rna2358, rna2358 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2358
Unique Name	rna2358
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1493
Alignment location	CM002459.1:182893..185577 +

Link to JBrowse

Properties


Property Name	Value
Product	homogentisate -dioxygenase
Orig transcript id	gnl\|cribi\|Naga_100109g5.6599.mrna
Orig protein id	gnl\|cribi\|Naga_100109g5.6599
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:182893..185577 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100109g5	gene2253	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2358	rna2358-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28331.1	cds2350	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:182893..185577+
coding sequence from alignment at CM002459.1:182893..185577+

mRNA sequence

>rna2358 ID=rna2358|Name=rna2358|organism=Nannochloropsis gaditana|type=mRNA|length=1493bp
GACGGCTCAACTTAATCCCTCGTCAATTAACATTTCGGTAGACGTACAGG
GCAAGAACGATGGCGTTCATGTTTCTATCTTTACTGATTGATATTCTAAG
AGATTTAATCCACTTTCCCTGTCATATTTGATGCCTTGTAAAGCGGGTTC
AACCTGCACGCGAGGACAGTATCCAGAGCGTCTCTCCGTCCCCCTGGTAC
TCCCCTTTTCTTTTAACCAAAGCCTTTTCAAATTTCCAATTCCCAGTCAT
ACTTTATTTAGACCTTAATTGCTGTGAAGTGGGAGTCTGCTTTTCAAGCT
CCACAGCCGGGCGCTAAATTTCAAGAAAAGAAGCTTGCGTTCAAGAAGAT
CATGAGGCTGGCTGTAGGGCTCCTGTCGGTGGTTGTCGCCATGGCCAGCG
TTCTTAGCAGCGCCCATCCAATTTGTTGTACGGTGAATAAAGTGAGAAAA
TTACCTAGCACACCGGCTGTAACGCTCGCATCCTTGCAAGGGGGGCGAAT
CTTGAGACCAGACAGAAGGAGCCATCGACACATGCCATGGTCCGCGCCGT
ACGCGCCTCGTGGCATGCTGAGCAGAAGGGCCATGGCCAGTATTCCGAGC
CCTTTGGGGCTTCTCAAAGCATTTGGTAAAGCCTACAGCAACTGGATGAT
GGAGCAACCGATCCGTGCGAATCTGATTTCCGGGATATTGATGGTGGCAG
TGGGCGACGGGATCAGTCAAGCGATCGAAGTGGATGCGAAGACGGGCCAA
AAGAAGTGCACGTCTTGGCGGGACCTCTCCTTGCGCCGTTTAGCTAATGC
AGGATTTGCAGGTGCGGTATTCAACGGTGTTTTACTGCCGCAATGGTACC
TATTGCTGCATAAACTCTCTCCAGGAGCGGAGACGCCAAAGACGATCGCG
GCGAAGATTCTCGGCAATTGCGTGGCGTGGGGCTGTGTGGGGAACGCTGC
TATCATGGCCATGCGAAGAGTGCTCGACGGGGAGAGCTGGCATGACGCTG
AACAGGCCGTGCGGAGAGATCTCTGGGGAGTGATGATGAATGACTACAAA
ATATGGCCTTTATACGACGTGCTCTGCTTCACCTGCATCCCCCGGCATTT
GCACGGGCTGTCCACAGGCACGTTGGGGATCGTGTGGGCGACCTACTTGT
CCTACGTGACCCATACGGAGGGGCACTGATGCCGTAGGGTGGGGGCAGCG
AGAATGCAGGCCCCTGGGGGTTCATGGCAAGGGAGGGGGCGGAGAGTGTC
TGGCTCCGAGGGAGAGGTAAGGCGGCACCCGCCTCCGTGAAGGGGGCCAG
GACAAGAGGAAGACCAGCCTGTGGTCGACACGACCTTCCATCAAGACAGG
GCGGATGGCTTTTCAAATGTTCAAAATATGTGGAGTCTTCCTGCAGGCAT
GCTAAAAGAGGGTCAGAGCATGTCTGTCATCTGCAGCAACACACGGTGGA
ACAGTTTGACGAAGAAACATGACCACCACATCGTAGTAATCCA

protein sequence of rna2358

>rna2358-protein ID=rna2358-protein|Name=rna2358|organism=Nannochloropsis gaditana|type=polypeptide|length=360bp
MTSSSSSLMEETTKKVPLSSEIKRTRPALQYQSGFGNHFSTEAIPNALPE
GQNTPQTCPYGLYAEQLSGTAFTVPREHNQRSWLYRIRPSVVQSRFIPVA
SSLSRLGLLNKPEVTTPAMLRWRPLPLPMPASDPNAPTTAGSGVDFVDGL
VCMMGAGDPGSKQGLNVFMYAADTSMVDVAFQNSDGDFLVVPQMGTLHIR
TEMGILEVEPREIVVLPRGIKFQIDVDAPSRGYVLEVFEGHFQLPQLGPL
GANGLANPRDFKYPVAAFQDLERPFRLFNKFGGELFEATLPASPFNVVAW
HGNYAPFKYNLDDFCCVGSVTYDHLVGRQEDLGGMGLIGFVFLLGIVITP
FGLFPRHPSI

mRNA from alignment at CM002459.1:182893..185577+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2358 ID=rna2358|Name=rna2358|organism=Nannochloropsis gaditana|type=mRNA|length=2685bp|location=Sequence derived from alignment at CM002459.1:182893..185577+ (Nannochloropsis gaditana)
GAATTACATCAGTGCCTCTATTCACGCGTGCTCAGTAGAAGTCTTTCatc
tttttaaaaaaaattgAATAGCACGTTTGTTATCATTTGAAGCGTTGCCG
TTGCGGAGGCCGACGCCTTTCAAGGTATTGGGAGTAGCAGCAGCTTCAAG
GGAACAGGATCACAGAACGATgacatcctcttcctcctctttgatgGAAG
AAACCACCAAGAAAGTTCCCTTGTCGTCCGAGATAAAGCGCACGCGTCCA
GCATTGCAGTATCAATCAGGCTTTGGCAACCATTTCAGCACCGAGGCAAT
ACCAAATGCCCTACCTGAAGGCCAAAACACCCCGCAAACCTGCCCGTACG
GTACGTTCCGGAAGCCATGCAGCTTCCATGCTCATCATATTTTCCCTTTA
GCACCTCGGTTGTCCCCGCGGCATGCCCAGGGATTTCTGCTCTGTCAGGA
CTTCGGCATGTTtgtctcttctctctctcttggcTTGATGCTTTCCCCGT
CTCGGACCTTTGCGCACAGGTCTCTACGCCGAGCAATTATCTGGCACGGC
ATTCACCGTCCCCCGCGAGCATAACCAACGCTCCTGGTTGTATCGCATTC
GGCCGTCCGTGGTCCAATCCCGTTTCATTCctgtggcttcctccctctct
cgccttgGCCTGCTCAACAAGCCGGAGGTCACCACGCCGGCCATGCTGCG
ATGGCGCCCGTTGCCCCTGCCTATGCCTGCATCGGATCCAAATGCACCCA
CTACGGCCGGTTCTGGGGTTGACTTTGTAGATGGACTGGTCTGTATGATG
GGGGCTGGCGACCCGGGCAGCAAACAGGGCCTGAATGTCTTCATGTACGC
AGCCGATACCTCCATGGTCGACGTTGCCTTCCAGAATTCGGACGGAGACT
TCTTGGTGGTGCCTCAGATGGGGTGAGTATCAAGttgggtggaagggaag
gagtgcaGCGGGGCGGTGAGACGATCAGAGCGTTGATAATGGAGGGTAGG
TGAGAGCCCTGCTTGCCCTTCACACTCACACGCCCGCGCCGTCGTCGCTC
CCAGGACGTTACACATCCGCACCGAAATGGGCATTTTGGAGGTAGAACCA
AGGGAGATCGTGGTCTTGCCGCGTGGTATCAAGTTTCAGATCGACGTGGA
CGCCCCCTCGCGGGGGTACGTGCTGGAAGTTTTCGAGGGCCACTTCCAGG
tcaggagggcgcggggctCCGGAGGGTGCCaacggggaaagggggcaaCG
ACGTCCTTCGGCACGTGCACAGGCGGGGCGTTTGGAGATCGAGAGACGTG
AGCCATGGCACTGCGCGTGCGGTGCTCGCGACggtcttctcctgcccctg
attttggcgcgaagaGAATTGCTGGTCCGCAATGTTGCCCCAGGTCGAGA
GCTCACCCCCCTGCCTATCCCCCTTTACCGCACAGCTCCCACAGCTCGGT
CCCCTGGGTGCAAACGGTTTGGCCAACCCTCGCGACTTTAAGTACCCCGT
TGCCGCCTTCCAAGACCTGGAGAGGCCTTTCCGGCTCTTCAACAAATTTG
GGGGAGAGCTTTTCGAGGCAACcctgcctgcttcccctttcaACGTGGTG
GCATGGCATGGCAACTATGCTCCTTTTAAATACAACCTGGACGATTTCTG
CTGCGTGGGCTCGGTGACCTATGATCATTTGgtagggaggcaggaagacc
tgggagggatggggttGATTGGCTTCGTATTTCTCCTTGGCATCGTCATC
ACACCTTTTGGTCTCTTTCCGAGGCATCCTTCAATTTAATGCGCGTTCCA
TTGCCGACTCTAGCATTTCTCTATCCATTTACTTCCTATCCGATCGTCCT
CCGTCGAGGCCTttgcatcccttccttcttggcGTACCTCTCTCGCACTC
ATCCTTCACCCATCCAATGCTATCATAATATCACCATACTTTACCTTCAT
ACCTCACCACCGCACATCGCTGACCTTTCAGACttgttcccctccttcag
gacCCTTCCATCTTCACCGTCTTGACCTGCCCGTCCGCCGTGCCCGGTGT
GGCCGTCGCAGACTTTGtggtctttcccccccgatGGATGGTGATGGAGC
ATACCTTCCGGCCCCCCTACTATCATCGAAACGTGATGAGCGAGTACATG
GGAATGATCTACGGAAAGTACGACGCCAAGGAAGGCTTCCTGCCGGGGGG
CGCATCCCTCCACTCCTGCATGTCCCCCCATGGGCCCGACTTGGCTACTT
TCGAGAAGGCAACGACCGAGGCGCTGGCGCCCGTGAAATttgagggaggg
ctggcCTTCATGTTTGAGACATGCTACGTCTTGAAATTGACCGAGTGGGC
CGTGAACGCCCCTcatttggaggaggattaCGAAGAAAGGTGCTGGGCAC
GGTTGCCTAAAAAGTTTGTAGCTCCTCAGGAAGATGGAAGCCAGAAGTAA
AAGTAATGTGGATAATAGGTGGTGTGGAGACACGTGGcgtaggggagggg
aggttccTCCGCGATGCGCAGTGCAATCAGGTGCCGAAAAGGGTGGAAAG
CTAGAGAGTTAtcaaaagagaaagaagggtaCGCTTTGGCTCCTTCAGAG
GGCGATGTAGACTGTGTTCGGAATTACAAATACAAGGGATGTAAAAAAGA
GCCGAAAATGACCGAGCAACATTTTCCCGGAAAAA

Coding sequence (CDS) from alignment at CM002459.1:182893..185577+

>rna2358 ID=rna2358|Name=rna2358|organism=Nannochloropsis gaditana|type=CDS|length=4332bp|location=Sequence derived from alignment at CM002459.1:182893..185577+ (Nannochloropsis gaditana)
ATgacatcctcttcctcctctttgatgGAAGAAACCACCAAGAAAGTTCC
CTTGTCGTCCGAGATAAAGCGCACGCGTCCAGCATTGCAGTATCAATCAG
GCTTTGGCAACCATTTCAGCACCGAGGCAATACCAAATGCCCTACCTGAA
GGCCAAAACACCCCGCAAACCTGCCCGTACGGTCTCTACGCCGAGCAATT
ATCTGGCACGGCATTCACCGTCCCCCGCGAGCATAACCAACGCTCCTGGT
TGTATCGCATTCGGCCGTCCGTGGTCCAATCCCGTTTCATTCctgtggct
tcctccctctctcgccttgGCCTGCTCAACAAGCCGGAGGTCACCACGCC
GGCCATGCTGCGATGGCGCCCGTTGCCCCTGCCTATGCCTGCATCGGATC
CAAATGCACCCACTACGGCCGGTTCTGGGGTTGACTTTGTAGATGGACTG
GTCTGTATGATGGGGGCTGGCGACCCGGGCAGCAAACAGGGCCTGAATGT
CTTCATGTACGCAGCCGATACCTCCATGGTCGACGTTGCCTTCCAGAATT
CGGACGGAGACTTCTTGGTGGTGCCTCAGATGGGGACGTTACACATCCGC
ACCGAAATGGGCATTTTGGAGGTAGAACCAAGGGAGATCGTGGTCTTGCC
GCGTGGTATCAAGTTTCAGATCGACGTGGACGCCCCCTCGCGGGGGTACG
TGCTGGAAGTTTTCGAGGGCCACTTCCAGCTCCCACAGCTCGGTCCCCTG
GGTGCAAACGGTTTGGCCAACCCTCGCGACTTTAAGTACCCCGTTGCCGC
CTTCCAAGACCTGGAGAGGCCTTTCCGGCTCTTCAACAAATTTGGGGGAG
AGCTTTTCGAGGCAACcctgcctgcttcccctttcaACGTGGTGGCATGG
CATGGCAACTATGCTCCTTTTAAATACAACCTGGACGATTTCTGCTGCGT
GGGCTCGGTGACCTATGATCATTTGgtagggaggcaggaagacctgggag
ggatggggttGATTGGCTTCGTATTTCTCCTTGGCATCGTCATCACACCT
TTTGGTCTCTTTCCGAGGCATCCTTCAATTTAAATgacatcctcttcctc
ctctttgatgGAAGAAACCACCAAGAAAGTTCCCTTGTCGTCCGAGATAA
AGCGCACGCGTCCAGCATTGCAGTATCAATCAGGCTTTGGCAACCATTTC
AGCACCGAGGCAATACCAAATGCCCTACCTGAAGGCCAAAACACCCCGCA
AACCTGCCCGTACGGTCTCTACGCCGAGCAATTATCTGGCACGGCATTCA
CCGTCCCCCGCGAGCATAACCAACGCTCCTGGTTGTATCGCATTCGGCCG
TCCGTGGTCCAATCCCGTTTCATTCctgtggcttcctccctctctcgcct
tgGCCTGCTCAACAAGCCGGAGGTCACCACGCCGGCCATGCTGCGATGGC
GCCCGTTGCCCCTGCCTATGCCTGCATCGGATCCAAATGCACCCACTACG
GCCGGTTCTGGGGTTGACTTTGTAGATGGACTGGTCTGTATGATGGGGGC
TGGCGACCCGGGCAGCAAACAGGGCCTGAATGTCTTCATGTACGCAGCCG
ATACCTCCATGGTCGACGTTGCCTTCCAGAATTCGGACGGAGACTTCTTG
GTGGTGCCTCAGATGGGGACGTTACACATCCGCACCGAAATGGGCATTTT
GGAGGTAGAACCAAGGGAGATCGTGGTCTTGCCGCGTGGTATCAAGTTTC
AGATCGACGTGGACGCCCCCTCGCGGGGGTACGTGCTGGAAGTTTTCGAG
GGCCACTTCCAGCTCCCACAGCTCGGTCCCCTGGGTGCAAACGGTTTGGC
CAACCCTCGCGACTTTAAGTACCCCGTTGCCGCCTTCCAAGACCTGGAGA
GGCCTTTCCGGCTCTTCAACAAATTTGGGGGAGAGCTTTTCGAGGCAACc
ctgcctgcttcccctttcaACGTGGTGGCATGGCATGGCAACTATGCTCC
TTTTAAATACAACCTGGACGATTTCTGCTGCGTGGGCTCGGTGACCTATG
ATCATTTGgtagggaggcaggaagacctgggagggatggggttGATTGGC
TTCGTATTTCTCCTTGGCATCGTCATCACACCTTTTGGTCTCTTTCCGAG
GCATCCTTCAATTTAAATgacatcctcttcctcctctttgatgGAAGAAA
CCACCAAGAAAGTTCCCTTGTCGTCCGAGATAAAGCGCACGCGTCCAGCA
TTGCAGTATCAATCAGGCTTTGGCAACCATTTCAGCACCGAGGCAATACC
AAATGCCCTACCTGAAGGCCAAAACACCCCGCAAACCTGCCCGTACGGTC
TCTACGCCGAGCAATTATCTGGCACGGCATTCACCGTCCCCCGCGAGCAT
AACCAACGCTCCTGGTTGTATCGCATTCGGCCGTCCGTGGTCCAATCCCG
TTTCATTCctgtggcttcctccctctctcgccttgGCCTGCTCAACAAGC
CGGAGGTCACCACGCCGGCCATGCTGCGATGGCGCCCGTTGCCCCTGCCT
ATGCCTGCATCGGATCCAAATGCACCCACTACGGCCGGTTCTGGGGTTGA
CTTTGTAGATGGACTGGTCTGTATGATGGGGGCTGGCGACCCGGGCAGCA
AACAGGGCCTGAATGTCTTCATGTACGCAGCCGATACCTCCATGGTCGAC
GTTGCCTTCCAGAATTCGGACGGAGACTTCTTGGTGGTGCCTCAGATGGG
GACGTTACACATCCGCACCGAAATGGGCATTTTGGAGGTAGAACCAAGGG
AGATCGTGGTCTTGCCGCGTGGTATCAAGTTTCAGATCGACGTGGACGCC
CCCTCGCGGGGGTACGTGCTGGAAGTTTTCGAGGGCCACTTCCAGCTCCC
ACAGCTCGGTCCCCTGGGTGCAAACGGTTTGGCCAACCCTCGCGACTTTA
AGTACCCCGTTGCCGCCTTCCAAGACCTGGAGAGGCCTTTCCGGCTCTTC
AACAAATTTGGGGGAGAGCTTTTCGAGGCAACcctgcctgcttccccttt
caACGTGGTGGCATGGCATGGCAACTATGCTCCTTTTAAATACAACCTGG
ACGATTTCTGCTGCGTGGGCTCGGTGACCTATGATCATTTGgtagggagg
caggaagacctgggagggatggggttGATTGGCTTCGTATTTCTCCTTGG
CATCGTCATCACACCTTTTGGTCTCTTTCCGAGGCATCCTTCAATTTAAA
TgacatcctcttcctcctctttgatgGAAGAAACCACCAAGAAAGTTCCC
TTGTCGTCCGAGATAAAGCGCACGCGTCCAGCATTGCAGTATCAATCAGG
CTTTGGCAACCATTTCAGCACCGAGGCAATACCAAATGCCCTACCTGAAG
GCCAAAACACCCCGCAAACCTGCCCGTACGGTCTCTACGCCGAGCAATTA
TCTGGCACGGCATTCACCGTCCCCCGCGAGCATAACCAACGCTCCTGGTT
GTATCGCATTCGGCCGTCCGTGGTCCAATCCCGTTTCATTCctgtggctt
cctccctctctcgccttgGCCTGCTCAACAAGCCGGAGGTCACCACGCCG
GCCATGCTGCGATGGCGCCCGTTGCCCCTGCCTATGCCTGCATCGGATCC
AAATGCACCCACTACGGCCGGTTCTGGGGTTGACTTTGTAGATGGACTGG
TCTGTATGATGGGGGCTGGCGACCCGGGCAGCAAACAGGGCCTGAATGTC
TTCATGTACGCAGCCGATACCTCCATGGTCGACGTTGCCTTCCAGAATTC
GGACGGAGACTTCTTGGTGGTGCCTCAGATGGGGACGTTACACATCCGCA
CCGAAATGGGCATTTTGGAGGTAGAACCAAGGGAGATCGTGGTCTTGCCG
CGTGGTATCAAGTTTCAGATCGACGTGGACGCCCCCTCGCGGGGGTACGT
GCTGGAAGTTTTCGAGGGCCACTTCCAGCTCCCACAGCTCGGTCCCCTGG
GTGCAAACGGTTTGGCCAACCCTCGCGACTTTAAGTACCCCGTTGCCGCC
TTCCAAGACCTGGAGAGGCCTTTCCGGCTCTTCAACAAATTTGGGGGAGA
GCTTTTCGAGGCAACcctgcctgcttcccctttcaACGTGGTGGCATGGC
ATGGCAACTATGCTCCTTTTAAATACAACCTGGACGATTTCTGCTGCGTG
GGCTCGGTGACCTATGATCATTTGgtagggaggcaggaagacctgggagg
gatggggttGATTGGCTTCGTATTTCTCCTTGGCATCGTCATCACACCTT
TTGGTCTCTTTCCGAGGCATCCTTCAATTTAA

Synonyms

Publications