rna2360, rna2360 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2360
Unique Name	rna2360
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1829
Alignment location	CM002459.1:185574..187838 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100109g4.6603.mrna
Orig protein id	gnl\|cribi\|Naga_100109g4.6603
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:185574..187838 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100109g4	gene2254	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28335.1	cds2352	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2360	rna2360-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:185574..187838-
coding sequence from alignment at CM002459.1:185574..187838-

mRNA sequence

>rna2360 ID=rna2360|Name=rna2360|organism=Nannochloropsis gaditana|type=mRNA|length=1829bp
GAATTACATCAGTGCCTCTATTCACGCGTGCTCAGTAGAAGTCTTTCATC
TTTTTAAAAAAAATTGAATAGCACGTTTGTTATCATTTGAAGCGTTGCCG
TTGCGGAGGCCGACGCCTTTCAAGGTATTGGGAGTAGCAGCAGCTTCAAG
GGAACAGGATCACAGAACGATGACATCCTCTTCCTCCTCTTTGATGGAAG
AAACCACCAAGAAAGTTCCCTTGTCGTCCGAGATAAAGCGCACGCGTCCA
GCATTGCAGTATCAATCAGGCTTTGGCAACCATTTCAGCACCGAGGCAAT
ACCAAATGCCCTACCTGAAGGCCAAAACACCCCGCAAACCTGCCCGTACG
GTCTCTACGCCGAGCAATTATCTGGCACGGCATTCACCGTCCCCCGCGAG
CATAACCAACGCTCCTGGTTGTATCGCATTCGGCCGTCCGTGGTCCAATC
CCGTTTCATTCCTGTGGCTTCCTCCCTCTCTCGCCTTGGCCTGCTCAACA
AGCCGGAGGTCACCACGCCGGCCATGCTGCGATGGCGCCCGTTGCCCCTG
CCTATGCCTGCATCGGATCCAAATGCACCCACTACGGCCGGTTCTGGGGT
TGACTTTGTAGATGGACTGGTCTGTATGATGGGGGCTGGCGACCCGGGCA
GCAAACAGGGCCTGAATGTCTTCATGTACGCAGCCGATACCTCCATGGTC
GACGTTGCCTTCCAGAATTCGGACGGAGACTTCTTGGTGGTGCCTCAGAT
GGGGACGTTACACATCCGCACCGAAATGGGCATTTTGGAGGTAGAACCAA
GGGAGATCGTGGTCTTGCCGCGTGGTATCAAGTTTCAGATCGACGTGGAC
GCCCCCTCGCGGGGGTACGTGCTGGAAGTTTTCGAGGGCCACTTCCAGCT
CCCACAGCTCGGTCCCCTGGGTGCAAACGGTTTGGCCAACCCTCGCGACT
TTAAGTACCCCGTTGCCGCCTTCCAAGACCTGGAGAGGCCTTTCCGGCTC
TTCAACAAATTTGGGGGAGAGCTTTTCGAGGCAACCCTGCCTGCTTCCCC
TTTCAACGTGGTGGCATGGCATGGCAACTATGCTCCTTTTAAATACAACC
TGGACGATTTCTGCTGCGTGGGCTCGGTGACCTATGATCATTTGGACCCT
TCCATCTTCACCGTCTTGACCTGCCCGTCCGCCGTGCCCGGTGTGGCCGT
CGCAGACTTTGTGGTCTTTCCCCCCCGATGGATGGTGATGGAGCATACCT
TCCGGCCCCCCTACTATCATCGAAACGTGATGAGCGAGTACATGGGAATG
ATCTACGGAAAGTACGACGCCAAGGAAGGCTTCCTGCCGGGGGGCGCATC
CCTCCACTCCTGCATGTCCCCCCATGGGCCCGACTTGGCTACTTTCGAGA
AGGCAACGACCGAGGCGCTGGCGCCCGTGAAATTTGAGGGAGGGCTGGCC
TTCATGTTTGAGACATGCTACGTCTTGAAATTGACCGAGTGGGCCGTGAA
CGCCCCTCATTTGGAGGAGGATTACGAAGAAAGGTGCTGGGCACGGTTGC
CTAAAAAGTTTGTAGCTCCTCAGGAAGATGGAAGCCAGAAGTAAAAGTAA
TGTGGATAATAGGTGGTGTGGAGACACGTGGCGTAGGGGAGGGGAGGTTC
CTCCGCGATGCGCAGTGCAATCAGGTGCCGAAAAGGGTGGAAAGCTAGAG
AGTTATCAAAAGAGAAAGAAGGGTACGCTTTGGCTCCTTCAGAGGGCGAT
GTAGACTGTGTTCGGAATTACAAATACAAGGGATGTAAAAAAGAGCCGAA
AATGACCGAGCAACATTTTCCCGGAAAAA

protein sequence of rna2360

>rna2360-protein ID=rna2360-protein|Name=rna2360|organism=Nannochloropsis gaditana|type=polypeptide|length=591bp
MEECAHDTEMLNKAEASGTSPSPSSLATGFFPGSTNLQVDEIYLLTRKEL
YFGPNHAHTAMALADLDGDGQQEFMVGSLDGTLAIYKGLAGRVPWAVATG
LGMLRVFSCGQLLPDCDIETQSPLSKHCSEKVSGEKGGKAQATAGTRPAR
PKQLVALTVEGDVHLFDFKNDPSLLTLTSPTKPSYAEKHGGRSSPAQHTD
VPVFSAWDTPSLSLQPSHSFTVAPNVTAALILDVDGDGCQELVLGYTDGK
LQVLGWRSAWRLTEDAGPDDSRPCSERVPGGAPVQMFEKGVATASASIVS
LSSLGADDSSERPECIAVGLEAGTIEVLRCSSGAAGDREPLLTSLVELQI
GGGLPLPRFGWSGPLTCCALPKDVDSRARGLAFAVAGLDGRMGVAVVGKE
GGGAGEESQAADEGGLGTWKTVWSVQTRHPLYTVAPLFLGTGDEGWGFAA
CAWSGLTYWVLTKASSAGQAGAEKVRVFDPSKMLMPPVRGFLAGAFGPDN
EPCLFYSCADGHIVVFHELEKQLRRLQKGTEEYEEEVAKAARELRAPETQ
ELVDAWVKVHLTQAGETAGGVDEGETPQAEVLEPEEGKGGP

mRNA from alignment at CM002459.1:185574..187838-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2360 ID=rna2360|Name=rna2360|organism=Nannochloropsis gaditana|type=mRNA|length=2265bp|location=Sequence derived from alignment at CM002459.1:185574..187838- (Nannochloropsis gaditana)
AGCGGCTTTAGCTTTCCTGACCGATCGATTTTCCACATACCGGGAACAAA
CTTGTGATCATCTGGATCATCAAACCATCTCAATCTTTGTTTTTAGAAAC
AGAGGGAATATACCACTTCACATAAACGTGATGCGTGTACAAACGCGCCA
CACTCCACACAAGCTTGAAGGGGGTGGGGAGGTTAAAACACCCCGTGAAA
AAAATCACTAAGTACGAGAATACAACCCGCCACGTTTACACAGTCATTCA
TACCCATGACTCTTGAATGCTTGGGGATGTCCAAGAGGATGATAAGTGTT
GCCTGCTTTTTGCATTTTCAGGACATGTCGTCGAACGTGACTTTCCTCAT
ATCAACCGACTTCTGTGCTTCTGGTTGCCACCCCACTCCCAGGAAATACA
TGTCGCTTATTCGCGTGAAAGCAGCTTAATTGCAGCCTAAATGGAAGAAT
GTGCACATGACACGGAGATGCTAAACAAAGCTGAGGCATCGGGTACCTCG
CCCTCGCCCTCGAGCTTGGCTACCGGATTTTTCCCCGGCTCGACCAACCT
ACAAGTCGATGAAATTTACCTTTTGACGCGGAAGGAGCTTTACTTTGGTC
CAAATCATGCCCATACTGCAATGGCTCTGGCAGATTTAGACGGCGACGGG
CAGCAGGAATTCATGGTCGGATCATTGGACGGGACCCTGGCGATCTACAA
AGGTCTTGCAGGGAGGGTACCATGGGCCGTTGCGACAGGGCTGGGGATGC
TCCGTGTCTTCTCGTGTGGGCAGCTTTTGCCGGACTGTGACATCGAGACA
CAAAGCCCCCTCTCCAAGCATTGTTCCGAGAAAGTGAGTGGAGAGAAAGG
AGGAAAGGCACAGGCAACGGCGGGGACACGACCTGCACGCCCCAAGCAGC
TAGTCGCCCTGACCGTTGAAGGCGATGTCCACCTCTTCGACTTCAAAAAC
GACCCGTCTTTGCTAACTCTAACGTCTCCGACCAAACCAAGCTACGCCGA
GAAGCACGGCGGCCGTTCCAGTCCCGCGCAGCACACAGACGTGCCCGTGT
TCTCTGCCTGGGACACGCCGTCCTTGAGTTTGCAGCCCAGCCATAGCTTT
ACCGTGGCGCCCAACGTCACAGCTGCGCTTATTTTGGATGTGGATGGGGA
TGGATGTCAGGAGCTTGTCTTAGGGTACACGGACGGGAAACTTCAAGTCC
TTGGCTGGCGCTCTGCCTGGCGGTTGACAGAGGACGCAGGGCCGGACGAT
TCCAGGCCGTGCTCGGAAAGGGTGCCCGGCGGAGCCCCCGTACAAATGTT
CGAGAAGGGCGTGGCGACGGCGTCCGCGTCGATCGTGTCGTTGTCAAGCC
TGGGGGCGGACGACTCGAGCGAAAGGCCCGAATGCATTGCGGTGGGTTTA
GAGGCGGGCACGATAGAGGTACTTAGGTGCAGCTCGGGGGCGGCGGGCGA
CCGGGAACCTCTCCTCACTTCGCTCGTCGAATTGCAGATCGGAGGTGGGC
TCCCTTTGCCACGTTTTGGCTGGTCGGGCCCCTTGACCTGTTGCGCGCTG
CCGAAAGACGTTGACAGCCGGGCCCGGGGACTCGCGTTTGCGGTGGCCGG
TTTGGACGGTCGGATGGGCGTGGCTGTGGTAGGGAAGGAGGGGGGCGGGG
CGGGGGAGGAGAGCCAGGCGGCCGACGAGGGGGGCCTTGGGACATGGAAG
ACGGTGTGGAGCGTACAGACGAGGCACCCACTCTACACTGTGGCGCCCCT
TTTTCTGGGCACTGGGGACGAAGGCTGGGGGTTCGCGGCCTGCGCCTGGA
GTGGTTTGACGTATTGGGTCTTGACGAAAGCTTCTTCTGCCGGACAAGCG
GGAGCCGAAAAGGTGCGAGTCTTCGACCCGTCCAAGATGCTCATGCCACC
CGTGCGTGGATTCCTCGCGGGGGCTTTTGGCCCGGACAACGAACCTTGTT
TGTTCTATAGCTGTGCAGACGGACATATCGTCGTCTTTCATGAGCTGGAG
AAGCAGCTGAGAAGACTGCAAAAAGGCACGGAGGAATATGAAGAGGAGGT
GGCCAAGGCTGCACGCGAGCTACGAGCCCCGGAGACGCAAGAGCTGGTGG
ATGCATGGGTAAAAGTACATTTGACACAAGCGGGGGAGACGGCGGGGGGG
GTGGACGAGGGAGAGACCCCACAAGCCGAGGTCCTCGAACCTGAGGAGGG
GAAGGGGGGGCCATAGCTCTAGACCACATCAATGTGATTTAAAAAATGTG
AACAGGCTGGTTTTT

Coding sequence (CDS) from alignment at CM002459.1:185574..187838-

>rna2360 ID=rna2360|Name=rna2360|organism=Nannochloropsis gaditana|type=CDS|length=1776bp|location=Sequence derived from alignment at CM002459.1:185574..187838- (Nannochloropsis gaditana)
ATGGAAGAATGTGCACATGACACGGAGATGCTAAACAAAGCTGAGGCATC
GGGTACCTCGCCCTCGCCCTCGAGCTTGGCTACCGGATTTTTCCCCGGCT
CGACCAACCTACAAGTCGATGAAATTTACCTTTTGACGCGGAAGGAGCTT
TACTTTGGTCCAAATCATGCCCATACTGCAATGGCTCTGGCAGATTTAGA
CGGCGACGGGCAGCAGGAATTCATGGTCGGATCATTGGACGGGACCCTGG
CGATCTACAAAGGTCTTGCAGGGAGGGTACCATGGGCCGTTGCGACAGGG
CTGGGGATGCTCCGTGTCTTCTCGTGTGGGCAGCTTTTGCCGGACTGTGA
CATCGAGACACAAAGCCCCCTCTCCAAGCATTGTTCCGAGAAAGTGAGTG
GAGAGAAAGGAGGAAAGGCACAGGCAACGGCGGGGACACGACCTGCACGC
CCCAAGCAGCTAGTCGCCCTGACCGTTGAAGGCGATGTCCACCTCTTCGA
CTTCAAAAACGACCCGTCTTTGCTAACTCTAACGTCTCCGACCAAACCAA
GCTACGCCGAGAAGCACGGCGGCCGTTCCAGTCCCGCGCAGCACACAGAC
GTGCCCGTGTTCTCTGCCTGGGACACGCCGTCCTTGAGTTTGCAGCCCAG
CCATAGCTTTACCGTGGCGCCCAACGTCACAGCTGCGCTTATTTTGGATG
TGGATGGGGATGGATGTCAGGAGCTTGTCTTAGGGTACACGGACGGGAAA
CTTCAAGTCCTTGGCTGGCGCTCTGCCTGGCGGTTGACAGAGGACGCAGG
GCCGGACGATTCCAGGCCGTGCTCGGAAAGGGTGCCCGGCGGAGCCCCCG
TACAAATGTTCGAGAAGGGCGTGGCGACGGCGTCCGCGTCGATCGTGTCG
TTGTCAAGCCTGGGGGCGGACGACTCGAGCGAAAGGCCCGAATGCATTGC
GGTGGGTTTAGAGGCGGGCACGATAGAGGTACTTAGGTGCAGCTCGGGGG
CGGCGGGCGACCGGGAACCTCTCCTCACTTCGCTCGTCGAATTGCAGATC
GGAGGTGGGCTCCCTTTGCCACGTTTTGGCTGGTCGGGCCCCTTGACCTG
TTGCGCGCTGCCGAAAGACGTTGACAGCCGGGCCCGGGGACTCGCGTTTG
CGGTGGCCGGTTTGGACGGTCGGATGGGCGTGGCTGTGGTAGGGAAGGAG
GGGGGCGGGGCGGGGGAGGAGAGCCAGGCGGCCGACGAGGGGGGCCTTGG
GACATGGAAGACGGTGTGGAGCGTACAGACGAGGCACCCACTCTACACTG
TGGCGCCCCTTTTTCTGGGCACTGGGGACGAAGGCTGGGGGTTCGCGGCC
TGCGCCTGGAGTGGTTTGACGTATTGGGTCTTGACGAAAGCTTCTTCTGC
CGGACAAGCGGGAGCCGAAAAGGTGCGAGTCTTCGACCCGTCCAAGATGC
TCATGCCACCCGTGCGTGGATTCCTCGCGGGGGCTTTTGGCCCGGACAAC
GAACCTTGTTTGTTCTATAGCTGTGCAGACGGACATATCGTCGTCTTTCA
TGAGCTGGAGAAGCAGCTGAGAAGACTGCAAAAAGGCACGGAGGAATATG
AAGAGGAGGTGGCCAAGGCTGCACGCGAGCTACGAGCCCCGGAGACGCAA
GAGCTGGTGGATGCATGGGTAAAAGTACATTTGACACAAGCGGGGGAGAC
GGCGGGGGGGGTGGACGAGGGAGAGACCCCACAAGCCGAGGTCCTCGAAC
CTGAGGAGGGGAAGGGGGGGCCATAG

Synonyms

Publications