0016043cellular component organization
GO:0000244spliceosomal tri-snRNP complex assembly
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0046540U4/U6 x U5 tri-snRNP complex
Vocabulary: INTERPRO
TermDefinition
IPR027105Prp31
IPR002687Nop_dom
IPR019175Prp31_C
Homology
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|585110658|gb|EWM28312.1| (u4 u6 small nuclear ribonucleoprotein prp31 [Nannochloropsis gaditana])

HSP 1 Score: 265.003 bits (676), Expect = 1.529e-89
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0
Query:    1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGRR 136
            MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGRR
Sbjct:    1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGRR 136          
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|299471993|emb|CBN80076.1| (Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Ectocarpus siliculosus])

HSP 1 Score: 123.25 bits (308), Expect = 2.818e-30
Identity = 67/135 (49.63%), Postives = 84/135 (62.22%), Query Frame = 0
Query:    1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGR 135
            MGQEKK+L G ++   + HAG+L   +VV  APP LR KALR+ A+KV+L +R D+Y         G    G  GR  RAE EDKI KWQE    K KKALP P+    +KR G+RV   K+KFAMT++RKE  R
Sbjct:  306 MGQEKKTLSGFSSKATVSHAGLLYQSDVVQLAPPYLRTKALRVTAAKVSLASRFDSY---------GNDPSGHVGRQWRAEVEDKIEKWQEMQTAKTKKALPKPDDMPARKRGGRRVRSFKQKFAMTDVRKEANR 431          
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|1026769367|gb|OAE29305.1| (hypothetical protein AXG93_3102s1320 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 110.538 bits (275), Expect = 1.140e-25
Identity = 59/135 (43.70%), Postives = 79/135 (58.52%), Query Frame = 0
Query:    1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGR 135
            +G +KK+L G + A  +PH G +   E+V   PPALR +A RLVA K  L AR+D+ +         G      GR LR E   KI KWQEP   K+ K LPVP+   +KKR G+R+ K KE++A+T+MRK   R
Sbjct:  290 LGAKKKNLAGFSTATALPHTGFVFHTEIVQSTPPALRTRACRLVAGKSTLAARVDSTR---------GDPTAKTGRDLREEIRKKIEKWQEPPPAKQPKPLPVPDSDPKKKRGGRRLRKMKERYALTDMRKLANR 415          
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|952529526|gb|KRT83020.1| (hypothetical protein AMK59_4845 [Oryctes borbonicus])

HSP 1 Score: 108.227 bits (269), Expect = 6.237e-25
Identity = 62/135 (45.93%), Postives = 80/135 (59.26%), Query Frame = 0
Query:    1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGR 135
            +GQ+KK+L G + A  +PH G +   E+V   PP LR+KA RLVA+K  L AR+DA     +G           GR LR E E K+ K QEP   K  K LP P  +++KKR GKRV K KE++AMTE+RK   R
Sbjct:  255 LGQQKKTLSGFSQATMLPHTGFVYYSEIVQNTPPDLRRKASRLVATKCTLAARVDACHESPDGHI---------GRMLRDEIEKKLDKLQEPPPVKFVKPLPKPIETSKKKRGGKRVRKMKERYAMTELRKNANR 380          
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|449671160|ref|XP_002156371.2| (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Hydra vulgaris])

HSP 1 Score: 107.457 bits (267), Expect = 1.323e-24
Identity = 61/137 (44.53%), Postives = 85/137 (62.04%), Query Frame = 0
Query:    1 MGQEKKSLQG--LAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGR 135
            +G +KK+L G  +A+AQ +PH G +   ++V   PP LR+KA R VA+K  L AR+D++    +G         + G+ L  E E K  KWQEP   KE KALP P+ + R+KR G+RV K KEKFA+TEMR++  R
Sbjct:  248 LGSQKKTLAGFSMASAQVMPHTGFVYYSDIVQSLPPYLRRKAARQVAAKFTLAARIDSFHESLDG---------SAGQKLLEEIERKFEKWQEPPPVKEVKALPRPDDAPRQKRGGRRVRKMKEKFAVTEMRRQASR 375          
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|1133422600|ref|XP_019866967.1| (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Aethina tumida])

HSP 1 Score: 105.916 bits (263), Expect = 3.751e-24
Identity = 63/135 (46.67%), Postives = 78/135 (57.78%), Query Frame = 0
Query:    1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGR 135
            +GQ+KK+L G +    +PH G +   E+V   PP LR+KA RLVA+K  L AR+DA   E   GR         GR LR E E K+ K QEP   K  K LP P   ++KKR GKRV K KE++AMTE RK   R
Sbjct:  255 LGQQKKTLSGFSQTSMLPHTGFVYFTEIVQNTPPDLRRKAARLVATKSTLAARVDACH-EASDGR--------IGRQLRDEIERKLDKLQEPPPVKFVKPLPKPIDQSKKKRGGKRVRKMKERYAMTEFRKHANR 380          
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|1080051971|ref|XP_018567512.1| (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Anoplophora glabripennis])

HSP 1 Score: 105.916 bits (263), Expect = 4.700e-24
Identity = 62/135 (45.93%), Postives = 77/135 (57.04%), Query Frame = 0
Query:    1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGR 135
            +GQ+KKSL G +    +PH G +   E+V   PP LR+KA RLVA+K  L AR+DA     +G           GR LR E E K+ K QEP   K  K LP P    +KKR GKRV K KE++AMTE RK+  R
Sbjct:  257 LGQQKKSLSGFSQTTMLPHTGFVYYSEIVQNTPPDLRRKAARLVATKCTLAARVDACHESADG---------RIGRMLRDEIERKLDKLQEPPPVKFVKPLPKPIDQPKKKRGGKRVRKMKERYAMTEFRKQANR 382          
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|321450311|gb|EFX62378.1| (hypothetical protein DAPPUDRAFT_337041, partial [Daphnia pulex])

HSP 1 Score: 102.449 bits (254), Expect = 6.610e-24
Identity = 55/135 (40.74%), Postives = 77/135 (57.04%), Query Frame = 0
Query:    1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGR 135
            +G +K++L G +    +PH G +    +V   PP LR+KA RLV+SK  L AR+DA+    +G         + GR  R + E K+ + QEP   K  + LP P  + RKKR GKRV + KEK+A TEMRK+  R
Sbjct:   33 LGNQKRTLSGFSQTATLPHTGFIFESPIVQDTPPDLRRKAARLVSSKCTLAARVDAFHESTDG---------SVGRNFREDVERKLDRLQEPPPVKAIRPLPAPLEAPRKKRGGKRVRRMKEKYAQTEMRKQANR 158          
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|697171968|ref|XP_009594919.1| (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 isoform X2 [Nicotiana tomentosiformis])

HSP 1 Score: 103.219 bits (256), Expect = 2.879e-23
Identity = 57/135 (42.22%), Postives = 79/135 (58.52%), Query Frame = 0
Query:    1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGR 135
            +G +KK+L G + A    H G +   E    APP+LR +A+RL+A+K  L AR+D+           G   G  GR LR E + KI KWQEP   K+ K LPVP+   +KKR G+R+ K KE++A+T+MRK   R
Sbjct:  220 LGAKKKTLAGFSTATSQFHVGYIEQTETFQSAPPSLRMRAVRLLAAKSTLAARVDSI---------SGDPTGKTGRTLREEIQKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDMRKLANR 345          
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|697171966|ref|XP_009594918.1| (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 103.219 bits (256), Expect = 3.275e-23
Identity = 57/135 (42.22%), Postives = 79/135 (58.52%), Query Frame = 0
Query:    1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGR 135
            +G +KK+L G + A    H G +   E    APP+LR +A+RL+A+K  L AR+D+           G   G  GR LR E + KI KWQEP   K+ K LPVP+   +KKR G+R+ K KE++A+T+MRK   R
Sbjct:  252 LGAKKKTLAGFSTATSQFHVGYIEQTETFQSAPPSLRMRAVRLLAAKSTLAARVDSI---------SGDPTGKTGRTLREEIQKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDMRKLANR 377          
The following BLAST results are available for this feature:
BLAST of EWM28312.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110658|gb|EWM28312.1|1.529e-89100.00u4 u6 small nuclear ribonucleoprotein prp31 [Nanno... [more]
gi|299471993|emb|CBN80076.1|2.818e-3049.63Pre-mRNA processing ribonucleoprotein, binding reg... [more]
gi|1026769367|gb|OAE29305.1|1.140e-2543.70hypothetical protein AXG93_3102s1320 [Marchantia p... [more]
gi|952529526|gb|KRT83020.1|6.237e-2545.93hypothetical protein AMK59_4845 [Oryctes borbonicu... [more]
gi|449671160|ref|XP_002156371.2|1.323e-2444.53PREDICTED: U4/U6 small nuclear ribonucleoprotein P... [more]
gi|1133422600|ref|XP_019866967.1|3.751e-2446.67PREDICTED: U4/U6 small nuclear ribonucleoprotein P... [more]
gi|1080051971|ref|XP_018567512.1|4.700e-2445.93PREDICTED: U4/U6 small nuclear ribonucleoprotein P... [more]
gi|321450311|gb|EFX62378.1|6.610e-2440.74hypothetical protein DAPPUDRAFT_337041, partial [D... [more]
gi|697171968|ref|XP_009594919.1|2.879e-2342.22PREDICTED: U4/U6 small nuclear ribonucleoprotein P... [more]
gi|697171966|ref|XP_009594918.1|3.275e-2342.22PREDICTED: U4/U6 small nuclear ribonucleoprotein P... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2369rna2369Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications