rna2352, rna2352 (mRNA) Nannochloropsis gaditana

Overview
Namerna2352
Unique Namerna2352
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1530
Alignment locationCM002459.1:175365..177057 -

Link to JBrowse

Properties
Property NameValue
ProductMtN3-like protein
Orig transcript idgnl|cribi|Naga_100109g11.6600.mrna
Orig protein idgnl|cribi|Naga_100109g11.6600
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:175365..177057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100109g11gene2248Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2352rna2352-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28332.1cds2344Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2352 ID=rna2352|Name=rna2352|organism=Nannochloropsis gaditana|type=mRNA|length=1530bp
ATGAAGGCGGACGAAAGGAAGGACTCATGTACCAGACGAATCATGCTTCA
AATTGATGTGTTCGCGATATGGGCTCAGAGGTATCCCCGTCTTAAGACGC
AAGTCACATCACTTCCCACCTTGAGGGGCCAATGGAGAGATACTTGGGAA
TTGAACAGGCATATCGCACAAGAAGGGTGCTCCAAAGTGTATCAGATAAG
CAAGCTTCCATGTCGCCCCATCTCCCGTCGCCGCCCACGTCGTCCCCTAG
CTTTGTCCGCAAACGACTACGATGAAAACAGAAGAAAAACGGACGACCCT
TTTACCATTCCTGTCCTGGAGCCCAACCAGCTGCGAATAGTGCGCCCCAT
CGGGGAGCAACGTTTGACTGTGGAAGAGGAGACAGAAACACGCGACGGTG
CGGGACCCCGCGGTGCCTTCGGGCGCATTCGAAACAAGAAATCGAGGACG
GAGCAGCCGGCTCAGATTCGTCGAGAAATGCGAAACATGGGCGTGGGTGC
TCGGTTGTTCGAGGCGGTTGATACCCGGACCGGTCAGGCCTTGGTCTTGA
AGGAATTCCTGCCCATGATGAAAAACGTGGCCATGGGAGAAGTGGAGCTC
TACAGGTACCTCTACGACTGGACACGCCGGAACCAGCCTGCCTGGCTCCC
TTCCGACCTCCCGCTTGTCCCTCTCCACGGCTACTTAACCACCGGGCCGG
AGGTGGAAGACCCCTCCTTCGTACAAGCCTGGAGAGACCGCTTCGGTCCT
TCCCTACCCCCCCCCGTGCCTGGCAATGTCTGGGTGGCCGTGCGCGCCGC
TCGTCTCCTGCCACTCACCTCCGTCCCCCGCCTCGCGCTTGGGGACGCGG
AGAAGTTCCCCTTGGCCTCTCCCGGGGGAGCTGGTTGGTGGGGCCGTTTG
TGGGGGAAAGGAGGGCCGGACCGGGTAGCCTACTTGAAGAACGTGTTCGA
AGGGAGCATCACTGCCGTGTCCTTGCTCCACCAAGCCGGTGTCGTCCATG
GGGCCGTCTCTCCCTCCACCATTTTGGTCTCCACGGCCGACCTCCGGGAG
GGAGGGAGGGAGGGCGGGATGGAGGTGTGGTTGTCGGAGCTGGGCTTCGC
CACGAACGTGTTGAGCCAAGGGACGTTGGATTTTGAGGGGTTGGTCAAGC
GGGATTGGAAGGGGTGCTCGTACGCTCTGCTGGAAGTTTTCCTGCGGCTG
CTTGCAGAGGAGGAGGAGGGTGAGGGCGAGGGGGGGGACGGTCTGGGGAA
GTACGAAGAGGGCTTCACGCTGCCGTTCGCACAGGTGGAGGCGGGGGGTC
TGCAGGCAGTGACGGAGGAGCGGTTCAAGGGGGACGTGAGCGTAGGCCTC
CGGAGCTTGGTCAACAACGAAAGGGCATACCAACAGGCCGTCGCCTGCCT
GGACGCGAAGGGCGGGGCGGGATGGGTCCTGTTACACGACATGGCCAATG
CAGGGAGGTTGGTGGCGCAGGAAGGAGGGGTGTACGGGGTCGGGCCACGC
TTGTTGGCCAGCAGCTTTTGGGAGAGCTAG
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protein sequence of rna2352

>rna2352-protein ID=rna2352-protein|Name=rna2352|organism=Nannochloropsis gaditana|type=polypeptide|length=251bp
MGSLGILQTSASLTAVILNICPIFDEIPAIKRSRSTGDRSPLLFVAIWTN
ACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQY
FVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVL
RALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCL
TQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGDGGKEMQAAL
L
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mRNA from alignment at CM002459.1:175365..177057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2352 ID=rna2352|Name=rna2352|organism=Nannochloropsis gaditana|type=mRNA|length=1693bp|location=Sequence derived from alignment at CM002459.1:175365..177057- (Nannochloropsis gaditana)
CGTGCCCTTTGATCACGTTGACACATCGAAGGCTGCCCAAGTAGACTTGG
CATCACACGCATTACTATTCTTGAGTCAAATTCAAGCTCACCTGTCGCTC
GCAATCTTTTTTTCCTTCCTTCCCACCCCACCCAAATGGGAAAACCCAAG
GGCCCTCTGTCAACATGGGCAGCCTTGGCATCCTGCAGACCTCGGCAAGC
CTCACAGCAGTGATTTTAAATATCTGTCCTATTTTTGATGAAATCCCCGG
TAAGTGTTTATGTCCAGTCGAGCGGCTTTTGTCGCGATGGAAGAGTACTT
CTCGGTGGGAAAATAGGCCCATACGTGGGTACTTCCCCAGAACTCCCCTT
TACCTCCAAGCAAAACTGTCTTTTTGTTATCAAAACAAAAGGCCTCGGTC
ATTCAGCACCCTTGTCTCCACTACATTGATCGAGAGTGGTTTCGGATGTG
AATTACGTCGGTAGCCAGCTTGTCTACCTGAAGGTTGATGGCTGATCGTC
AAGTCTCCCTCATTTGATCGCAATTTCCTATGCTGGCGTCCTTCATGTCA
GGGAATGCTTGTGTCTCGCATTCGCCTCCTCACTCCTCCTTATTCTACTC
CCCGACAGCAATCAAACGGAGTCGATCCACGGGCGATCGCTCCCCTCTCC
TCTTTGTGGCCATTTGGACAAACGCATGCCTATGGATGTTCTACGGCGTC
TTCATCGAAGCTATTCACCCCATAGCCACCACAAATTTCACCGGATTTCT
TTCAGGGTCTTATTTCTTGCTCACCTTCTACGCCTACGCTTCCCCCGTGG
CCAAGACGCGCTTCGCGCAATATTTCGTGCTTGCCCTCTCTTTTGTCCTG
AGCACGGCGACGTACTGCTTCTTCTTCCCTTCCCCGGATACAAGCAGGAC
CCAGGCCCATCTGGGGGCGCTTTGCACCCTTGTCACCATCGCTGTGTACG
CCGCCCCCCTCTCCACCGTCCTGCGGGCCTTGCGCCTGCGCTCGCCCAAG
CCCATCTCCCTCTTTTTCGCCCTGGTCGGCACCCTGAACAGCGTTTTGTG
GGGGGCCTACGGCATTTTGACGGCGGATGCCTGGGTCTACATCCCCAGCG
TTCTCGGTGTCTTCATGTGTCTGACGCAGGCGGCTGTCTTCTTCTGGTTC
GCCGTGGGAAGGGGGGGATTGGAGGGAGGGAAGGAAAGTCGAGGGGAAGG
GTTTGGGGGGAAAGCCCTGTTCGACTTCTTGTCATTACAGGGAGACGGGG
GCAAGGAGATGCAGGCGGCCCTTTTGTGAAACGAGGGGGGGGTCGGAGTG
GCCAATGCGGACGCGGTGGGGGAGGAGCAGGCGCGGTGCTTGACATGTTG
CTCCCGACCGTTGAAACCGATAGATATTGAAATTTAAACATTCAAACGCG
CCGGCAAGGCGTTCGAGAAACGTGGCTACCTGGCCCTTGTCGATGGCGGT
CTTTGTGCACGGAAGTGGGGCGATTCGGTCGACCGAAACGAAGATGCGAC
GGGAGATGGATCGCCTGGGAGCGGGAGAGGGGGATGCCAGCTTTCCTTGG
CTTTTGTGGAGAAATGTGTATGAATCAAATGGAAAATATCGTGTCGGAAA
AGACAAGCTATGAACGAATGACAGACACGCATTTCCAAATATAATAACGT
GATCGAGGGGGGGAAAGAAATCAAACAATGATAGATATATATC
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Coding sequence (CDS) from alignment at CM002459.1:175365..177057-

>rna2352 ID=rna2352|Name=rna2352|organism=Nannochloropsis gaditana|type=CDS|length=1512bp|location=Sequence derived from alignment at CM002459.1:175365..177057- (Nannochloropsis gaditana)
CAATCAAACGGAGTCGATCCACGGGCGATCGCTCCCCTCTCCTCTTTGTG
GCCATTTGGACAAACGCATGCCTATGGATGTTCTACGGCGTCTTCATCGA
AGCTATTCACCCCATAGCCACCACAAATTTCACCGGATTTCTTTCAGGGT
CTTATTTCTTGCTCACCTTCTACGCCTACGCTTCCCCCGTGGCCAAGACG
CGCTTCGCGCAATATTTCGTGCTTGCCCTCTCTTTTGTCCTGAGCACGGC
GACGTACTGCTTCTTCTTCCCTTCCCCGGATACAAGCAGGACCCAGGCCC
ATCTGGGGGCGCTTTGCACCCTTGTCACCATCGCTGTGTACGCCGCCCCC
CTCTCCACCGTCCTGCGGGCCTTGCGCCTGCGCTCGCCCAAGCCCATCTC
CCTCTTTTTCGCCCTGGTCGGCACCCTGAACAGCGTTTTGTGGGGGGCCT
ACGGCATTTTGACGGCGGATGCCTGGGTCTACATCCCCAGCGTTCTCGGT
GTCTTCATGTGTCTGACGCAGGCGGCTGTCTTCTTCTGGTTCGCCGTGGG
AAGGGGGGGATTGGAGGGAGGGAAGGAAAGTCGAGGGGAAGGGTTTGGGG
GGAAAGCCCTGTTCGACTTCTTGTCATTACAGGGAGACGGGGGCAAGGAG
ATGCAGGCGGCCCTTTTGTGAATGGGCAGCCTTGGCATCCTGCAGACCTC
GGCAAGCCTCACAGCAGTGATTTTAAATATCTGTCCTATTTTTGATGAAA
TCCCCGCAATCAAACGGAGTCGATCCACGGGCGATCGCTCCCCTCTCCTC
TTTGTGGCCATTTGGACAAACGCATGCCTATGGATGTTCTACGGCGTCTT
CATCGAAGCTATTCACCCCATAGCCACCACAAATTTCACCGGATTTCTTT
CAGGGTCTTATTTCTTGCTCACCTTCTACGCCTACGCTTCCCCCGTGGCC
AAGACGCGCTTCGCGCAATATTTCGTGCTTGCCCTCTCTTTTGTCCTGAG
CACGGCGACGTACTGCTTCTTCTTCCCTTCCCCGGATACAAGCAGGACCC
AGGCCCATCTGGGGGCGCTTTGCACCCTTGTCACCATCGCTGTGTACGCC
GCCCCCCTCTCCACCGTCCTGCGGGCCTTGCGCCTGCGCTCGCCCAAGCC
CATCTCCCTCTTTTTCGCCCTGGTCGGCACCCTGAACAGCGTTTTGTGGG
GGGCCTACGGCATTTTGACGGCGGATGCCTGGGTCTACATCCCCAGCGTT
CTCGGTGTCTTCATGTGTCTGACGCAGGCGGCTGTCTTCTTCTGGTTCGC
CGTGGGAAGGGGGGGATTGGAGGGAGGGAAGGAAAGTCGAGGGGAAGGGT
TTGGGGGGAAAGCCCTGTTCGACTTCTTGTCATTACAGGGAGACGGGGGC
AAGGAGATGCAGGCGGCCCTTTTGTGAATGGGCAGCCTTGGCATCCTGCA
GACCTCGGCAAGCCTCACAGCAGTGATTTTAAATATCTGTCCTATTTTTG
ATGAAATCCCCG
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Synonyms
Publications