rna2343, rna2343 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2343
Unique Name	rna2343
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	985
Alignment location	CM002459.1:149891..151417 +

Link to JBrowse

Properties


Property Name	Value
Product	ribosome biogenesis protein bms1-like protein
Orig transcript id	gnl\|cribi\|Naga_100367g7.6892.mrna
Orig protein id	gnl\|cribi\|Naga_100367g7.6892
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:149891..151417 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100367g7	gene2238	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2343	rna2343-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28338.1	cds2335	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:149891..151417+
coding sequence from alignment at CM002459.1:149891..151417+

mRNA sequence

>rna2343 ID=rna2343|Name=rna2343|organism=Nannochloropsis gaditana|type=mRNA|length=985bp
CCAGGTGTGCTCCCCAGCGAACGAAAATTTATGACAATACACACTTTCAC
CAGCACTACGGAGGAAAATAATCGTGCTGAATCTCCTGGGGTGAAGCAAT
TCTGTAGTCGTGGAGGTTTAATTGACCATATCTACTCGAAGGGCGACCCT
CATTCCTCCTCTTATCATCCCATCCCCACTCTCCTGTTTCGATTTAGGGA
AGCAGCCAGCCCGACACCGCCGCAGAGGCACGCGTTTATTGGACATGTAT
TCTTCGGCGTCCTCAGACGATGAGGATTCCCAGCCCGAGCCTGTCGCTTC
CGCCGAACCCAAAGGGGGTGAGAACAGTAGTGAGAGCAGCGATGATGAGG
AAGAGGAGGAGGAGGAAGAGGAGGAAGGGGCGGGAGAGGAACGAAAGGAA
AGCACTAGATCGACAGACAATAACGCTAATGGCGGCATAGCAGCCTCTAA
GGAAGCCGGGATGGCGGAAGACGAGGAAAGCGAGGAGGACAGTGAAGAAA
GTAGCGAGGAGGAGGAGGATTTGCCAGTACGGAGACGGGAGGAGGTGGAG
GATGAGGACAGCGAGGACGAGGAAGAAGAGGAGGAGGAAAATGAGGAAGA
GGAGGCGTCGAATGCGTTTGCAGAGCTGCCCCAGGCCACGAAAGGCTTAC
GGGCTTGCCGAAAATGCAGGTTAATCAAGGAATTTACGCAGTTCGTGGAA
AGTGGATGCGACAACTGCATGCAGTTCGAAGACCAAGAGGAGGCAGCCGA
GTTCACCTCCCCCCACTACACGGGCATGATGGCGTTGGTGCATCCGGAGG
ATTCGTGGTCGGCGAAATGGCAAGGGGCGCGGAGGTACCGACCTGGACTC
TATGCCCTGCAGGTGGAGGGGGAGGAAGAATTCGACAGGGAGACAGAGGA
GTAGCACAAGGGAAAGGATGGAACGAATCAGGAAAGGCCCCATGGAATGG
CGTGAAAGTAAAGGATGTGAGCCGATTGTCCAGGC

protein sequence of rna2343

>rna2343-protein ID=rna2343-protein|Name=rna2343|organism=Nannochloropsis gaditana|type=polypeptide|length=248bp
MGDSTLVQDVHKGHRPRQAGAKAKKKEAHQKKKKGLSTERHNPRAFSVAN
IKRTQRNTQRNLDRAQQKEHVPLVDRTEALPPPSLVVVMGPKGCGKSTLI
RSLVKYYTRQNLSDVLGPITVVAGKAKRLTFFECPGDDLCAMLDLAKTAD
LVLLMVDGSFGFEMETFEFLNMLQTHGFPKVMGVMSHLDGLKNNKALGKT
KKRLKQRFWTEIYQGAKMFYLSGVINHKYLKGEIRNITLYISRMVGGK

mRNA from alignment at CM002459.1:149891..151417+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2343 ID=rna2343|Name=rna2343|organism=Nannochloropsis gaditana|type=mRNA|length=1527bp|location=Sequence derived from alignment at CM002459.1:149891..151417+ (Nannochloropsis gaditana)
ATGGGAGACTCTACATTGGTGCAGGATGTGCACAAAGGCCATCGACCGCG
GCAAGCGGGGGCCAAGGTAAAAGATGGAGTATTTCTCGGGGTGGGGAGTG
GGGGTTGGGGGGAGGTCAGCGCAGCCATGGAGTTGTAAGTAGCAATGTTA
TAATTTAATGACGTTGCTTACTCTTCGCATTGCAACACACaggcaaaaaa
gaaagaggcgcaccaaaagaaaaaaaaagggttgTCCACGGAGCGGCATA
ACCCCCGGGCCTTCTCAGTGGCCAATATCAAACGCACCCAACGCAATACA
CAGCGAAACCTTGACCGAGCACAGCAGTAAGTATGCCAGAGAAAAACACT
TCCCACAAACCCTACAAACACTCAAATCTCTTGTTGCCACGGCACAGAAA
AGAGCACGTCCCGCTCGTGGATCGCACCGAagccttgccccctccctccc
tcgtcgtgGTCATGGGGCCCAAGGGATGTGGAAAGTCGACCCTAATCCGT
TCCCTCGTCAAGTACTACACGCGGCAGAACCTCTCCGACGTGCTCGGTGC
GTGGGCATGAGCCAAAGAGGAGACAGTTGGCGGGGAGATGGTTCGATGGA
TCCTGTGGTCACGTTTCAATGCTGACTgctttcccatccctccccccctc
cccccctccttgcctccttccctccctcgatttctcccttttcgcacccc
ccccccctcatcACAGGGCCGATCACAGTAGTTGCAGGAAAAGCTAAGCG
GCTCACTTTCTTTGAGTGCCCGGGCGATGATCTGTGCGCCATGCTGGACC
TGGCAAAGACAGCTGACCTAGTGCTGCTGATGGTGGATGGCTCCTTTGGC
TTCGAAATGGAGACGTTTGAATTTTTAAACATGTTGCAGGTATCTTAGGA
TGGATAGAGGATGGATTTCTCTGTACACTCCTGCCATTGCATCGACTGGT
CACTTGGCTTCCGACAGCCATGCAtggttccctccccccacacactccgt
ccctccctccctccctccctccctctttctctccctgtctGTGCGCAGAC
ACACGGGTTCCCCAAAGTGATGGGTGTGATGTCCCACCTGGACGGCTTGA
AGAACAACAAGGCGCTGGGCAAGACCAAGAAGCGTCTGAAGCAACGGTTT
TGGACAGAGATCTACCAGGTAgtgagcgagggagcgagggatggagggag
ggagggagggagtgagtgagtgagtgagtgagtgagtgagtgagttaggg
agggagggaaaggggccagCGAGGCTTTTTACAAAAGTGGCTGGGATACA
TGCGTGTGCACAGAGCAAGAGGTTGCTCAATAAAGCCACactttcttcca
tttccttccttttctccctccttccctctttccttccctcccttcctcgt
tctctcgcccctccctgcgcaTCAGGGCGCGAAAATGTTTTATTTGTCGG
GGGTCATCAACCACAAGTACTTGAAGGGCGAAATCCGAAATATTACCCTC
TACATATCCCGCATGGTGGGGGGAAAG

Coding sequence (CDS) from alignment at CM002459.1:149891..151417+

>rna2343 ID=rna2343|Name=rna2343|organism=Nannochloropsis gaditana|type=CDS|length=4464bp|location=Sequence derived from alignment at CM002459.1:149891..151417+ (Nannochloropsis gaditana)
ATGGGAGACTCTACATTGGTGCAGGATGTGCACAAAGGCCATCGACCGCG
GCAAGCGGGGGCCAAGgcaaaaaagaaagaggcgcaccaaaagaaaaaaa
aagggttgTCCACGGAGCGGCATAACCCCCGGGCCTTCTCAGTGGCCAAT
ATCAAACGCACCCAACGCAATACACAGCGAAACCTTGACCGAGCACAGCA
AAAAGAGCACGTCCCGCTCGTGGATCGCACCGAagccttgccccctccct
ccctcgtcgtgGTCATGGGGCCCAAGGGATGTGGAAAGTCGACCCTAATC
CGTTCCCTCGTCAAGTACTACACGCGGCAGAACCTCTCCGACGTGCTCGG
GCCGATCACAGTAGTTGCAGGAAAAGCTAAGCGGCTCACTTTCTTTGAGT
GCCCGGGCGATGATCTGTGCGCCATGCTGGACCTGGCAAAGACAGCTGAC
CTAGTGCTGCTGATGGTGGATGGCTCCTTTGGCTTCGAAATGGAGACGTT
TGAATTTTTAAACATGTTGCAGACACACGGGTTCCCCAAAGTGATGGGTG
TGATGTCCCACCTGGACGGCTTGAAGAACAACAAGGCGCTGGGCAAGACC
AAGAAGCGTCTGAAGCAACGGTTTTGGACAGAGATCTACCAGGGCGCGAA
AATGTTTTATTTGTCGGGGGTCATCAACCACAAGTACTTGAAGGGCGAAA
TCCGAAATATTACCCTCTACATATCCCGCATGGTGGGGGGAAAGATGGGA
GACTCTACATTGGTGCAGGATGTGCACAAAGGCCATCGACCGCGGCAAGC
GGGGGCCAAGgcaaaaaagaaagaggcgcaccaaaagaaaaaaaaagggt
tgTCCACGGAGCGGCATAACCCCCGGGCCTTCTCAGTGGCCAATATCAAA
CGCACCCAACGCAATACACAGCGAAACCTTGACCGAGCACAGCAAAAAGA
GCACGTCCCGCTCGTGGATCGCACCGAagccttgccccctccctccctcg
tcgtgGTCATGGGGCCCAAGGGATGTGGAAAGTCGACCCTAATCCGTTCC
CTCGTCAAGTACTACACGCGGCAGAACCTCTCCGACGTGCTCGGGCCGAT
CACAGTAGTTGCAGGAAAAGCTAAGCGGCTCACTTTCTTTGAGTGCCCGG
GCGATGATCTGTGCGCCATGCTGGACCTGGCAAAGACAGCTGACCTAGTG
CTGCTGATGGTGGATGGCTCCTTTGGCTTCGAAATGGAGACGTTTGAATT
TTTAAACATGTTGCAGACACACGGGTTCCCCAAAGTGATGGGTGTGATGT
CCCACCTGGACGGCTTGAAGAACAACAAGGCGCTGGGCAAGACCAAGAAG
CGTCTGAAGCAACGGTTTTGGACAGAGATCTACCAGGGCGCGAAAATGTT
TTATTTGTCGGGGGTCATCAACCACAAGTACTTGAAGGGCGAAATCCGAA
ATATTACCCTCTACATATCCCGCATGGTGGGGGGAAAGATGGGAGACTCT
ACATTGGTGCAGGATGTGCACAAAGGCCATCGACCGCGGCAAGCGGGGGC
CAAGgcaaaaaagaaagaggcgcaccaaaagaaaaaaaaagggttgTCCA
CGGAGCGGCATAACCCCCGGGCCTTCTCAGTGGCCAATATCAAACGCACC
CAACGCAATACACAGCGAAACCTTGACCGAGCACAGCAAAAAGAGCACGT
CCCGCTCGTGGATCGCACCGAagccttgccccctccctccctcgtcgtgG
TCATGGGGCCCAAGGGATGTGGAAAGTCGACCCTAATCCGTTCCCTCGTC
AAGTACTACACGCGGCAGAACCTCTCCGACGTGCTCGGGCCGATCACAGT
AGTTGCAGGAAAAGCTAAGCGGCTCACTTTCTTTGAGTGCCCGGGCGATG
ATCTGTGCGCCATGCTGGACCTGGCAAAGACAGCTGACCTAGTGCTGCTG
ATGGTGGATGGCTCCTTTGGCTTCGAAATGGAGACGTTTGAATTTTTAAA
CATGTTGCAGACACACGGGTTCCCCAAAGTGATGGGTGTGATGTCCCACC
TGGACGGCTTGAAGAACAACAAGGCGCTGGGCAAGACCAAGAAGCGTCTG
AAGCAACGGTTTTGGACAGAGATCTACCAGGGCGCGAAAATGTTTTATTT
GTCGGGGGTCATCAACCACAAGTACTTGAAGGGCGAAATCCGAAATATTA
CCCTCTACATATCCCGCATGGTGGGGGGAAAGATGGGAGACTCTACATTG
GTGCAGGATGTGCACAAAGGCCATCGACCGCGGCAAGCGGGGGCCAAGgc
aaaaaagaaagaggcgcaccaaaagaaaaaaaaagggttgTCCACGGAGC
GGCATAACCCCCGGGCCTTCTCAGTGGCCAATATCAAACGCACCCAACGC
AATACACAGCGAAACCTTGACCGAGCACAGCAAAAAGAGCACGTCCCGCT
CGTGGATCGCACCGAagccttgccccctccctccctcgtcgtgGTCATGG
GGCCCAAGGGATGTGGAAAGTCGACCCTAATCCGTTCCCTCGTCAAGTAC
TACACGCGGCAGAACCTCTCCGACGTGCTCGGGCCGATCACAGTAGTTGC
AGGAAAAGCTAAGCGGCTCACTTTCTTTGAGTGCCCGGGCGATGATCTGT
GCGCCATGCTGGACCTGGCAAAGACAGCTGACCTAGTGCTGCTGATGGTG
GATGGCTCCTTTGGCTTCGAAATGGAGACGTTTGAATTTTTAAACATGTT
GCAGACACACGGGTTCCCCAAAGTGATGGGTGTGATGTCCCACCTGGACG
GCTTGAAGAACAACAAGGCGCTGGGCAAGACCAAGAAGCGTCTGAAGCAA
CGGTTTTGGACAGAGATCTACCAGGGCGCGAAAATGTTTTATTTGTCGGG
GGTCATCAACCACAAGTACTTGAAGGGCGAAATCCGAAATATTACCCTCT
ACATATCCCGCATGGTGGGGGGAAAGATGGGAGACTCTACATTGGTGCAG
GATGTGCACAAAGGCCATCGACCGCGGCAAGCGGGGGCCAAGgcaaaaaa
gaaagaggcgcaccaaaagaaaaaaaaagggttgTCCACGGAGCGGCATA
ACCCCCGGGCCTTCTCAGTGGCCAATATCAAACGCACCCAACGCAATACA
CAGCGAAACCTTGACCGAGCACAGCAAAAAGAGCACGTCCCGCTCGTGGA
TCGCACCGAagccttgccccctccctccctcgtcgtgGTCATGGGGCCCA
AGGGATGTGGAAAGTCGACCCTAATCCGTTCCCTCGTCAAGTACTACACG
CGGCAGAACCTCTCCGACGTGCTCGGGCCGATCACAGTAGTTGCAGGAAA
AGCTAAGCGGCTCACTTTCTTTGAGTGCCCGGGCGATGATCTGTGCGCCA
TGCTGGACCTGGCAAAGACAGCTGACCTAGTGCTGCTGATGGTGGATGGC
TCCTTTGGCTTCGAAATGGAGACGTTTGAATTTTTAAACATGTTGCAGAC
ACACGGGTTCCCCAAAGTGATGGGTGTGATGTCCCACCTGGACGGCTTGA
AGAACAACAAGGCGCTGGGCAAGACCAAGAAGCGTCTGAAGCAACGGTTT
TGGACAGAGATCTACCAGGGCGCGAAAATGTTTTATTTGTCGGGGGTCAT
CAACCACAAGTACTTGAAGGGCGAAATCCGAAATATTACCCTCTACATAT
CCCGCATGGTGGGGGGAAAGATGGGAGACTCTACATTGGTGCAGGATGTG
CACAAAGGCCATCGACCGCGGCAAGCGGGGGCCAAGgcaaaaaagaaaga
ggcgcaccaaaagaaaaaaaaagggttgTCCACGGAGCGGCATAACCCCC
GGGCCTTCTCAGTGGCCAATATCAAACGCACCCAACGCAATACACAGCGA
AACCTTGACCGAGCACAGCAAAAAGAGCACGTCCCGCTCGTGGATCGCAC
CGAagccttgccccctccctccctcgtcgtgGTCATGGGGCCCAAGGGAT
GTGGAAAGTCGACCCTAATCCGTTCCCTCGTCAAGTACTACACGCGGCAG
AACCTCTCCGACGTGCTCGGGCCGATCACAGTAGTTGCAGGAAAAGCTAA
GCGGCTCACTTTCTTTGAGTGCCCGGGCGATGATCTGTGCGCCATGCTGG
ACCTGGCAAAGACAGCTGACCTAGTGCTGCTGATGGTGGATGGCTCCTTT
GGCTTCGAAATGGAGACGTTTGAATTTTTAAACATGTTGCAGACACACGG
GTTCCCCAAAGTGATGGGTGTGATGTCCCACCTGGACGGCTTGAAGAACA
ACAAGGCGCTGGGCAAGACCAAGAAGCGTCTGAAGCAACGGTTTTGGACA
GAGATCTACCAGGGCGCGAAAATGTTTTATTTGTCGGGGGTCATCAACCA
CAAGTACTTGAAGGGCGAAATCCGAAATATTACCCTCTACATATCCCGCA
TGGTGGGGGGAAAG

Synonyms

Publications