EWM28338.1, cds2335 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28338.1 vs. NCBI_GenBank
Match: gi|585110691|gb|EWM28338.1| (ribosome biogenesis protein bms1-like protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 516.153 bits (1328), Expect = 0.000e+0 Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0 Query: 1 MGDSTLVQDVHKGHRPRQAGAKAKKKEAHQKKKKGLSTERHNPRAFSVANIKRTQRNTQRNLDRAQQKEHVPLVDRTEALPPPSLVVVMGPKGCGKSTLIRSLVKYYTRQNLSDVLGPITVVAGKAKRLTFFECPGDDLCAMLDLAKTADLVLLMVDGSFGFEMETFEFLNMLQTHGFPKVMGVMSHLDGLKNNKALGKTKKRLKQRFWTEIYQGAKMFYLSGVINHKYLKGEIRNITLYISRMVGGK 248 MGDSTLVQDVHKGHRPRQAGAKAKKKEAHQKKKKGLSTERHNPRAFSVANIKRTQRNTQRNLDRAQQKEHVPLVDRTEALPPPSLVVVMGPKGCGKSTLIRSLVKYYTRQNLSDVLGPITVVAGKAKRLTFFECPGDDLCAMLDLAKTADLVLLMVDGSFGFEMETFEFLNMLQTHGFPKVMGVMSHLDGLKNNKALGKTKKRLKQRFWTEIYQGAKMFYLSGVINHKYLKGEIRNITLYISRMVGGK Sbjct: 1 MGDSTLVQDVHKGHRPRQAGAKAKKKEAHQKKKKGLSTERHNPRAFSVANIKRTQRNTQRNLDRAQQKEHVPLVDRTEALPPPSLVVVMGPKGCGKSTLIRSLVKYYTRQNLSDVLGPITVVAGKAKRLTFFECPGDDLCAMLDLAKTADLVLLMVDGSFGFEMETFEFLNMLQTHGFPKVMGVMSHLDGLKNNKALGKTKKRLKQRFWTEIYQGAKMFYLSGVINHKYLKGEIRNITLYISRMVGGK 248
BLAST of EWM28338.1 vs. NCBI_GenBank
Match: gi|1173948776|gb|OQR96869.1| (ribosome biogenesis protein BMS1, partial [Thraustotheca clavata]) HSP 1 Score: 310.457 bits (794), Expect = 6.113e-101 Identity = 143/205 (69.76%), Postives = 174/205 (84.88%), Query Frame = 0 Query: 40 RHNPRAFSVANIKRTQRNTQRNLDRAQQKEHVPLVDRTEALPPPSLVVVMGPKGCGKSTLIRSLVKYYTRQNLSDVLGPITVVAGKAKRLTFFECPGDDLCAMLDLAKTADLVLLMVDGSFGFEMETFEFLNMLQTHGFPKVMGVMSHLDGLKNNKALGKTKKRLKQRFWTEIYQGAKMFYLSGVINHKYLKGEIRNITLYISRM 244 ++NP+AF V+ I + +R TQRNLD+A QKE+VPLVDRTE PPP VVVMGP G GKSTLIRSLVK YTR N+ ++ GPITV++GK +R+TFFECP +DL AM+DLAK ADLVLLMVD SFGFEMETFEFLN+LQ GFPKVMG+++HLD KNNK+L +TKKRLK RFWTEIYQGAK+FY SG++++KY KGEI N+ LYI+R+ Sbjct: 37 KNNPKAFGVSKIGKAKRMTQRNLDKAHQKEYVPLVDRTEDTPPPITVVVMGPPGSGKSTLIRSLVKRYTRHNIGEIKGPITVISGKDRRITFFECP-NDLNAMIDLAKIADLVLLMVDASFGFEMETFEFLNILQVSGFPKVMGILTHLDKFKNNKSLRQTKKRLKNRFWTEIYQGAKLFYFSGIVSNKYPKGEINNMCLYIARV 240
BLAST of EWM28338.1 vs. NCBI_GenBank
Match: gi|813175698|ref|XP_012205001.1| (hypothetical protein SPRG_09858 [Saprolegnia parasitica CBS 223.65] >gi|641530082|gb|KDO24224.1| hypothetical protein SPRG_09858 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 317.005 bits (811), Expect = 7.954e-99 Identity = 152/243 (62.55%), Postives = 188/243 (77.37%), Query Frame = 0 Query: 3 DSTLVQDVHKGHRPRQAGAKA-KKKEAHQKKKKGLSTERHNPRAFSVANIKRTQRNTQRNLDRAQQKEHVPLVDRTEALPPPSLVVVMGPKGCGKSTLIRSLVKYYTRQNLSDVLGPITVVAGKAKRLTFFECPGDDLCAMLDLAKTADLVLLMVDGSFGFEMETFEFLNMLQTHGFPKVMGVMSHLDGLKNNKALGKTKKRLKQRFWTEIYQGAKMFYLSGVINHKYLKGEIRNITLYISRM 244 D L+ K HR +GAK KKK +K + ++NP+AF V+ I + +R TQRNLD+A QKE+VP VDR E PPP VVVMGP G GKSTLIRSLVK YTR N+ ++ GP+TV++GK +R+TFFECP +DL AM+DLAK ADLVLLMVD SFGFEMETFEFLN+LQ GFPKVMG+++HLD KNNK+L +TKKRLK RFWTEIYQGAK+FY SG++++KY KGEI N+ LYI+R+ Sbjct: 2 DKDLLGKRTKQHRKSTSGAKVNKKKRNDAQKNEQAKNAKNNPKAFGVSKIGKAKRMTQRNLDKAHQKEYVPQVDRMEDTPPPVSVVVMGPPGSGKSTLIRSLVKRYTRHNIGEIKGPVTVISGKDRRITFFECP-NDLNAMIDLAKIADLVLLMVDASFGFEMETFEFLNILQVSGFPKVMGILTHLDKFKNNKSLRQTKKRLKSRFWTEIYQGAKLFYFSGIVSNKYPKGEINNMMLYIARI 243
BLAST of EWM28338.1 vs. NCBI_GenBank
Match: gi|1173942678|gb|OQR91640.1| (ribosome biogenesis protein BMS1 [Achlya hypogyna]) HSP 1 Score: 319.316 bits (817), Expect = 3.806e-98 Identity = 153/243 (62.96%), Postives = 191/243 (78.60%), Query Frame = 0 Query: 3 DSTLVQDVHKGHRPRQAGAKA-KKKEAHQKKKKGLSTERHNPRAFSVANIKRTQRNTQRNLDRAQQKEHVPLVDRTEALPPPSLVVVMGPKGCGKSTLIRSLVKYYTRQNLSDVLGPITVVAGKAKRLTFFECPGDDLCAMLDLAKTADLVLLMVDGSFGFEMETFEFLNMLQTHGFPKVMGVMSHLDGLKNNKALGKTKKRLKQRFWTEIYQGAKMFYLSGVINHKYLKGEIRNITLYISRM 244 D L+ K HR ++GAK KKK + +K + ++NP+AF V+ I + +R TQRNLD+A QKE+VP VDR E PPP VVVMGP G GKSTLIRSLVK YTR N+ ++ GP+TV++GK +R+TFFECP +DL AM+DLAK ADLVLLMVD SFGFEMETFEFLN+LQ GFPKVMG+++HLD KNNK+L +TKKRLK RFWTEIYQGAK+FY SG++++KY KGEI N+TLYI+R+ Sbjct: 2 DKDLLGKGSKQHRKSKSGAKVNKKKRSDAQKNEQAKNAKNNPKAFGVSKIGKAKRMTQRNLDKAHQKEYVPQVDRMEDTPPPVSVVVMGPPGSGKSTLIRSLVKRYTRHNIGEIKGPVTVISGKDRRITFFECP-NDLNAMIDLAKIADLVLLMVDASFGFEMETFEFLNILQVSGFPKVMGILTHLDKFKNNKSLRQTKKRLKNRFWTEIYQGAKLFYFSGIVSNKYPKGEINNMTLYIARV 243
BLAST of EWM28338.1 vs. NCBI_GenBank
Match: gi|301120051|ref|XP_002907753.1| (ribosome biogenesis protein BMS1 [Phytophthora infestans T30-4] >gi|262106265|gb|EEY64317.1| ribosome biogenesis protein BMS1 [Phytophthora infestans T30-4]) HSP 1 Score: 319.316 bits (817), Expect = 6.518e-98 Identity = 156/238 (65.55%), Postives = 191/238 (80.25%), Query Frame = 0 Query: 12 KGHRPRQAGAKA--KKKEAHQKKKK---GLSTERHNPRAFSVANIKRTQRNTQRNLDRAQQKEHVPLVDRTEALPPPSLVVVMGPKGCGKSTLIRSLVKYYTRQNLSDVLGPITVVAGKAKRLTFFECPGDDLCAMLDLAKTADLVLLMVDGSFGFEMETFEFLNMLQTHGFPKVMGVMSHLDGLKNNKALGKTKKRLKQRFWTEIYQGAKMFYLSGVINHKYLKGEIRNITLYISRM 244 KGHR ++GAK +K++A +K+KK L+ +R NP+AF VA R ++ QRNLDRA +KE+VP +R E LPPP VVVMGP G GKST+IRSLVK YTR NL +V GP+TVV+GK +R+TFFECP +DL AM+DLAK ADLVLL+VD SFGFEMETFEFLN+LQ GFPKVMG+++HLDG K NK+L KTKKRLK RFWTEIYQGAK+FY SG+ +KY KGEI+N++LYISRM Sbjct: 8 KGHRKSKSGAKVNKQKRKAFEKQKKEQPSLAEQRKNPKAFGVAKAGRARKTIQRNLDRAHRKEYVPQSNRAEELPPPISVVVMGPPGSGKSTVIRSLVKRYTRHNLVEVKGPVTVVSGKDRRITFFECP-NDLNAMIDLAKIADLVLLLVDASFGFEMETFEFLNILQVVGFPKVMGILTHLDGFKKNKSLRKTKKRLKARFWTEIYQGAKLFYFSGISANKYPKGEIQNLSLYISRM 244
BLAST of EWM28338.1 vs. NCBI_GenBank
Match: gi|570319900|gb|ETO67848.1| (arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica P1976]) HSP 1 Score: 317.39 bits (812), Expect = 3.716e-97 Identity = 155/238 (65.13%), Postives = 190/238 (79.83%), Query Frame = 0 Query: 12 KGHRPRQAGAKA--KKKEAHQKKKK---GLSTERHNPRAFSVANIKRTQRNTQRNLDRAQQKEHVPLVDRTEALPPPSLVVVMGPKGCGKSTLIRSLVKYYTRQNLSDVLGPITVVAGKAKRLTFFECPGDDLCAMLDLAKTADLVLLMVDGSFGFEMETFEFLNMLQTHGFPKVMGVMSHLDGLKNNKALGKTKKRLKQRFWTEIYQGAKMFYLSGVINHKYLKGEIRNITLYISRM 244 KGHR ++GAK +K++A +K+KK L+ +R NP+AF VA R ++ QRNLDRA +KE+VP ++R E LPPP VVVMGP G GKST+IRSLVK YTR NL +V GP+TVV+GK +R+TFFECP +DL AM+DLAK ADLVLL+VD SFGFEMETFEFLN+LQ GFPKVMG+++HLD K NK+L KTKKRLK RFWTEIYQGAK+FY SG+ +KY KGEI N++LYISRM Sbjct: 8 KGHRKSKSGAKVNKQKRKAFEKQKKEQPSLAEQRKNPKAFGVAKAGRARKTIQRNLDRAHRKEYVPQLNRAEELPPPISVVVMGPPGSGKSTVIRSLVKRYTRHNLVEVKGPVTVVSGKDRRITFFECP-NDLNAMIDLAKIADLVLLLVDASFGFEMETFEFLNILQVVGFPKVMGILTHLDSFKKNKSLRKTKKRLKARFWTEIYQGAKLFYFSGISANKYPKGEIHNLSLYISRM 244
BLAST of EWM28338.1 vs. NCBI_GenBank
Match: gi|675204289|ref|XP_008911029.1| (arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica INRA-310] >gi|567953661|gb|ETK79308.1| arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica] >gi|567982297|gb|ETL32719.1| arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica] >gi|568011809|gb|ETL85987.1| arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica] >gi|568088948|gb|ETN03802.1| arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica INRA-310] >gi|570943754|gb|ETP09011.1| arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 317.005 bits (811), Expect = 4.118e-97 Identity = 155/238 (65.13%), Postives = 190/238 (79.83%), Query Frame = 0 Query: 12 KGHRPRQAGAKA--KKKEAHQKKKK---GLSTERHNPRAFSVANIKRTQRNTQRNLDRAQQKEHVPLVDRTEALPPPSLVVVMGPKGCGKSTLIRSLVKYYTRQNLSDVLGPITVVAGKAKRLTFFECPGDDLCAMLDLAKTADLVLLMVDGSFGFEMETFEFLNMLQTHGFPKVMGVMSHLDGLKNNKALGKTKKRLKQRFWTEIYQGAKMFYLSGVINHKYLKGEIRNITLYISRM 244 KGHR ++GAK +K++A +K+KK L+ +R NP+AF VA R ++ QRNLDRA +KE+VP ++R E LPPP VVVMGP G GKST+IRSLVK YTR NL +V GP+TVV+GK +R+TFFECP +DL AM+DLAK ADLVLL+VD SFGFEMETFEFLN+LQ GFPKVMG+++HLD K NK+L KTKKRLK RFWTEIYQGAK+FY SG+ +KY KGEI N++LYISRM Sbjct: 8 KGHRKSKSGAKVNKQKRKAFEKQKKEQPSLAEQRKNPKAFGVAKAGRARKTIQRNLDRAHRKEYVPQLNRAEELPPPISVVVMGPPGSGKSTVIRSLVKRYTRHNLVEVKGPVTVVSGKDRRITFFECP-NDLNAMIDLAKIADLVLLLVDASFGFEMETFEFLNILQVVGFPKVMGILTHLDSFKKNKSLRKTKKRLKARFWTEIYQGAKLFYFSGISANKYPKGEIHNLSLYISRM 244
BLAST of EWM28338.1 vs. NCBI_GenBank
Match: gi|566016185|gb|ETI39096.1| (arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica P1569] >gi|568041767|gb|ETM39143.1| arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica]) HSP 1 Score: 317.005 bits (811), Expect = 5.108e-97 Identity = 155/238 (65.13%), Postives = 190/238 (79.83%), Query Frame = 0 Query: 12 KGHRPRQAGAKA--KKKEAHQKKKK---GLSTERHNPRAFSVANIKRTQRNTQRNLDRAQQKEHVPLVDRTEALPPPSLVVVMGPKGCGKSTLIRSLVKYYTRQNLSDVLGPITVVAGKAKRLTFFECPGDDLCAMLDLAKTADLVLLMVDGSFGFEMETFEFLNMLQTHGFPKVMGVMSHLDGLKNNKALGKTKKRLKQRFWTEIYQGAKMFYLSGVINHKYLKGEIRNITLYISRM 244 KGHR ++GAK +K++A +K+KK L+ +R NP+AF VA R ++ QRNLDRA +KE+VP ++R E LPPP VVVMGP G GKST+IRSLVK YTR NL +V GP+TVV+GK +R+TFFECP +DL AM+DLAK ADLVLL+VD SFGFEMETFEFLN+LQ GFPKVMG+++HLD K NK+L KTKKRLK RFWTEIYQGAK+FY SG+ +KY KGEI N++LYISRM Sbjct: 8 KGHRKSKSGAKVNKQKRKAFEKQKKEQPSLAQQRKNPKAFGVAKAGRARKTIQRNLDRAHRKEYVPQLNRAEELPPPISVVVMGPPGSGKSTVIRSLVKRYTRHNLVEVKGPVTVVSGKDRRITFFECP-NDLNAMIDLAKIADLVLLLVDASFGFEMETFEFLNILQVVGFPKVMGILTHLDSFKKNKSLRKTKKRLKARFWTEIYQGAKLFYFSGISANKYPKGEIHNLSLYISRM 244
BLAST of EWM28338.1 vs. NCBI_GenBank
Match: gi|570974773|gb|ETP37041.1| (arf-GAP with GTPase, ANK repeat and PH domain-containing protein 9 [Phytophthora parasitica P10297]) HSP 1 Score: 316.62 bits (810), Expect = 5.489e-97 Identity = 155/238 (65.13%), Postives = 190/238 (79.83%), Query Frame = 0 Query: 12 KGHRPRQAGAKA--KKKEAHQKKKK---GLSTERHNPRAFSVANIKRTQRNTQRNLDRAQQKEHVPLVDRTEALPPPSLVVVMGPKGCGKSTLIRSLVKYYTRQNLSDVLGPITVVAGKAKRLTFFECPGDDLCAMLDLAKTADLVLLMVDGSFGFEMETFEFLNMLQTHGFPKVMGVMSHLDGLKNNKALGKTKKRLKQRFWTEIYQGAKMFYLSGVINHKYLKGEIRNITLYISRM 244 KGHR ++GAK +K++A +K+KK L+ +R NP+AF VA R ++ QRNLDRA +KE+VP ++R E LPPP VVVMGP G GKST+IRSLVK YTR NL +V GP+TVV+GK +R+TFFECP +DL AM+DLAK ADLVLL+VD SFGFEMETFEFLN+LQ GFPKVMG+++HLD K NK+L KTKKRLK RFWTEIYQGAK+FY SG+ +KY KGEI N++LYISRM Sbjct: 8 KGHRKSKSGAKVNKQKRKAFEKQKKEQPSLAQQRKNPKAFGVAKAGRARKTIQRNLDRAHRKEYVPQLNRAEELPPPISVVVMGPPGSGKSTVIRSLVKRYTRHNLVEVKGPVTVVSGKDRRITFFECP-NDLNAMIDLAKIADLVLLLVDASFGFEMETFEFLNILQVVGFPKVMGILTHLDSFKKNKSLRKTKKRLKARFWTEIYQGAKLFYFSGISANKYPKGEIHNLSLYISRM 244
BLAST of EWM28338.1 vs. NCBI_GenBank
Match: gi|953487305|emb|CEG49367.1| (arf-gap with ank repeat and ph domain-containing protein 9 [Plasmopara halstedii]) HSP 1 Score: 316.62 bits (810), Expect = 7.788e-97 Identity = 155/238 (65.13%), Postives = 188/238 (78.99%), Query Frame = 0 Query: 12 KGHRPRQAGAKAKK--KEAHQKKKK---GLSTERHNPRAFSVANIKRTQRNTQRNLDRAQQKEHVPLVDRTEALPPPSLVVVMGPKGCGKSTLIRSLVKYYTRQNLSDVLGPITVVAGKAKRLTFFECPGDDLCAMLDLAKTADLVLLMVDGSFGFEMETFEFLNMLQTHGFPKVMGVMSHLDGLKNNKALGKTKKRLKQRFWTEIYQGAKMFYLSGVINHKYLKGEIRNITLYISRM 244 KGHR ++GAK K ++A +K+K+ L+ +R NP+AF VA R ++ QRNLDRA +KE+VP +R E LPPP VVVMGP G GKST+IRSLVK YTR NL DV GPITVV+GK +R+TFFECP +DL AM+DLAK ADLVLL++D SFGFEMETFEFLN+LQ GFPKVMG+++HLD NK+L KTKKRLK RFWTEIYQGAK+FY SGV +KY KGEI+N++LYISRM Sbjct: 9 KGHRKSKSGAKVNKHKRKAFEKQKREQPSLAEQRKNPKAFGVAKAGRARKTVQRNLDRAHRKEYVPQQNRAEDLPPPISVVVMGPPGSGKSTVIRSLVKRYTRHNLVDVKGPITVVSGKDRRITFFECP-NDLNAMIDLAKIADLVLLLIDASFGFEMETFEFLNILQVVGFPKVMGILTHLDSFTKNKSLRKTKKRLKARFWTEIYQGAKLFYFSGVSANKYPKGEIQNLSLYISRM 245 The following BLAST results are available for this feature:
BLAST of EWM28338.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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