EWM28312.1, cds2361 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|585110658|gb|EWM28312.1| (u4 u6 small nuclear ribonucleoprotein prp31 [Nannochloropsis gaditana]) HSP 1 Score: 265.003 bits (676), Expect = 1.529e-89 Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0
Query: 1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGRR 136
MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGRR
Sbjct: 1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGRR 136
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|299471993|emb|CBN80076.1| (Pre-mRNA processing ribonucleoprotein, binding region; NOSIC [Ectocarpus siliculosus]) HSP 1 Score: 123.25 bits (308), Expect = 2.818e-30 Identity = 67/135 (49.63%), Postives = 84/135 (62.22%), Query Frame = 0
Query: 1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGR 135
MGQEKK+L G ++ + HAG+L +VV APP LR KALR+ A+KV+L +R D+Y G G GR RAE EDKI KWQE K KKALP P+ +KR G+RV K+KFAMT++RKE R
Sbjct: 306 MGQEKKTLSGFSSKATVSHAGLLYQSDVVQLAPPYLRTKALRVTAAKVSLASRFDSY---------GNDPSGHVGRQWRAEVEDKIEKWQEMQTAKTKKALPKPDDMPARKRGGRRVRSFKQKFAMTDVRKEANR 431
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|1026769367|gb|OAE29305.1| (hypothetical protein AXG93_3102s1320 [Marchantia polymorpha subsp. ruderalis]) HSP 1 Score: 110.538 bits (275), Expect = 1.140e-25 Identity = 59/135 (43.70%), Postives = 79/135 (58.52%), Query Frame = 0
Query: 1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGR 135
+G +KK+L G + A +PH G + E+V PPALR +A RLVA K L AR+D+ + G GR LR E KI KWQEP K+ K LPVP+ +KKR G+R+ K KE++A+T+MRK R
Sbjct: 290 LGAKKKNLAGFSTATALPHTGFVFHTEIVQSTPPALRTRACRLVAGKSTLAARVDSTR---------GDPTAKTGRDLREEIRKKIEKWQEPPPAKQPKPLPVPDSDPKKKRGGRRLRKMKERYALTDMRKLANR 415
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|952529526|gb|KRT83020.1| (hypothetical protein AMK59_4845 [Oryctes borbonicus]) HSP 1 Score: 108.227 bits (269), Expect = 6.237e-25 Identity = 62/135 (45.93%), Postives = 80/135 (59.26%), Query Frame = 0
Query: 1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGR 135
+GQ+KK+L G + A +PH G + E+V PP LR+KA RLVA+K L AR+DA +G GR LR E E K+ K QEP K K LP P +++KKR GKRV K KE++AMTE+RK R
Sbjct: 255 LGQQKKTLSGFSQATMLPHTGFVYYSEIVQNTPPDLRRKASRLVATKCTLAARVDACHESPDGHI---------GRMLRDEIEKKLDKLQEPPPVKFVKPLPKPIETSKKKRGGKRVRKMKERYAMTELRKNANR 380
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|449671160|ref|XP_002156371.2| (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31-like [Hydra vulgaris]) HSP 1 Score: 107.457 bits (267), Expect = 1.323e-24 Identity = 61/137 (44.53%), Postives = 85/137 (62.04%), Query Frame = 0
Query: 1 MGQEKKSLQG--LAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGR 135
+G +KK+L G +A+AQ +PH G + ++V PP LR+KA R VA+K L AR+D++ +G + G+ L E E K KWQEP KE KALP P+ + R+KR G+RV K KEKFA+TEMR++ R
Sbjct: 248 LGSQKKTLAGFSMASAQVMPHTGFVYYSDIVQSLPPYLRRKAARQVAAKFTLAARIDSFHESLDG---------SAGQKLLEEIERKFEKWQEPPPVKEVKALPRPDDAPRQKRGGRRVRKMKEKFAVTEMRRQASR 375
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|1133422600|ref|XP_019866967.1| (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Aethina tumida]) HSP 1 Score: 105.916 bits (263), Expect = 3.751e-24 Identity = 63/135 (46.67%), Postives = 78/135 (57.78%), Query Frame = 0
Query: 1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGR 135
+GQ+KK+L G + +PH G + E+V PP LR+KA RLVA+K L AR+DA E GR GR LR E E K+ K QEP K K LP P ++KKR GKRV K KE++AMTE RK R
Sbjct: 255 LGQQKKTLSGFSQTSMLPHTGFVYFTEIVQNTPPDLRRKAARLVATKSTLAARVDACH-EASDGR--------IGRQLRDEIERKLDKLQEPPPVKFVKPLPKPIDQSKKKRGGKRVRKMKERYAMTEFRKHANR 380
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|1080051971|ref|XP_018567512.1| (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Anoplophora glabripennis]) HSP 1 Score: 105.916 bits (263), Expect = 4.700e-24 Identity = 62/135 (45.93%), Postives = 77/135 (57.04%), Query Frame = 0
Query: 1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGR 135
+GQ+KKSL G + +PH G + E+V PP LR+KA RLVA+K L AR+DA +G GR LR E E K+ K QEP K K LP P +KKR GKRV K KE++AMTE RK+ R
Sbjct: 257 LGQQKKSLSGFSQTTMLPHTGFVYYSEIVQNTPPDLRRKAARLVATKCTLAARVDACHESADG---------RIGRMLRDEIERKLDKLQEPPPVKFVKPLPKPIDQPKKKRGGKRVRKMKERYAMTEFRKQANR 382
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|321450311|gb|EFX62378.1| (hypothetical protein DAPPUDRAFT_337041, partial [Daphnia pulex]) HSP 1 Score: 102.449 bits (254), Expect = 6.610e-24 Identity = 55/135 (40.74%), Postives = 77/135 (57.04%), Query Frame = 0
Query: 1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGR 135
+G +K++L G + +PH G + +V PP LR+KA RLV+SK L AR+DA+ +G + GR R + E K+ + QEP K + LP P + RKKR GKRV + KEK+A TEMRK+ R
Sbjct: 33 LGNQKRTLSGFSQTATLPHTGFIFESPIVQDTPPDLRRKAARLVSSKCTLAARVDAFHESTDG---------SVGRNFREDVERKLDRLQEPPPVKAIRPLPAPLEAPRKKRGGKRVRRMKEKYAQTEMRKQANR 158
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|697171968|ref|XP_009594919.1| (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 isoform X2 [Nicotiana tomentosiformis]) HSP 1 Score: 103.219 bits (256), Expect = 2.879e-23 Identity = 57/135 (42.22%), Postives = 79/135 (58.52%), Query Frame = 0
Query: 1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGR 135
+G +KK+L G + A H G + E APP+LR +A+RL+A+K L AR+D+ G G GR LR E + KI KWQEP K+ K LPVP+ +KKR G+R+ K KE++A+T+MRK R
Sbjct: 220 LGAKKKTLAGFSTATSQFHVGYIEQTETFQSAPPSLRMRAVRLLAAKSTLAARVDSI---------SGDPTGKTGRTLREEIQKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDMRKLANR 345
BLAST of EWM28312.1 vs. NCBI_GenBank
Match: gi|697171966|ref|XP_009594918.1| (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 isoform X1 [Nicotiana tomentosiformis]) HSP 1 Score: 103.219 bits (256), Expect = 3.275e-23 Identity = 57/135 (42.22%), Postives = 79/135 (58.52%), Query Frame = 0
Query: 1 MGQEKKSLQGLAAAQGIPHAGVLIGCEVVLGAPPALRQKALRLVASKVALTARMDAYQPEGEGGREGGREKGAGGRALRAECEDKILKWQEPSKGKEKKALPVPEMSARKKRAGKRVTKAKEKFAMTEMRKEYGR 135
+G +KK+L G + A H G + E APP+LR +A+RL+A+K L AR+D+ G G GR LR E + KI KWQEP K+ K LPVP+ +KKR G+R+ K KE++A+T+MRK R
Sbjct: 252 LGAKKKTLAGFSTATSQFHVGYIEQTETFQSAPPSLRMRAVRLLAAKSTLAARVDSI---------SGDPTGKTGRTLREEIQKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDMRKLANR 377 The following BLAST results are available for this feature:
BLAST of EWM28312.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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