EWM28332.1, cds2344 (CDS) Nannochloropsis gaditana

Overview
NameEWM28332.1
Unique Namecds2344
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:176809..176893 -
Alignment locationCM002459.1:175779..176449 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28332.1
ProductMtN3-like protein
Orig transcript idgnl|cribi|Naga_100109g11.6600.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:176809..176893 -
CM002459.1supercontigCM002459.1:175779..176449 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM28332.1 vs. NCBI_GenBank
Match: gi|585110681|gb|EWM28332.1| (MtN3-like protein [Nannochloropsis gaditana])

HSP 1 Score: 503.827 bits (1296), Expect = 2.885e-180
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0
Query:    1 MGSLGILQTSASLTAVILNICPIFDEIPAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGDGGKEMQAALL 251
            MGSLGILQTSASLTAVILNICPIFDEIPAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGDGGKEMQAALL
Sbjct:    1 MGSLGILQTSASLTAVILNICPIFDEIPAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGDGGKEMQAALL 251          
BLAST of EWM28332.1 vs. NCBI_GenBank
Match: gi|585110682|gb|EWM28333.1| (MtN3-like protein [Nannochloropsis gaditana])

HSP 1 Score: 448.743 bits (1153), Expect = 1.706e-158
Identity = 224/229 (97.82%), Postives = 225/229 (98.25%), Query Frame = 0
Query:   23 IFDEIPAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGDGGKEMQAALL 251
            +F    AIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGDGGKEMQAALL
Sbjct:   21 LFYSPTAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGDGGKEMQAALL 249          
BLAST of EWM28332.1 vs. NCBI_GenBank
Match: gi|299470883|emb|CBN78832.1| (MtN3-like protein [Ectocarpus siliculosus])

HSP 1 Score: 110.153 bits (274), Expect = 7.366e-26
Identity = 70/215 (32.56%), Postives = 112/215 (52.09%), Query Frame = 0
Query:    7 LQTSASLTAVILNICPIFDEIPAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSF--VLSTATYCF--FFPSPDT---------------SRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQ 202
            L+ SA  +A +L + PI  E   ++RS+  G+RS   FV +W ++ LW+ YG+FI  I P   TN  G     Y+    YA+A   A  + + Y + A +F  +    T+C   F P P++                R Q  LG   +  T   Y APL+ +++ +R RS + +SL  A+V  + S LW +YG++  +A++Y+P+VLGV   +TQ
Sbjct:    5 LKLSALGSASLLFVAPI-HEFEEVRRSKHVGERSVFPFVCMWASSTLWLIYGLFIGDIVPTVVTNLLGLACSCYYC-AVYAWAVEPASRKSSTYNLFAATFLGICVVVTFCLGTFSPRPESWVSMQDADSTDSGGDERAQRFLGIAASAATAIQYGAPLAELVKVIRRRSTEGMSLALAVVSLVCSTLWMSYGVMLVNAFIYVPNVLGVCFSVTQ 217          
BLAST of EWM28332.1 vs. NCBI_GenBank
Match: gi|952513707|gb|KRT80241.1| (hypothetical protein AMK59_8622 [Oryctes borbonicus])

HSP 1 Score: 86.2705 bits (212), Expect = 6.532e-17
Identity = 60/223 (26.91%), Postives = 111/223 (49.78%), Query Frame = 0
Query:    5 GILQTSASLTAVI-----LNICPIFDEIPAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEA-----IHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLE 217
             +L T+AS++ +I     L IC +      I R R TGD SP  F++   +  LW+ YG+ I       ++ I +T F G++      + FY Y+  + ++   + F   +  +++T  Y  +  S D    + ++G LC ++T+  +AAPL++V+  L+ +S   +     L G + +  W AYG+L  D ++ IP+ LG  +  +Q  +F  +      +E
Sbjct:    8 NLLATTASISTLIQFLSGLFICKM------IARKRGTGDMSPFPFISGHLSTSLWLRYGLLINDFSLIFVNTIGSTLFLGYV------VVFYYYS--IKRSMIVKQFTGCMLLLVTTVLYSVW--SEDVLMVRRNIGTLCCVITVVFFAAPLTSVIHVLKTKSTDSLPFPIILTGFIVTSQWYAYGVLLKDEFIQIPNFLGTVLTFSQLCLFCIYPSKNQDIE 214          
BLAST of EWM28332.1 vs. NCBI_GenBank
Match: gi|570334858|gb|ETO82806.1| (hypothetical protein F444_03097 [Phytophthora parasitica P1976])

HSP 1 Score: 85.1149 bits (209), Expect = 5.753e-16
Identity = 62/215 (28.84%), Postives = 105/215 (48.84%), Query Frame = 0
Query:   31 KRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSR----TQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGD 241
            +++RST D S L  V I+ N+   +FY   I    P+  T+  G + G +   +FY +A+   +    + F ++ S  L+   Y F   S  T +    T+  LG +    T  +YA+P++T++R +R ++   I     +V  LNS  WG YG L  + ++ +P+++GV + LTQ  V F +   R      K+S       + L D L + GD
Sbjct:   34 RKNRSTADMSVLPCVMIFGNSYGAVFYAYAISNYLPLFATSMLGVIVGVFMTYSFYIWATD--RREVVRIFAISASVFLAVTVYGFLALSGVTGQSNHSTETTLGFIMVGFTTLMYASPMATIIRVVRTKTATSIPFTMGVVNVLNSFCWGVYGELIRNNFLLVPNIIGVTLSLTQMLVTFIY---RSKEVNDKQSVAT--SSEDLVDILVVPGD 241          
BLAST of EWM28332.1 vs. NCBI_GenBank
Match: gi|1175866703|ref|XP_020587104.1| (bidirectional sugar transporter SWEET13-like [Phalaenopsis equestris])

HSP 1 Score: 84.3445 bits (207), Expect = 7.786e-16
Identity = 54/166 (32.53%), Postives = 85/166 (51.20%), Query Frame = 0
Query:   30 IKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLG 195
            I R +ST D   L +V    +A LWMFY       + + T N  G +  + +++ F  YAS  A+    +   L    +LS    C    S D+ R Q  LG +C + ++ V+AAPLS +   +R +S + +    +L  TL++V W  +GI T D +V +P+VLG
Sbjct:   37 IYRRKSTEDFQSLPYVVALLSAMLWMFYAFIKSNAYLLVTINSFGCVIETTYIIIFLIYASTKARVHTIKMMALLNVGLLSFIVLCILLISNDSLRLQV-LGWICVIFSVTVFAAPLSIIREVIRSKSVEYMPFTLSLFLTLSAVAWFFFGIFTKDIYVALPNVLG 201          
BLAST of EWM28332.1 vs. NCBI_GenBank
Match: gi|551672866|ref|XP_005839189.1| (hypothetical protein GUITHDRAFT_92383 [Guillardia theta CCMP2712] >gi|428183351|gb|EKX52209.1| hypothetical protein GUITHDRAFT_92383 [Guillardia theta CCMP2712])

HSP 1 Score: 83.1889 bits (204), Expect = 1.260e-15
Identity = 60/226 (26.55%), Postives = 109/226 (48.23%), Query Frame = 0
Query:    6 ILQTSASLTAVILNICPIFDEIPAI---KRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLT-FYAYASPVAKTRFAQYFVLALSFVLSTA-TYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEG 226
            I++  A    VIL+    F  +PAI   +R+++ G+ +P  FV ++ NA  W+ Y    +  +  A  NF G L G +++LT +Y  AS   + R        +S  L    + C+F    D       LG    ++ + ++A+PLS+  + ++ +S   I+  FA++  +N  +W  YG+   D ++ IP+ LG+ + L Q A+ F F   +        +  +G
Sbjct:    9 IIEVVAPALGVILSTGLGFGPLPAILKCRRNKTLGETNPDPFVMLFGNAVGWIIYAASTKNAYVFAG-NFFGVLLGMFYVLTGYYLTASDTIRRRLEIMMGTVISLWLIVGYSACYF---EDVKHRNDLLGITANILCLTLFASPLSSAAKVIQTKSAASINPIFAVMQVVNCTMWTTYGLAINDIFLLIPNALGLVLGLMQCALLFLFRGAKANQNSEPAASEDG 230          
BLAST of EWM28332.1 vs. NCBI_GenBank
Match: gi|1207971373|ref|XP_021376428.1| (sugar transporter SWEET1-like [Mizuhopecten yessoensis] >gi|1205888417|gb|OWF39360.1| Sugar transporter SWEET1 [Mizuhopecten yessoensis])

HSP 1 Score: 82.8037 bits (203), Expect = 1.419e-15
Identity = 58/193 (30.05%), Postives = 97/193 (50.26%), Query Frame = 0
Query:   14 TAVILNICPIFDEIPAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVF 206
            T+VI+ +  I   +  IK+  STGD SP+ F+  +  ACLW  YG+ I+ I  +   N    L   ++L+ FY +   V K++F + F ++   +     Y  ++   D +   AH G+ C L++I  YAAPL+++   +R RS + +S        + ++ W  YGI   D  V   + LG  +C  Q  +F
Sbjct:   14 TSVIVQLVGIEVCMRIIKKG-STGDISPIPFLTYFIVACLWAKYGI-IQNITQVLVVNSFASLLQFFYLVIFYTFT--VRKSQFVKLFFVSSVILFLPLIYVKYY-QEDEALATAHFGSFCVLMSIIAYAAPLASLKDVVRSRSTECMSFPLVFANFVVAIEWFVYGITIKDVNVQCSNCLGAVLCFIQLGLF 201          
BLAST of EWM28332.1 vs. NCBI_GenBank
Match: gi|675182701|ref|XP_008900235.1| (hypothetical protein PPTG_07713 [Phytophthora parasitica INRA-310] >gi|568100017|gb|ETN14723.1| hypothetical protein PPTG_07713 [Phytophthora parasitica INRA-310])

