rna2354, rna2354 (mRNA) Nannochloropsis gaditana

Overview
Namerna2354
Unique Namerna2354
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1643
Alignment locationCM002459.1:176996..177363 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100109g10.6605.mrna
Orig protein idgnl|cribi|Naga_100109g10.6605
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:176996..177363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100109g10gene2249Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2354rna2354-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28337.1cds2346Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2354 ID=rna2354|Name=rna2354|organism=Nannochloropsis gaditana|type=mRNA|length=1643bp
CATCACACGCATTACTATTCTTGAGTCAAATTCAAGCTCACCTGTCGCTC
GCAATCTTTTTTTCCTTCCTTCCCACCCCACCCAAATGGGAAAACCCAAG
GGCCCTCTGTCAACATGGGCAGCCTTGGCATCCTGCAGACCTCGGCAAGC
CTCACAGCAGTGATTTTAAATATCTGTCCTATTTTTGATGAAATCCCCGG
TAAGTGTTTATGTCCAGTCGAGCGGCTTTTGTCGCGATGGAAGAGTACTT
CTCGGTGGGAAAATAGGCCCATACGTGGGTACTTCCCCAGAACTCCCCTT
TACCTCCAAGCAAAACTGTCTTTTTGTTATCAAAACAAAAGGCCTCGGTC
ATTCAGCACCCTTGTCTCCACTACATTGATCGAGAGTGGTTTCGGATGTG
AATTACGTCGGTAGCCAGCTTGTCTACCTGAAGGTTGATGGCTGATCGTC
AAGTCTCCCTCATTTGATCGCAATTTCCTATGCTGGCGTCCTTCATGTCA
GGGAATGCTTGTGTCTCGCATTCGCCTCCTCACTCCTCCTTATTCTACTC
CCCGACAGCAATCAAACGGAGTCGATCCACGGGCGATCGCTCCCCTCTCC
TCTTTGTGGCCATTTGGACAAACGCATGCCTATGGATGTTCTACGGCGTC
TTCATCGAAGCTATTCACCCCATAGCCACCACAAATTTCACCGGATTTCT
TTCAGGGTCTTATTTCTTGCTCACCTTCTACGCCTACGCTTCCCCCGTGG
CCAAGACGCGCTTCGCGCAATATTTCGTGCTTGCCCTCTCTTTTGTCCTG
AGCACGGCGACGTACTGCTTCTTCTTCCCTTCCCCGGATACAAGCAGGAC
CCAGGCCCATCTGGGGGCGCTTTGCACCCTTGTCACCATCGCTGTGTACG
CCGCCCCCCTCTCCACCGTCCTGCGGGCCTTGCGCCTGCGCTCGCCCAAG
CCCATCTCCCTCTTTTTCGCCCTGGTCGGCACCCTGAACAGCGTTTTGTG
GGGGGCCTACGGCATTTTGACGGCGGATGCCTGGGTCTACATCCCCAGCG
TTCTCGGTGTCTTCATGTGTCTGACGCAGGCGGCTGTCTTCTTCTGGTTC
GCCGTGGGAAGGGGGGGATTGGAGGGAGGGAAGGAAAGTCGAGGGGAAGG
GTTTGGGGGGAAAGCCCTGTTCGACTTCTTGTCATTACAGGGAGACGGGG
GCAAGGAGATGCAGGCGGCCCTTTTGTGAAACGAGGGGGGGGTCGGAGTG
GCCAATGCGGACGCGGTGGGGGAGGAGCAGGCGCGGTGCTTGACATGTTG
CTCCCGACCGTTGAAACCGATAGATATTGAAATTTAAACATTCAAACGCG
CCGGCAAGGCGTTCGAGAAACGTGGCTACCTGGCCCTTGTCGATGGCGGT
CTTTGTGCACGGAAGTGGGGCGATTCGGTCGACCGAAACGAAGATGCGAC
GGGAGATGGATCGCCTGGGAGCGGGAGAGGGGGATGCCAGCTTTCCTTGG
CTTTTGTGGAGAAATGTGTATGAATCAAATGGAAAATATCGTGTCGGAAA
AGACAAGCTATGAACGAATGACAGACACGCATTTCCAAATATAATAACGT
GATCGAGGGGGGGAAAGAAATCAAACAATGATAGATATATATC
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protein sequence of rna2354

>rna2354-protein ID=rna2354-protein|Name=rna2354|organism=Nannochloropsis gaditana|type=polypeptide|length=67bp
MRVMPSLLGQPSIAGVSPRQLHAGRRILVLVYAHTSHVTWVHLLPFKRFA
HGHRLPQIRAFERKVLN
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mRNA from alignment at CM002459.1:176996..177363+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2354 ID=rna2354|Name=rna2354|organism=Nannochloropsis gaditana|type=mRNA|length=368bp|location=Sequence derived from alignment at CM002459.1:176996..177363+ (Nannochloropsis gaditana)
ATGCGTGTGATGCCAAGTCTACTTGGGCAGCCTTCGATGTGTCAACGTGA
TCAAAGGGCACGAGAAGCGGAGAGGGTGATTCCAAAACCGTTTTGCCGCC
TGCCCTCGTCGTGctcgctcctctcctcttcgggCCGGGGGAACAAATCA
GTCGCGCACGGCACAATCACCGAATCCTTGCTCTACCGGCGTCCACACAC
AGTGCAGGAGTGTCGCCGAGACAACTTCATGCAGGCAGACGGATTCTGGT
GCTGGTGTATGCACATACAAGCCACGTAACTTGggttcacctcctcccct
tcaagcGCTTTGCGCACGGGCATCGCCTTCCACAAATTCGAGCATTCGAA
CGAAAAGTGCTTAACTAG
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Coding sequence (CDS) from alignment at CM002459.1:176996..177363+

>rna2354 ID=rna2354|Name=rna2354|organism=Nannochloropsis gaditana|type=CDS|length=408bp|location=Sequence derived from alignment at CM002459.1:176996..177363+ (Nannochloropsis gaditana)
ATGCGTGTGATGCCAAGTCTACTTGGGCAGCCTTCGATTGCAGGAGTGTC
GCCGAGACAACTTCATGCAGGCAGACGGATTCTGGTGCTGGTGTATGCAC
ATACAAGCCACGTAACTTGggttcacctcctccccttcaagcGCTTTGCG
CACGGGCATCGCCTTCCACAAATTCGAGCATTCGAACGAAAAGTGCTTAA
CTAGATGCGTGTGATGCCAAGTCTACTTGGGCAGCCTTCGATTGCAGGAG
TGTCGCCGAGACAACTTCATGCAGGCAGACGGATTCTGGTGCTGGTGTAT
GCACATACAAGCCACGTAACTTGggttcacctcctccccttcaagcGCTT
TGCGCACGGGCATCGCCTTCCACAAATTCGAGCATTCGAACGAAAAGTGC
TTAACTAG
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Synonyms
Publications