EWM28335.1, cds2352 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28335.1 vs. NCBI_GenBank
Match: gi|585110684|gb|EWM28335.1| (hypothetical protein Naga_100109g4 [Nannochloropsis gaditana]) HSP 1 Score: 1196.03 bits (3093), Expect = 0.000e+0 Identity = 591/591 (100.00%), Postives = 591/591 (100.00%), Query Frame = 0
Query: 1 MEECAHDTEMLNKAEASGTSPSPSSLATGFFPGSTNLQVDEIYLLTRKELYFGPNHAHTAMALADLDGDGQQEFMVGSLDGTLAIYKGLAGRVPWAVATGLGMLRVFSCGQLLPDCDIETQSPLSKHCSEKVSGEKGGKAQATAGTRPARPKQLVALTVEGDVHLFDFKNDPSLLTLTSPTKPSYAEKHGGRSSPAQHTDVPVFSAWDTPSLSLQPSHSFTVAPNVTAALILDVDGDGCQELVLGYTDGKLQVLGWRSAWRLTEDAGPDDSRPCSERVPGGAPVQMFEKGVATASASIVSLSSLGADDSSERPECIAVGLEAGTIEVLRCSSGAAGDREPLLTSLVELQIGGGLPLPRFGWSGPLTCCALPKDVDSRARGLAFAVAGLDGRMGVAVVGKEGGGAGEESQAADEGGLGTWKTVWSVQTRHPLYTVAPLFLGTGDEGWGFAACAWSGLTYWVLTKASSAGQAGAEKVRVFDPSKMLMPPVRGFLAGAFGPDNEPCLFYSCADGHIVVFHELEKQLRRLQKGTEEYEEEVAKAARELRAPETQELVDAWVKVHLTQAGETAGGVDEGETPQAEVLEPEEGKGGP 591
MEECAHDTEMLNKAEASGTSPSPSSLATGFFPGSTNLQVDEIYLLTRKELYFGPNHAHTAMALADLDGDGQQEFMVGSLDGTLAIYKGLAGRVPWAVATGLGMLRVFSCGQLLPDCDIETQSPLSKHCSEKVSGEKGGKAQATAGTRPARPKQLVALTVEGDVHLFDFKNDPSLLTLTSPTKPSYAEKHGGRSSPAQHTDVPVFSAWDTPSLSLQPSHSFTVAPNVTAALILDVDGDGCQELVLGYTDGKLQVLGWRSAWRLTEDAGPDDSRPCSERVPGGAPVQMFEKGVATASASIVSLSSLGADDSSERPECIAVGLEAGTIEVLRCSSGAAGDREPLLTSLVELQIGGGLPLPRFGWSGPLTCCALPKDVDSRARGLAFAVAGLDGRMGVAVVGKEGGGAGEESQAADEGGLGTWKTVWSVQTRHPLYTVAPLFLGTGDEGWGFAACAWSGLTYWVLTKASSAGQAGAEKVRVFDPSKMLMPPVRGFLAGAFGPDNEPCLFYSCADGHIVVFHELEKQLRRLQKGTEEYEEEVAKAARELRAPETQELVDAWVKVHLTQAGETAGGVDEGETPQAEVLEPEEGKGGP
Sbjct: 1 MEECAHDTEMLNKAEASGTSPSPSSLATGFFPGSTNLQVDEIYLLTRKELYFGPNHAHTAMALADLDGDGQQEFMVGSLDGTLAIYKGLAGRVPWAVATGLGMLRVFSCGQLLPDCDIETQSPLSKHCSEKVSGEKGGKAQATAGTRPARPKQLVALTVEGDVHLFDFKNDPSLLTLTSPTKPSYAEKHGGRSSPAQHTDVPVFSAWDTPSLSLQPSHSFTVAPNVTAALILDVDGDGCQELVLGYTDGKLQVLGWRSAWRLTEDAGPDDSRPCSERVPGGAPVQMFEKGVATASASIVSLSSLGADDSSERPECIAVGLEAGTIEVLRCSSGAAGDREPLLTSLVELQIGGGLPLPRFGWSGPLTCCALPKDVDSRARGLAFAVAGLDGRMGVAVVGKEGGGAGEESQAADEGGLGTWKTVWSVQTRHPLYTVAPLFLGTGDEGWGFAACAWSGLTYWVLTKASSAGQAGAEKVRVFDPSKMLMPPVRGFLAGAFGPDNEPCLFYSCADGHIVVFHELEKQLRRLQKGTEEYEEEVAKAARELRAPETQELVDAWVKVHLTQAGETAGGVDEGETPQAEVLEPEEGKGGP 591
BLAST of EWM28335.1 vs. NCBI_GenBank
Match: gi|1133466104|ref|XP_003387535.2| (PREDICTED: integrin-alpha FG-GAP repeat-containing protein 2-like [Amphimedon queenslandica]) HSP 1 Score: 81.2629 bits (199), Expect = 1.500e-12 Identity = 112/529 (21.17%), Postives = 183/529 (34.59%), Query Frame = 0
Query: 42 IYLLTRKELYFGPNHAHTAMALADLDGDGQQEFMVGSLDGTLAIYKGLAGRVPWAVATGLGMLRVFSCGQLLPDCDIETQSPLSKHCSEKVSGEKGGKAQATAGTRPARPKQLVALTVEGDVHLFDFKNDPSLLTLTSPTKPSYAEKHGGRSSPAQHTDVPVFSAWDTPSLSLQPSHSFTVAPNVTAALILDVDGDGCQELVLGYTDGKLQVLGWRSAWRLTEDAGPDDSRPCSERVPGGAPVQMFEKG-----VATASASIVSLSSL-GADDSSERPECIAVGLEAGTIEVLRCSSGAAGDREPLLTSLVE--------------LQIGGGLPLPRFGWSGPLTCCALPKD-----------VDSRARGLAFAVAGLDGRMGVAVVGKEGGGAGEESQAADE-------------GG----LGTWKTVWSVQTRHPLYTVAPLFLGTGDEGWGFAACAWSGLTYWVLTKASSAGQAGAEKVRVFDPSKMLMPPVRGFLAGAFG---PDNEPCLFYSCADGHIVVFHEL 519
+ + R EL F NH A+ L D+DGDG EF++G+++G L+++KG PW ATGLG + + G L GK QL+ + G ++F S + G P ++P PN+ +I + D +EL +G+TD + V W + + E R ER G V M G V+ + V L + +D ++ + T ++ S GD+E + +E L+ + R +G + + ++ + SR R + G+ R + V + G +S DE GG + K +W Q H L+ ++ L + T D C+W+G+TY +L + + + E V F AG FG N+P L YS I V+H +
Sbjct: 6 VSFVDRLELEFTGNHFSHALTLGDVDGDGLNEFIIGNVEGQLSVFKGNTSGKPWRSATGLGSITCVTTGDLF----------------------NTGKV------------QLICINAMGMCYIFSLYR-------------SSKSRTGSAVEPVHTQELP---------------------PNIKVMIIASIAPDNKEELFVGHTDRYIGVYRWTNDFNRLELR----HRLTLERQIGSLSVTMTSDGRSQLLVSQVGGTYVPLEYVENVEDLFPSISSSSMLSDNSTKDIQDSSDTGRGDKENYINMSLENEPEEKRRASDSVSLKQNKTPKVSRHSSTGDVLETKIRRNSSRSSFKGSESLLSRYRLHVNGIVGIAQRNSPSSVTEAVGDLTSKSDLFDEEQKHSNIVALCTLGGCIRFMKDEKKIWEHQVDHNLFAISKLDV-TNDGQDEIIVCSWNGVTY-ILDHSRNVVRYKFE------------DNVCAFCAGMFGFTSEHNKPVLIYSTFFNKIYVYHNI 448
BLAST of EWM28335.1 vs. NCBI_GenBank
Match: gi|1072246397|ref|XP_018407899.1| (PREDICTED: integrin-alpha FG-GAP repeat-containing protein 2 [Nanorana parkeri]) HSP 1 Score: 74.3294 bits (181), Expect = 1.849e-10 Identity = 117/510 (22.94%), Postives = 179/510 (35.10%), Query Frame = 0
Query: 60 AMALADLDGDGQQEFMVGSLDGTLAIYKGLAGRVPWAVATGLGMLRVFSCGQLLPDCDIETQSPLSKHCSEKVSGEKGGKAQATAGTRPARPKQLVALTVEGDVHLFDFKNDPSLLTLTSPTKPSYAEKHGGRSSPAQHTDVPVFSAWDTPSLSLQPSHSFTVAPNVTAALILDVDGDGCQELVLGYTDGKLQVLGWRSAWRLTEDAGPDDSRPCSERVPGGAPVQMFEKGVATASASIVSLSSLGADDSSERPECIAVGLEAGTIEVLRCS-----------SGAAGDREPLLTSLVELQIGGGLPLPRFGWSGPLTCCALPKDVDSRARGLAFAVAGLDGRMGVAVVGKEGGGAGEESQAADEGGLGTWKTVWSVQTRHPLYTVAPLFLGTGDEGWGFAACAWSGLTYWVLTKASSAGQAGAEKVRVFDPSKMLM-----PPVRGFLAGAF---GPDNEPCLFYSCADGHIVVFHELEKQLRRLQKGTE----EYEEEVAKAARELRA 546
A+ L D D D E ++G G L +YK + PW GML G + C++ GK +VA++ EG HLFD + + S+WD ++ +++ + N LI D+DGDGC ELVLGYTD ++ W + PD + VP +K + +S++ GAD S E + V VLRC+ GAA RE ++ Q G + + + V ++ GL FA+ LDG + + Q +D + +WSVQ H L+ + L + TG+ ACAW G TY + D ++ ++ V F AG + G N PCL Y + + V+ + L R++ E EE +EL
Sbjct: 22 ALCLGDADNDSLNELILGDTSGKLHVYKHDQSK-PWITRCCTGMLTCVGVGDV---------------CNK-------GK------------NLVVAVSAEGWFHLFDLSS-------------------------------KLDSSWDLMGEEMKANYTQHLPANTKLVLISDIDGDGCYELVLGYTDRVVRAFRW--------ECPPDSDLSYGQLVP-------LKKWLLEGQVDSLSVNP-GADGSPE----LMVSQPGCGFAVLRCTWSDETNLTSEGPGAAEAREVSSRDVILHQTSGRIHNKNVS-THLIGSIKQGPGVGNKEAGL-FALCTLDGTLKLM-------------QGSD-------RLLWSVQVDHQLFALEKLDV-TGNGQEEVVACAWDGQTY------------------IIDHNRTVLRFQVEENVSAFCAGLYACRGGQNSPCLVYVGFNQKVYVYWSV--MLERIESSNVLRVLEENEEFTSILKELHV 402
BLAST of EWM28335.1 vs. NCBI_GenBank
Match: gi|1191881222|ref|XP_020948117.1| (integrin-alpha FG-GAP repeat-containing protein 2 isoform X1 [Sus scrofa]) HSP 1 Score: 68.9366 bits (167), Expect = 1.081e-8 Identity = 128/504 (25.40%), Postives = 173/504 (34.33%), Query Frame = 0
Query: 42 IYLLTRKELYFGPNHAHTAMALADLDGDGQQEFMVGSLDGTLAIYKGLAGRVPWAVATGLGMLRVFSCGQLLPDCDIETQSPLSKHCSEKVSGEKGGKAQATAGTRPARPKQLVALTVEGDVHLFDFKNDPSLLTLTSPTKPSYAEKHGGRSSPAQHTDVPVFSAWDTPSLSLQPSHSFTVAPNVTAALILDVDGDGCQELVLGYTDGKLQVLGWRSAWRLTEDA-------------GPDDSRPCSERVPGGAPVQMFEK-GVATASASIVSLSSLGADDSSERPECIAVGLEAGTIEVLRCSSGAAGDREPLLTSLVELQIGGGLPLPRFGWSGPLTCCALPKDVDSRARGLAFAVAGLDGRMGVAVVGKEGGGAGEESQAADEGGLGTW----KTVWSVQTRHPLYTVAPLFLGTGDEGWGFAACAWSGLTYWVLTKASSAGQAGAEKVRVFDPSKMLMPPVRGFLAGAFGPDNEPCLFYSCADGHIVVFHELEKQLRRLQ 527
+ + R L F + A+ L D+D D E +VG G L +YK R PW + GML G + C++ GK +VA++ EG HL D +P K A H + PVF + N LI D+DGDG ELVLGYTD ++ W TE G DS + P G P M + G A A GA +SE P A VL +SG ++ + ++ G P G SG C L G + A G M V +G G + S G L K +WSVQ H L+ + L + TG+ ACAW G TY + + E +R F L G N PCL Y + I V+ E+ QL R++
Sbjct: 4 VSYVQRVALEFSGSLFPHAICLGDVDNDTLNELVVGDTSGKLLVYKNDDSR-PWLTCSCQGMLTCVGVGDV---------------CNK-------GK------------NLVVAVSAEGWFHLCDL----------TPAKALDASGH--HETLVGEEQRPVFKQ--------------HIPANTKVMLISDIDGDGRCELVLGYTDRVVRAFRWEDLGDGTEHLMGQLVSLKKWMLEGQVDSLSVTPG-PLGVPELMVSQPGCAYAILLCTWNKDPGAPPTSEVPSEGTRETPAARDVVLHQTSGRIHNKNVSTHLVGNIKRGHS---PESGASGLFALCTL--------DGESPASPKCAGWMFV-YLGSAWGLCPQPSLPLPPGTLKLMEQADKLLWSVQVDHQLFALEKLDV-TGNGHEEVVACAWDGQTYIIDHNRTVVRFQVDENIRAFCTG----------LYACKGGHNSPCLVYVTFNQKIYVYWEV--QLERME 420
BLAST of EWM28335.1 vs. NCBI_GenBank
Match: gi|330804797|ref|XP_003290377.1| (hypothetical protein DICPUDRAFT_81115 [Dictyostelium purpureum] >gi|325079503|gb|EGC33100.1| hypothetical protein DICPUDRAFT_81115 [Dictyostelium purpureum]) HSP 1 Score: 68.5514 bits (166), Expect = 2.360e-8 Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 0
Query: 35 TNLQVDEIYLLTRKELYFGPNHAHTAMALADLDGDGQQEFMVGSLDGTLAIYKGLAGRVPWAVATGLGMLRVFSCGQL 112
N + I L R L + N A+ALAD+D DG E +VGSL+G LAI+KG++ + PW +++GLG + SCG L
Sbjct: 2 NNNSIRHISLTDRIVLSWKGNIFRRAIALADVDNDGDNELIVGSLEGNLAIFKGMSEK-PWKISSGLGSISCISCGDL 78
BLAST of EWM28335.1 vs. NCBI_GenBank
Match: gi|761919999|ref|XP_011408907.1| (PREDICTED: integrin-alpha FG-GAP repeat-containing protein 2-like, partial [Amphimedon queenslandica]) HSP 1 Score: 65.855 bits (159), Expect = 3.176e-8 Identity = 59/249 (23.69%), Postives = 88/249 (35.34%), Query Frame = 0
Query: 42 IYLLTRKELYFGPNHAHTAMALADLDGDGQQEFMVGSLDGTLAIYKGLAGRVPWAVATGLGMLRVFSCGQLLPDCDIETQSPLSKHCSEKVSGEKGGKAQATAGTRPARPKQLVALTVEGDVHLFDFKNDPSLLTLTSPTKPSYAEKHGGRSSPAQHTDVPVFSAWDTPSLSLQPSHSFTVAPNVTAALILDVDGDGCQELVLGYTDGKLQVLGWRSAWRLTEDAGPDDSRPCSERVPGGAPVQMFEKG 290
+ + R EL F NH A+ L D+DGDG EF+VG+++G L+++KG PW ATGLG + + G L GK QL+ + G ++F S + G P ++P PN+ +I + D +EL +G+TD + V W + + E R ER G V M G
Sbjct: 6 VSFVDRLELEFTGNHFSHALTLGDVDGDGLNEFIVGNVEGQLSVFKGNTSGKPWRSATGLGSITCVTTGDLF----------------------NTGKV------------QLICINAMGMCYIFSLYR-------------SSKSRTGSSVEPVHTQELP---------------------PNIKVMIIASIAPDNKEELFVGHTDRYIGVYRWTNDFNRLELR----HRLTLERQIGSLSVTMTSDG 182 The following BLAST results are available for this feature:
BLAST of EWM28335.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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