HSP 1 Score: 83.9593 bits (206), Expect = 1.601e-15
Identity = 61/215 (28.37%), Postives = 105/215 (48.84%), Query Frame = 0
Query:   31 KRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYASPVAKTRFAQYFVLALSFVLSTATYCFFFPSPDTSR----TQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGEGFGGKALFDFLSLQGD 241
            +++RST D S L  V I+ N+   +FY   I    P+  T+  G + G +   +FY +A+   +    + F ++ S  L+   Y F   S  T +    T+  LG +    T  +YA+P++T++R +R ++   +     +V  LNS  WG YG L  + ++ +P+++GV + LTQ  V F +   R      K+S       + L D L + GD
Sbjct:   34 RKNRSTADMSVLPCVMIFGNSYGAVFYAYAISNYLPLFATSMLGVIVGVFMTYSFYIWATD--RREVVRIFAISASVFLAVTVYGFLALSGVTGQSNHSTETTLGFIMVGFTTLMYASPMATIIRVVRTKTATSMPFTMGVVNVLNSFCWGVYGELIRNNFLLVPNIIGVTLSLTQMLVTFIY---RSKEVNDKQSVAT--SSEDLVDILVVPGD 241          
BLAST of EWM28332.1 vs. NCBI_GenBank
Match: gi|301115904|ref|XP_002905681.1| (MtN3-like protein [Phytophthora infestans T30-4] >gi|262110470|gb|EEY68522.1| MtN3-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 82.8037 bits (203), Expect = 1.646e-15
Identity = 65/230 (28.26%), Postives = 109/230 (47.39%), Query Frame = 0
Query:    1 MGSLGILQTSASLTAVILNICPIFDEIPAIKRSRSTGDRSPLLFVAIWTNACLWMFYGVFIEAIHPIATTNFTGFLSGSYFLLTFYAYA--SPVAKTRFAQ---YFVLALSFVLSTATYCFFFPSPDTSRTQAHLGALCTLVTIAVYAAPLSTVLRALRLRSPKPISLFFALVGTLNSVLWGAYGILTADAWVYIPSVLGVFMCLTQAAVFFWFAVGRGGLEGGKESRGE 225
            + SL +L T +S   V+LN+ P + E   I R R+ G  + L  V ++ N+ LW  YG  I  + P+  T   G  + + F+  +Y ++   P  +   A+      L +S+V+  A     F +    +    LG LC  V I +YA+PL T+ R ++ +S   + +    V  LN +LW A+G++  D +V  P+ +G      Q A++F +           ESR E
Sbjct:    5 LESLRVLTTCSS---VLLNVSP-WPEFARINRQRTPGPLTVLPVVMLYCNSFLWTMYGFMIGQLFPLFATCSLGQCTCAGFIAIYYRWSPDRPAVRRLVAKAGSVMALCMSYVILGANE---FTNQSREQVITTLGLLCISVNICLYASPLDTMKRVVQTKSAASLPISLCSVNLLNGLLWVAFGLVDGDYFVLTPNTIGSVRSAAQVALYFTYC-------NTDESRLE 220          
The following BLAST results are available for this feature:
BLAST of EWM28332.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110681|gb|EWM28332.1|2.885e-180100.00MtN3-like protein [Nannochloropsis gaditana][more]
gi|585110682|gb|EWM28333.1|1.706e-15897.82MtN3-like protein [Nannochloropsis gaditana][more]
gi|299470883|emb|CBN78832.1|7.366e-2632.56MtN3-like protein [Ectocarpus siliculosus][more]
gi|952513707|gb|KRT80241.1|6.532e-1726.91hypothetical protein AMK59_8622 [Oryctes borbonicu... [more]
gi|570334858|gb|ETO82806.1|5.753e-1628.84hypothetical protein F444_03097 [Phytophthora para... [more]
gi|1175866703|ref|XP_020587104.1|7.786e-1632.53bidirectional sugar transporter SWEET13-like [Phal... [more]
gi|551672866|ref|XP_005839189.1|1.260e-1526.55hypothetical protein GUITHDRAFT_92383 [Guillardia ... [more]
gi|1207971373|ref|XP_021376428.1|1.419e-1530.05sugar transporter SWEET1-like [Mizuhopecten yessoe... [more]
gi|675182701|ref|XP_008900235.1|1.601e-1528.37hypothetical protein PPTG_07713 [Phytophthora para... [more]
gi|301115904|ref|XP_002905681.1|1.646e-1528.26MtN3-like protein [Phytophthora infestans T30-4] >... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2352rna2352Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications