rna235, rna235 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna235
Unique Name	rna235
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1353
Alignment location	CM002455.1:592272..595273 +

Link to JBrowse

Properties


Property Name	Value
Product	nuclear cap-binding protein subunit 1
Orig transcript id	gnl\|cribi\|Naga_100100g3.8917.mrna
Orig protein id	gnl\|cribi\|Naga_100100g3.8917
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:592272..595273 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100100g3	gene224	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna235	rna235-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30449.1	cds235	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:592272..595273+
coding sequence from alignment at CM002455.1:592272..595273+

mRNA sequence

>rna235 ID=rna235|Name=rna235|organism=Nannochloropsis gaditana|type=mRNA|length=1353bp
GAGGCTGCAGCGATGAGGTCTCGCCTCTTTTTCCTGCTGCATGGAAGCAA
CGAGCACCGGACTGGAAAGGGTAGAGGAACCTGCGGGTACTGCGCACACA
GCCTACCCTCCTCAAGCTTCTTTTTATTGCACACTTGCAGGTAAGCTGGT
TGTCTTCTCAAGTGGACACGCATTTTTGCCTGCAGGAGGTATTGTTCTGG
CAACTCATCACTCTTGAGGAAGAACGATAAATTTTTGTCAAGAAAATAAA
ACCAGTTTGGCAATGCTGGTTCATTTTTCCGTCGTTGCTTTGTTTTTGTT
TGCCGCAAAGTTGAGCCGAGTCGGCGGTCAAAGTGACCATGCAGAGCCAA
AGGAGGGTAATTTCAGGCTTCAGAACGGCGTGGAGATGCCTTTGGTTGGA
TTCGGCACGGCAGGTTTGGGGGACGGCGAGCAACTGGCCCCGCTGTACGC
GATCCTCAAGGGCTTTCGGCATATAGACACGGCCCAGGCTACTGAATGGT
ACAATGAAGCAGCGATTGCCCAATCTGTGGATGAATGCGGAATGGCGCGA
GAGAAGCTCTTTCTCGTGACCAAAGTGCATCCCCGATATTTCGGTTACGA
AAGAACATTGCGTTCCTTCAACCATTCACTGGCCGCGCTCCGCACAAGCT
ACGTAGATCTGCTGCTCCTTCATACGTCTGACTGCTCGGACTGGACAGGC
CTTTGTGAAAAAGACTCGAGTCGGGGTACCTTCTTCGACGCGTGGAGAGC
CCTGGAGAGCTTGTACCAGAAGGGGCAAGTGAAAGCCATAGGCGTATCAA
ATTTCAATGTGGAACAACTGGAAGCTCTGTCGAGCACCGCTGTGGTCCCC
ATCCACGTTGTGCAAAATCACATGGATCCATTCAAGCAGGACCGAGAGGT
CCGCGCTTGGTGCCAGGCCCGCGGCGTCCTCTACACAGGCTACTCGACAC
TGGGGACACAGTGGCGACCGCCCGGCGGACAAAACCCCGTTTTAAATCAC
CCCGTCATTCAGACCCTCGCGCAGCGCCACGGGGTCTCTCCCGCCTTGCT
AGTACTGGTTTGGGCGCGGCAAGAGGGCGTGGCCGTCATCCCTCGCTCCT
CGGAGGCGAAACACATCGATGAGCTGGCCCGATTGCTGCCCAAGGCGAAA
GATCGCGTCCAGTTGGTGCTGAGCGAGGACGAGATGAAGCAGATGCAGGC
CTTGGACGGCGTGGATGGCTCGAACCTTCGGGATGAATTGTAATTTAAGC
GTCTCAGGCCCAAAAATAGAGGGAAACAAGCACGGCCCACGAAAGACCTG
GTTTTCCTCTCCTTTTTTCTGGGAAACTAAATTGCGTTATCTGGCGTTCG
AAA

protein sequence of rna235

>rna235-protein ID=rna235-protein|Name=rna235|organism=Nannochloropsis gaditana|type=polypeptide|length=963bp
MQQLMAFCATIQVGHSSHHVSLFVHAYVYQTLSQAREMSYHAAGNYGPPP
GSGGGGRGYGGPDRKRYRGDESHGGGYHGNHGGGGGRYRGDRARYNQDRR
GGDRGPPAKKPKTKEDEIMTQIKALLVRVGDFHHITTSLSSLEENVEGLA
GALGDELATFGDLIADFVLTAACQLSLQTPVYATLVGLLNARDEDFGAKV
VQGGAVRLDAMIRQGRWINAKLVLRFLCELVNARVVKAEGEGSLGEVLTT
LAGPLKEPDAAVPPARKDLYLYLVVSVLPWVWDALAQEWPDGLPALLETT
FAYADRRVPLYLKKGVRCVLDASLEDEEDGVEEAGASGHPVEPATDSIQR
ALRVVKTLAATLEEGQASLEINAIVKPWKGVKEELSQGIRHAIPPLTLPD
PDPMVLATGGFPLPLHPCFAEFDLFDAESGGQAASVATLPPIERWVLREC
LKDSLVTFRPYVNEAGNKRGSFAAEVEQLYSISYLAPPEVATEFLVAEVL
LLWLVQRPSRDLAYLHRLLLQVVQTPKAAGSMALGLHILFQDYLEVLDHG
AVTQLANWFGAHLTNTQFTFPYWDAWAGLVAEQEAEDHPQRYFLRRALDV
AARQSYVGKVKEHIPASLHPYVPEDPYSLSPYLPRAAAVEEDNAADAAST
QILKVLVRHFQAVLQGQMPAAEVQAWLDSSVAPPADIATSDPLWRVTLVA
HALSRISDDTVAHLPALLEKCLGWFRQLFEADEHQLRMVEALAEVWAGSP
QMLLLALNAVMRMHMVLPVNLVAWLVRPETARRYAQDALYHDLFVDAVDR
SLESVANYGELISRALGPHPPATGQSEEARARQCAGEETVEHGIVAVENA
QDLLLELVEGLSKVLGEGLASSAEQASEWVRAGLAYLRGTLQIYLQLEEK
GLNRVIPGTEPVFDLSKVEESIGPLESLHPALHGVMLDVRRYIDDRQVFG
GVHAHGQVFSDEE

mRNA from alignment at CM002455.1:592272..595273+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna235 ID=rna235|Name=rna235|organism=Nannochloropsis gaditana|type=mRNA|length=3002bp|location=Sequence derived from alignment at CM002455.1:592272..595273+ (Nannochloropsis gaditana)
ATGCAACAACTAATGGCATTCTGTGCCACCATCCAGGTCGGTCATTCATC
CCACCACGTCTCACTTTTTGTCCATGCATACGTCTACCAAACTCTAAGCC
AGGCCCGTGAGATGAGTTACCATGCGGCCGGGAACTACGGGCCACCGCca
ggcagcggaggaggaggaagaggttaCGGTGGGCCCGACCGGAAACGATA
CCGAGGAGACGAATCCCATGGAGGCGGATATCACGGAAAtcatggtggag
gtggcgggaggtACCGCGGCGACCGGGCACGGTATAACCAAGACAGACGA
GGTGGCGATCGAGGCCCCCCGGCTAAGAAACCGAAAACAAAAGAGGACGA
AATCATGACGCAAATCAAAGCTTTGTTGGTGCGCGTTGGAGACTTCCACC
ACATAACTACGTCTCTTTCCagcttggaggagaatgTCGAGGGTTTGGCA
GGGGCATTGGGTGATGAGCTGGCTACGTTTGGAGACTTGATCGCGGACTT
CGTGTTGACCGCTGCTTGCCAGCTTTCGCTCCAGACCCCCGTGTATGCCA
CTCTAGTGGGGCTCTTGAATGCCCGGGACGAAGACTTTGGCGCCAAGGTC
GTTCAAGGGGGGGCGGTGCGATTGGACGCCATGATCCGGCAGGGCCGTTG
GATTAACGCGAAGCTggtcctccgcttcctctgcGAGCTCGTGAACGCCC
GCGTGGTGAAagcagaaggcgaagggagcCTGGGAGAGGTCCTGACGACA
CTGGCCGGGCCCCTGAAGGAGCCGGATGCTGCGGTCCCCCCGGCGAGGAA
GGACTTGTACCTGTATCTGGTCGTGTCTGTGCTGCCCTGGGTGTGGGATG
CTCTGGCGCAGGAGTGGCCGGACGGTCTCCCGGCCCTCTTGGAGACCACC
TTCGCGTATGCAGACAGGCGAGTGCCGCTGTACTTGAAAAAGGGTGTTCG
CTGTGTCTTGGACGCGAGCttagaggacgaggaggacggggtggaggagg
caggagctAGTGGCCACCCCGTCGAGCCTGCCACGGACTCGATCCAGAGG
GCCCTGAGGGTGGTCAAGACCCTGGCGGCCACTCTTGAAGAAGGTCAGGC
CTCTCTGGAGATCAACGCCATCGTCAAGCCCTggaagggcgtgaaggagg
agttGTCTCAAGGCATTCGGCACgcgatcccccccctcacGCTGCCCGAC
CCCGACCCCATGGTCCTGGCGACTGGCGGCTTTCCCCTACCCCTGCACCC
GTGTTTCGCCGAGTTCGACCTCTTCGATGCGGAAAGCGGAGGCCAAGCCG
CCTCTGTGGCCACGCTACCCCCGATAGAGCGGTGGGTGCTGCGGGAGTGC
CTGAAAGACAGCTTGGTTACTTTTCGCCCTTACGTGAACGAGGCTGGGAA
CAAGCGGGGCTCTTTTGCGGCAGAAGTCGAGCAGCTCTATTCAATTTCTT
ATCTAGCCCCGCCGGAGGTGGCCACAGAGTTCTTGGTGGCGGAAGTTCTG
CTCCTTTGGCTCGTGCAGCGCCCCAGTCGCGACCTCGCCTACTTGCACCG
GCTGCTTCTGCAGGTGGTTCAGACCCCCAAAGCCGCGGGATCCATGGCTC
TGGGCTTGCATATACTGTTTCAAGACTACTTGGAAGTGCTCGACCATGGC
GCCGTGACACAACTTGCCAACTGGTTCGGCGCCCACTTGACCAACACGCA
GTTCACGTTTCCCTATTGGGACGCATGGGCCGGCCTGGTCGCTGAGCAGG
AAGCAGAGGATCACCCGCAGCGGTACTTTCTGCGGCGGGCTTTGGATGTG
GCGGCGCGTCAGAGCTACGTTGGGAAGGTGAAAGAGCAtatccctgcctc
cctccacccctacGTGCCCGAAGACCCCTActcgctctctccctacCTGC
CTCGGGCCGCGGCCGTGGAAGAAGACAACGCGGCGGACGCGGCCTCGACG
CAGATCCTGAAGGTGCTTGTGCGTCATTTCCAGGCGGTTCTTCAGGGACA
AATGCCGGCCGCAGAAGTGCAAGCCTGGCTTGATTCGAGCGTGGCCCCGC
CAGCGGATATCGCCACTTCGGACCCGCTCTGGCGTGTGACTCTGGTCGCT
CACGCCTTGTCACGGATCTCGGACGACACCGTGGCGCATTTGCCCGCGCT
CTTGGAGAAGTGCTTGGGCTGGTTCCGCCAGCTGTTCGAGGCGGACGAGC
ACCAGCTGCgaatggtggaggccctggccgaggTATGGGCCGGGAGCCCT
CaaatgctgctgctggcacTCAACGCGGTCATGCGCATGCACATGGTGCT
CCCCGTGAACCTGGTGGCTTGGTTGGTGCGCCCAGAGACGGCACGCCGGT
ACGCCCAGGACGCATTATATCACGACCTGTTTGTGGACGCCGTCGACCGC
TCGCTCGAGTCCGTGGCGAACTATGGAGAGCTGATCAGTCGAGCTTTGGG
CCCTCATCCGCCGGCGACAGGTCAgtcggaggaagcgagggcaAGGCAAT
GCGCCGGAGAGGAGACGGTGGAGCACGGGATAGTGGCAGTAGAGAACGCC
CAGGACCTTCTGTTGGAGCTTGTCGAGGGCTTGAGCAAGGTGCTGGGGGA
AGGGCTAGCGTCTTCTGCTGAACAAGCCAGTGAATGGGTTCGAGCAGGTT
TGGCATATCTGCGAGGAACGTTGCAAATATATTTGCAgctggaagagaaa
gggttAAATCGGGTCATCCCAGGGACAGAGCCTGTGTTCGATCTGAGCAA
GGTGGAGGAGTCCATAGGGCCTCTCGAGTCCTTACACCCAGCTCTTCATG
GCGTGATGCTCGACGTTCGACGATATATCGATGATCGTCAGGTTTTCGGG
GGGGTCCACGCCCATGGGCAGGTCTTCTCGGACGAGGAGTAGGTGCCTAG
GGGAGGAACAATATGAGAAGAGCTTCAGGTTAGCAATATAAGGCGGAAGT
GGATGAGAGTCGTCCACAAAGAATAAAAGCAATCACTAACAAGTGTATTG
GA

Coding sequence (CDS) from alignment at CM002455.1:592272..595273+

>rna235 ID=rna235|Name=rna235|organism=Nannochloropsis gaditana|type=CDS|length=2892bp|location=Sequence derived from alignment at CM002455.1:592272..595273+ (Nannochloropsis gaditana)
ATGCAACAACTAATGGCATTCTGTGCCACCATCCAGGTCGGTCATTCATC
CCACCACGTCTCACTTTTTGTCCATGCATACGTCTACCAAACTCTAAGCC
AGGCCCGTGAGATGAGTTACCATGCGGCCGGGAACTACGGGCCACCGCca
ggcagcggaggaggaggaagaggttaCGGTGGGCCCGACCGGAAACGATA
CCGAGGAGACGAATCCCATGGAGGCGGATATCACGGAAAtcatggtggag
gtggcgggaggtACCGCGGCGACCGGGCACGGTATAACCAAGACAGACGA
GGTGGCGATCGAGGCCCCCCGGCTAAGAAACCGAAAACAAAAGAGGACGA
AATCATGACGCAAATCAAAGCTTTGTTGGTGCGCGTTGGAGACTTCCACC
ACATAACTACGTCTCTTTCCagcttggaggagaatgTCGAGGGTTTGGCA
GGGGCATTGGGTGATGAGCTGGCTACGTTTGGAGACTTGATCGCGGACTT
CGTGTTGACCGCTGCTTGCCAGCTTTCGCTCCAGACCCCCGTGTATGCCA
CTCTAGTGGGGCTCTTGAATGCCCGGGACGAAGACTTTGGCGCCAAGGTC
GTTCAAGGGGGGGCGGTGCGATTGGACGCCATGATCCGGCAGGGCCGTTG
GATTAACGCGAAGCTggtcctccgcttcctctgcGAGCTCGTGAACGCCC
GCGTGGTGAAagcagaaggcgaagggagcCTGGGAGAGGTCCTGACGACA
CTGGCCGGGCCCCTGAAGGAGCCGGATGCTGCGGTCCCCCCGGCGAGGAA
GGACTTGTACCTGTATCTGGTCGTGTCTGTGCTGCCCTGGGTGTGGGATG
CTCTGGCGCAGGAGTGGCCGGACGGTCTCCCGGCCCTCTTGGAGACCACC
TTCGCGTATGCAGACAGGCGAGTGCCGCTGTACTTGAAAAAGGGTGTTCG
CTGTGTCTTGGACGCGAGCttagaggacgaggaggacggggtggaggagg
caggagctAGTGGCCACCCCGTCGAGCCTGCCACGGACTCGATCCAGAGG
GCCCTGAGGGTGGTCAAGACCCTGGCGGCCACTCTTGAAGAAGGTCAGGC
CTCTCTGGAGATCAACGCCATCGTCAAGCCCTggaagggcgtgaaggagg
agttGTCTCAAGGCATTCGGCACgcgatcccccccctcacGCTGCCCGAC
CCCGACCCCATGGTCCTGGCGACTGGCGGCTTTCCCCTACCCCTGCACCC
GTGTTTCGCCGAGTTCGACCTCTTCGATGCGGAAAGCGGAGGCCAAGCCG
CCTCTGTGGCCACGCTACCCCCGATAGAGCGGTGGGTGCTGCGGGAGTGC
CTGAAAGACAGCTTGGTTACTTTTCGCCCTTACGTGAACGAGGCTGGGAA
CAAGCGGGGCTCTTTTGCGGCAGAAGTCGAGCAGCTCTATTCAATTTCTT
ATCTAGCCCCGCCGGAGGTGGCCACAGAGTTCTTGGTGGCGGAAGTTCTG
CTCCTTTGGCTCGTGCAGCGCCCCAGTCGCGACCTCGCCTACTTGCACCG
GCTGCTTCTGCAGGTGGTTCAGACCCCCAAAGCCGCGGGATCCATGGCTC
TGGGCTTGCATATACTGTTTCAAGACTACTTGGAAGTGCTCGACCATGGC
GCCGTGACACAACTTGCCAACTGGTTCGGCGCCCACTTGACCAACACGCA
GTTCACGTTTCCCTATTGGGACGCATGGGCCGGCCTGGTCGCTGAGCAGG
AAGCAGAGGATCACCCGCAGCGGTACTTTCTGCGGCGGGCTTTGGATGTG
GCGGCGCGTCAGAGCTACGTTGGGAAGGTGAAAGAGCAtatccctgcctc
cctccacccctacGTGCCCGAAGACCCCTActcgctctctccctacCTGC
CTCGGGCCGCGGCCGTGGAAGAAGACAACGCGGCGGACGCGGCCTCGACG
CAGATCCTGAAGGTGCTTGTGCGTCATTTCCAGGCGGTTCTTCAGGGACA
AATGCCGGCCGCAGAAGTGCAAGCCTGGCTTGATTCGAGCGTGGCCCCGC
CAGCGGATATCGCCACTTCGGACCCGCTCTGGCGTGTGACTCTGGTCGCT
CACGCCTTGTCACGGATCTCGGACGACACCGTGGCGCATTTGCCCGCGCT
CTTGGAGAAGTGCTTGGGCTGGTTCCGCCAGCTGTTCGAGGCGGACGAGC
ACCAGCTGCgaatggtggaggccctggccgaggTATGGGCCGGGAGCCCT
CaaatgctgctgctggcacTCAACGCGGTCATGCGCATGCACATGGTGCT
CCCCGTGAACCTGGTGGCTTGGTTGGTGCGCCCAGAGACGGCACGCCGGT
ACGCCCAGGACGCATTATATCACGACCTGTTTGTGGACGCCGTCGACCGC
TCGCTCGAGTCCGTGGCGAACTATGGAGAGCTGATCAGTCGAGCTTTGGG
CCCTCATCCGCCGGCGACAGGTCAgtcggaggaagcgagggcaAGGCAAT
GCGCCGGAGAGGAGACGGTGGAGCACGGGATAGTGGCAGTAGAGAACGCC
CAGGACCTTCTGTTGGAGCTTGTCGAGGGCTTGAGCAAGGTGCTGGGGGA
AGGGCTAGCGTCTTCTGCTGAACAAGCCAGTGAATGGGTTCGAGCAGGTT
TGGCATATCTGCGAGGAACGTTGCAAATATATTTGCAgctggaagagaaa
gggttAAATCGGGTCATCCCAGGGACAGAGCCTGTGTTCGATCTGAGCAA
GGTGGAGGAGTCCATAGGGCCTCTCGAGTCCTTACACCCAGCTCTTCATG
GCGTGATGCTCGACGTTCGACGATATATCGATGATCGTCAGGTTTTCGGG
GGGGTCCACGCCCATGGGCAGGTCTTCTCGGACGAGGAGTAG

Synonyms

Publications