rna2348, rna2348 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2348
Unique Name	rna2348
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1380
Alignment location	CM002459.1:166125..167768 -

Link to JBrowse

Properties


Property Name	Value
Product	UBX domain-containing protein
Orig transcript id	gnl\|cribi\|Naga_100109g16.6595.mrna
Orig protein id	gnl\|cribi\|Naga_100109g16.6595
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:166125..167768 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100109g16	gene2244	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28327.1	cds2340	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2348	rna2348-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:166125..167768-
coding sequence from alignment at CM002459.1:166125..167768-

mRNA sequence

>rna2348 ID=rna2348|Name=rna2348|organism=Nannochloropsis gaditana|type=mRNA|length=1380bp
CGTGAAACCGGTGCTGAAAGATTACAAATGATTAATTATACATCTATGTC
TTCCCAATTTAGCAGGATACTTGTATCAGATGACAAAGCTGAGTCGGGAA
AGGAGGCATGTGGCAGCATGGTTGGCAATGGCTAGTGCTTCTTTTGTCGG
TCTAAACCTTTACATGGGGTATCAAGTCTTATATCCCATCCGATTTCCAT
TCGAAGGAAATGCACAACATCCGGTCGTGAGGCAAGCTCTGAACCAAGTA
ACAGATGGAAATTTGAAAGATGATGAGGTCATTCCTCAGCGCAGTGCGGT
TTCTGATGAGCACCCGGTTTCTTTTGGAGCGTGTTGCGGAATAGGACATC
GGCTATCGCGAAATCTACCCACATTGGTCTATGCGCAGGGTCAAAAACGA
TTCGCGCATGCAGTATGGACTGATGTTCCCTGGGATGCAATTTTTGTCGA
CTCGGACATGGTGAAAGCTGGTCATCAGGCTGAAGAACACTTTGCCAACA
GTTTCCCCAAAAATTGGTCTCCTGCAGCAGAAAGCCCGGGGGCAGTCGAA
AAGACGGGTACAACGCGTGATTTTTATATACCCGGTGACATGGTGCGAAT
GTTCGAGTCAAAAGAAATGTGGGCTGTGGTTTCTAAGCTTTCAGCTTCGC
TTTCGCAACGAGTATTGCGTGTCATGGATCCGCGTCGGAAGCAGTACAAG
CCTCTTCATCTATGTGCGCACTTTAGGATCGGAAACAACGAGAAAGGGGA
TTGGGAAGCCAAAACTTGGAGGCAAGTAAACGAATCGATAATAAAAACTC
AAACGTTAGAAGCAATGAAGGCTTGGGCGGCGGAAAGGAAAGATTCAAGC
GAGGTCAGCGTGTTCGTGCCGTCGGACACAGCCGACCTTCCAAAGTGGTT
TGCCGAGCACGTACCCCAAGGTTGGCGCGTGATAAATGCAGACATGGATT
CGGCCAAACCGGAATCAGGGGTCTGGTTTGGACAGTTTGGGTCGAATACC
TCCGCTGCTTTGAACCAAGAGGAAAAGAATGGCGCCATGGCTGAAGCGGT
CGCTGACCTTTTCGGTTTGGGCGAATGCTCTGCCCTTTGGGTACCGACAT
ACAGCAGCTTCTCGTTGACAGGTATCACACAGACTAAAAGAAGGCAGCAA
CCTGTGTTTTTCCGAAAGCTGAGGGAGGAAGGATTCGAAGAGTTGTGAGT
GAAGTCAGTGCTGGCAAGAGAAGCATTCGATAGGAACTACTAACTAACTA
ATTTAACCACAGCTACATGAAGCTGCCTTAAATTTTTCGTGCGAATGATT
CTATGAGTCGCTGAAATCAACTGCCTGTGCGAAATGCGCAGTCTGAATTC
TTACAAAAGCCTCAAGCCAATCCGTGAACA

protein sequence of rna2348

>rna2348-protein ID=rna2348-protein|Name=rna2348|organism=Nannochloropsis gaditana|type=polypeptide|length=547bp
MSSSSQQSSEKVALLKEVTGIEDDDVATFLLSKNNWDIQHAVQEYLSGEP
TLASSPPALVSASSPAGQSHVRRRSTSPGTERRVRAHQQQWLQARRDGKD
AEVEESMGGSAGGGGEGDEAPLLGLRGGGEGNGEERVGAGSMEMEQGGRN
GARGGGASLPFYLVGNVLHTLLAPVRYIAGVGEGMEGETQNPKEAAEAFI
KNYEKEYHCAGVEGGGGGEVEGREGAGEIGEGGGYAWTPRPRPRFLPLSF
QDATRLASREGKLLLVYVHAPLHEHTPAFVQRVLNTDPIVSFLDGNMLVW
GGSVHSADACQTAQILDAAAFPFIALVACQRHPHLSVLEHMEGVTADIGP
EAILQRLTAAMARLQAAMEQQQAVVREREERSRLQAEQNREYQEALEADR
RREAALVAEKARAVQEAEAAQRRAEEEREEEEKKRVVYAQCIAEKQSRLP
PEPAPGSPGALRLRLQFPHGKKLDRRFRPTDSIQIVRDFIDVQVAEEEKG
GKEEGCRLVNYSLSTPFPKRTFGEVGMTLQEVGLHSADTIYITDLDA

mRNA from alignment at CM002459.1:166125..167768-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2348 ID=rna2348|Name=rna2348|organism=Nannochloropsis gaditana|type=mRNA|length=1644bp|location=Sequence derived from alignment at CM002459.1:166125..167768- (Nannochloropsis gaditana)
ATGAGCAGTTCTTCTCAACAAAGTTCGGAGAAAGTGGCCCTCCTGAAAGA
AGTAACGGGCATTGAGGATGATGACGTGGCCACCTTTCTCCTCAGTAAAA
ACAATTGGGATATACAGCACGCCGTGCAAGAGTACCTATCCGGTGAACCT
ACTCTTGCCTCCTCACCCCCTGCCCTAGTCTCCGCCTCCAGTCCCGCGGG
CCAGAGCCACGTGCGGCGGCGTAGCACATCCCCAGGCACAGAGCGTAGGG
TGCGTGCCCATCAACAACAATGGCTACAAGCACGACGGGACGGGAAGGAC
GCGGAAGTGGAGGAGTCCATGGGTGGCAGTGCCGGGGGAGGTGGAGAAGG
AGACGAAGCCCCTCTCCTGGGCCTTCGCGGGGGAGGGGAAGGCAATGGGG
AAGAAAGGGTTGGAGCGGGCAGCATGGAGATGGAGCAAGGAGGACGGAAC
GGAGCTCGGGGAGGGGGGGCGTCTCTCCCCTTCTATTTGGTCGGTAATGT
GCTGCACACGTTGCTCGCACCCGTGCGATACATAGCGGGCGTGGGGGAAG
GGATGGAAGGGGAGACACAGAATCCGAAGGAGGCTGCGGAGGCTTTCATC
AAAAACTACGAGAAAGAGTATCACTGCGCAGGGGTGGAGGGAGGGGGAGG
AGGGGAGGTGGAAGGAAGGGAGGGGGCGGGGGAAATCGGCGAAGGGGGAG
GCTACGCGTGGACCCCGCGGCCCCGTCCTCGATTTCTTCCCCTTTCGTTC
CAAGACGCCACCCGGCTTGCCTCCAGGGAAGGCAAGCTTCTGCTGGTCTA
CGTGCACGCCCCGCTCCACGAGCACACGCCCGCCTTTGTGCAACGCGTCT
TGAACACGGACCCGATCGTCTCCTTTCTGGACGGCAACATGTTGGTCTGG
GGGGGCTCGGTCCACTCCGCCGACGCCTGCCAGACCGCCCAGATCCTCGA
CGCCGCCGCCTTTCCCTTCATTGCTCTCGTCGCCTGTCAGCGGCACCCTC
ACCTGTCCGTCTTGGAGCACATGGAGGGGGTGACGGCAGACATAGGGCCC
GAGGCGATCCTCCAGCGGCTGACGGCGGCCATGGCCCGCCTGCAGGCGGC
AATGGAACAGCAGCAGGCCGTGGTGCGGGAACGGGAGGAACGATCCCGCC
TTCAAGCGGAACAGAACCGCGAGTACCAAGAAGCCTTGGAGGCGGACAGG
CGCCGGGAAGCCGCCTTGGTGGCGGAGAAGGCACGGGCGGTCCAGGAAGC
GGAAGCTGCCCAGAGAAGGGCAGAGGAGGAGAGGGAGGAAGAGGAAAAGA
AACGGGTGGTCTATGCCCAGTGCATCGCCGAGAAACAATCACGGCTTCCT
CCAGAGCCCGCACCTGGGTCACCTGGCGCTTTGCGGTTGCGGTTGCAGTT
CCCCCACGGGAAGAAATTGGACAGAAGGTTCCGTCCCACGGATTCCATCC
AGATCGTGAGGGATTTCATCGACGTGCAGGTGGCGGAAGAGGAGAAGGGG
GGGAAGGAGGAAGGGTGCAGGTTGGTGAACTATAGTCTGTCCACACCGTT
TCCGAAGAGGACCTTTGGCGAGGTAGGAATGACGTTGCAAGAAGTCGGAT
TGCACAGTGCCGACACAATATACATCACAGATTTGGATGCATAG

Coding sequence (CDS) from alignment at CM002459.1:166125..167768-

>rna2348 ID=rna2348|Name=rna2348|organism=Nannochloropsis gaditana|type=CDS|length=1644bp|location=Sequence derived from alignment at CM002459.1:166125..167768- (Nannochloropsis gaditana)
ATGAGCAGTTCTTCTCAACAAAGTTCGGAGAAAGTGGCCCTCCTGAAAGA
AGTAACGGGCATTGAGGATGATGACGTGGCCACCTTTCTCCTCAGTAAAA
ACAATTGGGATATACAGCACGCCGTGCAAGAGTACCTATCCGGTGAACCT
ACTCTTGCCTCCTCACCCCCTGCCCTAGTCTCCGCCTCCAGTCCCGCGGG
CCAGAGCCACGTGCGGCGGCGTAGCACATCCCCAGGCACAGAGCGTAGGG
TGCGTGCCCATCAACAACAATGGCTACAAGCACGACGGGACGGGAAGGAC
GCGGAAGTGGAGGAGTCCATGGGTGGCAGTGCCGGGGGAGGTGGAGAAGG
AGACGAAGCCCCTCTCCTGGGCCTTCGCGGGGGAGGGGAAGGCAATGGGG
AAGAAAGGGTTGGAGCGGGCAGCATGGAGATGGAGCAAGGAGGACGGAAC
GGAGCTCGGGGAGGGGGGGCGTCTCTCCCCTTCTATTTGGTCGGTAATGT
GCTGCACACGTTGCTCGCACCCGTGCGATACATAGCGGGCGTGGGGGAAG
GGATGGAAGGGGAGACACAGAATCCGAAGGAGGCTGCGGAGGCTTTCATC
AAAAACTACGAGAAAGAGTATCACTGCGCAGGGGTGGAGGGAGGGGGAGG
AGGGGAGGTGGAAGGAAGGGAGGGGGCGGGGGAAATCGGCGAAGGGGGAG
GCTACGCGTGGACCCCGCGGCCCCGTCCTCGATTTCTTCCCCTTTCGTTC
CAAGACGCCACCCGGCTTGCCTCCAGGGAAGGCAAGCTTCTGCTGGTCTA
CGTGCACGCCCCGCTCCACGAGCACACGCCCGCCTTTGTGCAACGCGTCT
TGAACACGGACCCGATCGTCTCCTTTCTGGACGGCAACATGTTGGTCTGG
GGGGGCTCGGTCCACTCCGCCGACGCCTGCCAGACCGCCCAGATCCTCGA
CGCCGCCGCCTTTCCCTTCATTGCTCTCGTCGCCTGTCAGCGGCACCCTC
ACCTGTCCGTCTTGGAGCACATGGAGGGGGTGACGGCAGACATAGGGCCC
GAGGCGATCCTCCAGCGGCTGACGGCGGCCATGGCCCGCCTGCAGGCGGC
AATGGAACAGCAGCAGGCCGTGGTGCGGGAACGGGAGGAACGATCCCGCC
TTCAAGCGGAACAGAACCGCGAGTACCAAGAAGCCTTGGAGGCGGACAGG
CGCCGGGAAGCCGCCTTGGTGGCGGAGAAGGCACGGGCGGTCCAGGAAGC
GGAAGCTGCCCAGAGAAGGGCAGAGGAGGAGAGGGAGGAAGAGGAAAAGA
AACGGGTGGTCTATGCCCAGTGCATCGCCGAGAAACAATCACGGCTTCCT
CCAGAGCCCGCACCTGGGTCACCTGGCGCTTTGCGGTTGCGGTTGCAGTT
CCCCCACGGGAAGAAATTGGACAGAAGGTTCCGTCCCACGGATTCCATCC
AGATCGTGAGGGATTTCATCGACGTGCAGGTGGCGGAAGAGGAGAAGGGG
GGGAAGGAGGAAGGGTGCAGGTTGGTGAACTATAGTCTGTCCACACCGTT
TCCGAAGAGGACCTTTGGCGAGGTAGGAATGACGTTGCAAGAAGTCGGAT
TGCACAGTGCCGACACAATATACATCACAGATTTGGATGCATAG

Synonyms

Publications