EWM28335.1, cds2352 (CDS) Nannochloropsis gaditana

Overview
NameEWM28335.1
Unique Namecds2352
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:185623..187398 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28335.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100109g4.6603.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:185623..187398 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
Homology
BLAST of EWM28335.1 vs. NCBI_GenBank
Match: gi|585110684|gb|EWM28335.1| (hypothetical protein Naga_100109g4 [Nannochloropsis gaditana])

HSP 1 Score: 1196.03 bits (3093), Expect = 0.000e+0
Identity = 591/591 (100.00%), Postives = 591/591 (100.00%), Query Frame = 0
Query:    1 MEECAHDTEMLNKAEASGTSPSPSSLATGFFPGSTNLQVDEIYLLTRKELYFGPNHAHTAMALADLDGDGQQEFMVGSLDGTLAIYKGLAGRVPWAVATGLGMLRVFSCGQLLPDCDIETQSPLSKHCSEKVSGEKGGKAQATAGTRPARPKQLVALTVEGDVHLFDFKNDPSLLTLTSPTKPSYAEKHGGRSSPAQHTDVPVFSAWDTPSLSLQPSHSFTVAPNVTAALILDVDGDGCQELVLGYTDGKLQVLGWRSAWRLTEDAGPDDSRPCSERVPGGAPVQMFEKGVATASASIVSLSSLGADDSSERPECIAVGLEAGTIEVLRCSSGAAGDREPLLTSLVELQIGGGLPLPRFGWSGPLTCCALPKDVDSRARGLAFAVAGLDGRMGVAVVGKEGGGAGEESQAADEGGLGTWKTVWSVQTRHPLYTVAPLFLGTGDEGWGFAACAWSGLTYWVLTKASSAGQAGAEKVRVFDPSKMLMPPVRGFLAGAFGPDNEPCLFYSCADGHIVVFHELEKQLRRLQKGTEEYEEEVAKAARELRAPETQELVDAWVKVHLTQAGETAGGVDEGETPQAEVLEPEEGKGGP 591
            MEECAHDTEMLNKAEASGTSPSPSSLATGFFPGSTNLQVDEIYLLTRKELYFGPNHAHTAMALADLDGDGQQEFMVGSLDGTLAIYKGLAGRVPWAVATGLGMLRVFSCGQLLPDCDIETQSPLSKHCSEKVSGEKGGKAQATAGTRPARPKQLVALTVEGDVHLFDFKNDPSLLTLTSPTKPSYAEKHGGRSSPAQHTDVPVFSAWDTPSLSLQPSHSFTVAPNVTAALILDVDGDGCQELVLGYTDGKLQVLGWRSAWRLTEDAGPDDSRPCSERVPGGAPVQMFEKGVATASASIVSLSSLGADDSSERPECIAVGLEAGTIEVLRCSSGAAGDREPLLTSLVELQIGGGLPLPRFGWSGPLTCCALPKDVDSRARGLAFAVAGLDGRMGVAVVGKEGGGAGEESQAADEGGLGTWKTVWSVQTRHPLYTVAPLFLGTGDEGWGFAACAWSGLTYWVLTKASSAGQAGAEKVRVFDPSKMLMPPVRGFLAGAFGPDNEPCLFYSCADGHIVVFHELEKQLRRLQKGTEEYEEEVAKAARELRAPETQELVDAWVKVHLTQAGETAGGVDEGETPQAEVLEPEEGKGGP
Sbjct:    1 MEECAHDTEMLNKAEASGTSPSPSSLATGFFPGSTNLQVDEIYLLTRKELYFGPNHAHTAMALADLDGDGQQEFMVGSLDGTLAIYKGLAGRVPWAVATGLGMLRVFSCGQLLPDCDIETQSPLSKHCSEKVSGEKGGKAQATAGTRPARPKQLVALTVEGDVHLFDFKNDPSLLTLTSPTKPSYAEKHGGRSSPAQHTDVPVFSAWDTPSLSLQPSHSFTVAPNVTAALILDVDGDGCQELVLGYTDGKLQVLGWRSAWRLTEDAGPDDSRPCSERVPGGAPVQMFEKGVATASASIVSLSSLGADDSSERPECIAVGLEAGTIEVLRCSSGAAGDREPLLTSLVELQIGGGLPLPRFGWSGPLTCCALPKDVDSRARGLAFAVAGLDGRMGVAVVGKEGGGAGEESQAADEGGLGTWKTVWSVQTRHPLYTVAPLFLGTGDEGWGFAACAWSGLTYWVLTKASSAGQAGAEKVRVFDPSKMLMPPVRGFLAGAFGPDNEPCLFYSCADGHIVVFHELEKQLRRLQKGTEEYEEEVAKAARELRAPETQELVDAWVKVHLTQAGETAGGVDEGETPQAEVLEPEEGKGGP 591          
BLAST of EWM28335.1 vs. NCBI_GenBank
Match: gi|1133466104|ref|XP_003387535.2| (PREDICTED: integrin-alpha FG-GAP repeat-containing protein 2-like [Amphimedon queenslandica])

HSP 1 Score: 81.2629 bits (199), Expect = 1.500e-12
Identity = 112/529 (21.17%), Postives = 183/529 (34.59%), Query Frame = 0
Query:   42 IYLLTRKELYFGPNHAHTAMALADLDGDGQQEFMVGSLDGTLAIYKGLAGRVPWAVATGLGMLRVFSCGQLLPDCDIETQSPLSKHCSEKVSGEKGGKAQATAGTRPARPKQLVALTVEGDVHLFDFKNDPSLLTLTSPTKPSYAEKHGGRSSPAQHTDVPVFSAWDTPSLSLQPSHSFTVAPNVTAALILDVDGDGCQELVLGYTDGKLQVLGWRSAWRLTEDAGPDDSRPCSERVPGGAPVQMFEKG-----VATASASIVSLSSL-GADDSSERPECIAVGLEAGTIEVLRCSSGAAGDREPLLTSLVE--------------LQIGGGLPLPRFGWSGPLTCCALPKD-----------VDSRARGLAFAVAGLDGRMGVAVVGKEGGGAGEESQAADE-------------GG----LGTWKTVWSVQTRHPLYTVAPLFLGTGDEGWGFAACAWSGLTYWVLTKASSAGQAGAEKVRVFDPSKMLMPPVRGFLAGAFG---PDNEPCLFYSCADGHIVVFHEL 519
            +  + R EL F  NH   A+ L D+DGDG  EF++G+++G L+++KG     PW  ATGLG +   + G L                         GK             QL+ +   G  ++F                 S   + G    P    ++P                     PN+   +I  +  D  +EL +G+TD  + V  W + +   E       R   ER  G   V M   G     V+    + V L  +   +D        ++  +  T ++   S    GD+E  +   +E              L+      + R   +G +    + ++           + SR R     + G+  R   + V +  G    +S   DE             GG    +   K +W  Q  H L+ ++ L + T D       C+W+G+TY +L  + +  +   E              V  F AG FG     N+P L YS     I V+H +
Sbjct:    6 VSFVDRLELEFTGNHFSHALTLGDVDGDGLNEFIIGNVEGQLSVFKGNTSGKPWRSATGLGSITCVTTGDLF----------------------NTGKV------------QLICINAMGMCYIFSLYR-------------SSKSRTGSAVEPVHTQELP---------------------PNIKVMIIASIAPDNKEELFVGHTDRYIGVYRWTNDFNRLELR----HRLTLERQIGSLSVTMTSDGRSQLLVSQVGGTYVPLEYVENVEDLFPSISSSSMLSDNSTKDIQDSSDTGRGDKENYINMSLENEPEEKRRASDSVSLKQNKTPKVSRHSSTGDVLETKIRRNSSRSSFKGSESLLSRYRLHVNGIVGIAQRNSPSSVTEAVGDLTSKSDLFDEEQKHSNIVALCTLGGCIRFMKDEKKIWEHQVDHNLFAISKLDV-TNDGQDEIIVCSWNGVTY-ILDHSRNVVRYKFE------------DNVCAFCAGMFGFTSEHNKPVLIYSTFFNKIYVYHNI 448          
BLAST of EWM28335.1 vs. NCBI_GenBank
Match: gi|1072246397|ref|XP_018407899.1| (PREDICTED: integrin-alpha FG-GAP repeat-containing protein 2 [Nanorana parkeri])

HSP 1 Score: 74.3294 bits (181), Expect = 1.849e-10
Identity = 117/510 (22.94%), Postives = 179/510 (35.10%), Query Frame = 0
Query:   60 AMALADLDGDGQQEFMVGSLDGTLAIYKGLAGRVPWAVATGLGMLRVFSCGQLLPDCDIETQSPLSKHCSEKVSGEKGGKAQATAGTRPARPKQLVALTVEGDVHLFDFKNDPSLLTLTSPTKPSYAEKHGGRSSPAQHTDVPVFSAWDTPSLSLQPSHSFTVAPNVTAALILDVDGDGCQELVLGYTDGKLQVLGWRSAWRLTEDAGPDDSRPCSERVPGGAPVQMFEKGVATASASIVSLSSLGADDSSERPECIAVGLEAGTIEVLRCS-----------SGAAGDREPLLTSLVELQIGGGLPLPRFGWSGPLTCCALPKDVDSRARGLAFAVAGLDGRMGVAVVGKEGGGAGEESQAADEGGLGTWKTVWSVQTRHPLYTVAPLFLGTGDEGWGFAACAWSGLTYWVLTKASSAGQAGAEKVRVFDPSKMLM-----PPVRGFLAGAF---GPDNEPCLFYSCADGHIVVFHELEKQLRRLQKGTE----EYEEEVAKAARELRA 546
            A+ L D D D   E ++G   G L +YK    + PW      GML     G +               C++       GK              +VA++ EG  HLFD  +                                + S+WD     ++ +++  +  N    LI D+DGDGC ELVLGYTD  ++   W        +  PD      + VP        +K +       +S++  GAD S E    + V        VLRC+            GAA  RE     ++  Q  G +       +  +        V ++  GL FA+  LDG + +              Q +D       + +WSVQ  H L+ +  L + TG+      ACAW G TY                  + D ++ ++       V  F AG +   G  N PCL Y   +  + V+  +   L R++        E  EE     +EL  
Sbjct:   22 ALCLGDADNDSLNELILGDTSGKLHVYKHDQSK-PWITRCCTGMLTCVGVGDV---------------CNK-------GK------------NLVVAVSAEGWFHLFDLSS-------------------------------KLDSSWDLMGEEMKANYTQHLPANTKLVLISDIDGDGCYELVLGYTDRVVRAFRW--------ECPPDSDLSYGQLVP-------LKKWLLEGQVDSLSVNP-GADGSPE----LMVSQPGCGFAVLRCTWSDETNLTSEGPGAAEAREVSSRDVILHQTSGRIHNKNVS-THLIGSIKQGPGVGNKEAGL-FALCTLDGTLKLM-------------QGSD-------RLLWSVQVDHQLFALEKLDV-TGNGQEEVVACAWDGQTY------------------IIDHNRTVLRFQVEENVSAFCAGLYACRGGQNSPCLVYVGFNQKVYVYWSV--MLERIESSNVLRVLEENEEFTSILKELHV 402          
BLAST of EWM28335.1 vs. NCBI_GenBank
Match: gi|1191881222|ref|XP_020948117.1| (integrin-alpha FG-GAP repeat-containing protein 2 isoform X1 [Sus scrofa])

HSP 1 Score: 68.9366 bits (167), Expect = 1.081e-8
Identity = 128/504 (25.40%), Postives = 173/504 (34.33%), Query Frame = 0
Query:   42 IYLLTRKELYFGPNHAHTAMALADLDGDGQQEFMVGSLDGTLAIYKGLAGRVPWAVATGLGMLRVFSCGQLLPDCDIETQSPLSKHCSEKVSGEKGGKAQATAGTRPARPKQLVALTVEGDVHLFDFKNDPSLLTLTSPTKPSYAEKHGGRSSPAQHTDVPVFSAWDTPSLSLQPSHSFTVAPNVTAALILDVDGDGCQELVLGYTDGKLQVLGWRSAWRLTEDA-------------GPDDSRPCSERVPGGAPVQMFEK-GVATASASIVSLSSLGADDSSERPECIAVGLEAGTIEVLRCSSGAAGDREPLLTSLVELQIGGGLPLPRFGWSGPLTCCALPKDVDSRARGLAFAVAGLDGRMGVAVVGKEGGGAGEESQAADEGGLGTW----KTVWSVQTRHPLYTVAPLFLGTGDEGWGFAACAWSGLTYWVLTKASSAGQAGAEKVRVFDPSKMLMPPVRGFLAGAFGPDNEPCLFYSCADGHIVVFHELEKQLRRLQ 527
            +  + R  L F  +    A+ L D+D D   E +VG   G L +YK    R PW   +  GML     G +               C++       GK              +VA++ EG  HL D           +P K   A  H    +       PVF                 +  N    LI D+DGDG  ELVLGYTD  ++   W      TE               G  DS   +   P G P  M  + G A A          GA  +SE P        A    VL  +SG   ++      +  ++ G     P  G SG    C L         G + A     G M V  +G   G   + S     G L       K +WSVQ  H L+ +  L + TG+      ACAW G TY +    +       E +R F             L    G  N PCL Y   +  I V+ E+  QL R++
Sbjct:    4 VSYVQRVALEFSGSLFPHAICLGDVDNDTLNELVVGDTSGKLLVYKNDDSR-PWLTCSCQGMLTCVGVGDV---------------CNK-------GK------------NLVVAVSAEGWFHLCDL----------TPAKALDASGH--HETLVGEEQRPVFKQ--------------HIPANTKVMLISDIDGDGRCELVLGYTDRVVRAFRWEDLGDGTEHLMGQLVSLKKWMLEGQVDSLSVTPG-PLGVPELMVSQPGCAYAILLCTWNKDPGAPPTSEVPSEGTRETPAARDVVLHQTSGRIHNKNVSTHLVGNIKRGHS---PESGASGLFALCTL--------DGESPASPKCAGWMFV-YLGSAWGLCPQPSLPLPPGTLKLMEQADKLLWSVQVDHQLFALEKLDV-TGNGHEEVVACAWDGQTYIIDHNRTVVRFQVDENIRAFCTG----------LYACKGGHNSPCLVYVTFNQKIYVYWEV--QLERME 420          
BLAST of EWM28335.1 vs. NCBI_GenBank
Match: gi|330804797|ref|XP_003290377.1| (hypothetical protein DICPUDRAFT_81115 [Dictyostelium purpureum] >gi|325079503|gb|EGC33100.1| hypothetical protein DICPUDRAFT_81115 [Dictyostelium purpureum])

HSP 1 Score: 68.5514 bits (166), Expect = 2.360e-8
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 0
Query:   35 TNLQVDEIYLLTRKELYFGPNHAHTAMALADLDGDGQQEFMVGSLDGTLAIYKGLAGRVPWAVATGLGMLRVFSCGQL 112
             N  +  I L  R  L +  N    A+ALAD+D DG  E +VGSL+G LAI+KG++ + PW +++GLG +   SCG L
Sbjct:    2 NNNSIRHISLTDRIVLSWKGNIFRRAIALADVDNDGDNELIVGSLEGNLAIFKGMSEK-PWKISSGLGSISCISCGDL 78          
BLAST of EWM28335.1 vs. NCBI_GenBank
Match: gi|761919999|ref|XP_011408907.1| (PREDICTED: integrin-alpha FG-GAP repeat-containing protein 2-like, partial [Amphimedon queenslandica])

HSP 1 Score: 65.855 bits (159), Expect = 3.176e-8
Identity = 59/249 (23.69%), Postives = 88/249 (35.34%), Query Frame = 0
Query:   42 IYLLTRKELYFGPNHAHTAMALADLDGDGQQEFMVGSLDGTLAIYKGLAGRVPWAVATGLGMLRVFSCGQLLPDCDIETQSPLSKHCSEKVSGEKGGKAQATAGTRPARPKQLVALTVEGDVHLFDFKNDPSLLTLTSPTKPSYAEKHGGRSSPAQHTDVPVFSAWDTPSLSLQPSHSFTVAPNVTAALILDVDGDGCQELVLGYTDGKLQVLGWRSAWRLTEDAGPDDSRPCSERVPGGAPVQMFEKG 290
            +  + R EL F  NH   A+ L D+DGDG  EF+VG+++G L+++KG     PW  ATGLG +   + G L                         GK             QL+ +   G  ++F                 S   + G    P    ++P                     PN+   +I  +  D  +EL +G+TD  + V  W + +   E       R   ER  G   V M   G
Sbjct:    6 VSFVDRLELEFTGNHFSHALTLGDVDGDGLNEFIVGNVEGQLSVFKGNTSGKPWRSATGLGSITCVTTGDLF----------------------NTGKV------------QLICINAMGMCYIFSLYR-------------SSKSRTGSSVEPVHTQELP---------------------PNIKVMIIASIAPDNKEELFVGHTDRYIGVYRWTNDFNRLELR----HRLTLERQIGSLSVTMTSDG 182          
The following BLAST results are available for this feature:
BLAST of EWM28335.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585110684|gb|EWM28335.1|0.000e+0100.00hypothetical protein Naga_100109g4 [Nannochloropsi... [more]
gi|1133466104|ref|XP_003387535.2|1.500e-1221.17PREDICTED: integrin-alpha FG-GAP repeat-containing... [more]
gi|1072246397|ref|XP_018407899.1|1.849e-1022.94PREDICTED: integrin-alpha FG-GAP repeat-containing... [more]
gi|1191881222|ref|XP_020948117.1|1.081e-825.40integrin-alpha FG-GAP repeat-containing protein 2 ... [more]
gi|330804797|ref|XP_003290377.1|2.360e-843.59hypothetical protein DICPUDRAFT_81115 [Dictyosteli... [more]
gi|761919999|ref|XP_011408907.1|3.176e-823.69PREDICTED: integrin-alpha FG-GAP repeat-containing... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2360rna2360Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications