rna2342, rna2342 (mRNA) Nannochloropsis gaditana

Overview
Namerna2342
Unique Namerna2342
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1691
Alignment locationCM002459.1:148570..149554 -

Link to JBrowse

Properties
Property NameValue
Producttranscription elongation factor spt4
Orig transcript idgnl|cribi|Naga_100367g6.6896.mrna
Orig protein idgnl|cribi|Naga_100367g6.6896
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:148570..149554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100367g6gene2237Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28342.1cds2334Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2342rna2342-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2342 ID=rna2342|Name=rna2342|organism=Nannochloropsis gaditana|type=mRNA|length=1691bp
CGTCCGCTTTACCCGCTGGCGGTGAATGCGATAGGGAGGGTGTTTGAAGT
AAAGCAGAGGACACGACATGTGGTATCAAGCGCATTTTTAATCGCGTAAG
GATGAGTGAAGAAAAGTTTATTGAATTTATATGGTAACATGCGATAACTT
GTTGTGTATGAATAGACGCACTCATTATTGTGTATTGCATGTCATCGTGC
TTGTCCGAAGCTTTGTATTACGGTCGAAGCTGAACGGACCTCAATCCTGT
GTCCTGGTCTTTGACTTCAATCATTTTCAAATCGAGCATTTTCTCCGCAT
AAACAACAGTCTCCCTCTGCATGTTGCCAGACGAAAAGCCGCTTGACTGA
GTCGAGCGTCTCGAAATATGTCCTGCTCCCTCCCACAACGTCTATGGAAA
CTTGAGCCATGGGGCTATCCTGCTCGGTCGCACTTCGCAGTCACTCATTT
GAAATTCCCCGTCGCCTCTGGTAAATATGGCCTCAGCTTATACCACATCG
CGTTGACGTATCGCCTCGTTTTCCTTTTGTATTGGTCATTTTGGGTACTC
TATTCCGCCTTGGGCGGGGACGGTCCGCCTACAAGCTGGTGGTGTGTCTA
CGTGACTAACTGGACGGCAGCAGTGATGGGTGGGTACGCCTGGGGTGCAT
TTCTGGCCATCTTGATCCCTCGCGCATTCTTCTTGGACCGGGCGACTTGG
TTTCTTCACGACATTGCCACACCTTTGTCGATTATGGTGTGCCTCATGTA
CTGGTTGGCGTTTCCCGTTCCGCCCATTTCTGGCATTATTGTGCATCTTC
ATGGGGTCAACGCCCTTCTCATGGTGATGGACCTGGCTCTTGCGCGATAC
CCATACCATCTCAAACATTTCCTCCCTGCGTGCGGCTTTATGGCGTGCTA
CGTCGTTTTCAACGGGGTGTACTGGCGAGCGGCAGGTAACGTGGTGTACA
CTCCCTTGGATTACACTCACCCCTTCTTGGCGGCAACCGCCCTCGTCGGC
ACCTTTTTCATTATTTTCCCCATCGTCCACTTGCTGTGTTGGCGGTGGGA
ACTGGCCTGTTTTGCGTGGAGCGAGCGGAGACGCCGCAACCTCCTGGGGG
GGGGGAACCGAAAAAGGCCGCTGCTCAGTTCTTATGCCCGACGGGATCGG
GAGTCAAGCCGGGGAGAGGGGAGAGCAGAAGACGGAGTGGAGCAGGGCTT
GGAGTCACAGGATGGGGGAGATGCTTGTAATGGGCGGGGAGGGACCAACG
GGGGGGGGACGGGAGGGAAGGAGGGGGAGGCGATAGGTCTGACCGACGCC
GTGTTGGCGATGCGGGATGTCTTACTACTGGGAGAGCGAGGGGTAGGGGA
GAGGAGGTGGGAAGGTCAGGGTGAAGGCGTGGATAGGGAGGAAGAAGGTA
AAGTGGCTGGGTCGATGTAGGAATGCAGCTGTCATCTTTTGTGAGAAAGA
TGACCCTTGCTCGGTTTAAATATTTGAAATGTGATCGAGCAGTTGGCATG
CTGAACGGGCATTATGGCACGACTTTTGTAAACAAAGAAATTGGTGAGTC
CGCAAGGAAAGAGGTAAGGCCGAGCGCACTGTTAATGCGGCTGCCCTTCC
ATATAACAACATGCTCGGACTCAGATGACGCCGATACAACTCCGCGATCG
CCTGGACAATCGGCTCACATCCTTTACTTTCACGCCATTCC
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protein sequence of rna2342

>rna2342-protein ID=rna2342-protein|Name=rna2342|organism=Nannochloropsis gaditana|type=polypeptide|length=219bp
MYSSASSDDEDSQPEPVASAEPKGGENSSESSDDEEEEEEEEEEGAGEER
KESTRSTDNNANGGIAASKEAGMAEDEESEEDSEESSEEEEDLPVRRREE
VEDEDSEDEEEEEEENEEEEASNAFAELPQATKGLRACRKCRLIKEFTQF
VESGCDNCMQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRP
GLYALQVEGEEEFDRETEE
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mRNA from alignment at CM002459.1:148570..149554-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2342 ID=rna2342|Name=rna2342|organism=Nannochloropsis gaditana|type=mRNA|length=985bp|location=Sequence derived from alignment at CM002459.1:148570..149554- (Nannochloropsis gaditana)
CCAGGTGTGCTCCCCAGCGAACGAAAATTTATGACAATACACACTTTCAC
CAGCACTACGGAGGAAAATAATCGTGCTGAATCTCCTGGGGTGAAGCAAT
TCTGTAGTCGTGGAGGTTTAATTGACCATATCTACTCGAAGGGCGACCCT
CATTCCTCCTCTTATCATCCCATCCCCACTCTCCTGTTTCGATTTAGGGA
AGCAGCCAGCCCGACACCGCCGCAGAGGCACGCGTTTATTGGACATGTAT
TCTTCGGCGTCCTCAGACGATGAGGATTCCCAGCCCGAGCCTGTCGCTTC
CGCCGAACCCAAAGGGGGTGAGAACAGTAGTGAGAGCAGCGATGATGAGG
AAGAGGAGGAGGAGGAAGAGGAGGAAGGGGCGGGAGAGGAACGAAAGGAA
AGCACTAGATCGACAGACAATAACGCTAATGGCGGCATAGCAGCCTCTAA
GGAAGCCGGGATGGCGGAAGACGAGGAAAGCGAGGAGGACAGTGAAGAAA
GTAGCGAGGAGGAGGAGGATTTGCCAGTACGGAGACGGGAGGAGGTGGAG
GATGAGGACAGCGAGGACGAGGAAGAAGAGGAGGAGGAAAATGAGGAAGA
GGAGGCGTCGAATGCGTTTGCAGAGCTGCCCCAGGCCACGAAAGGCTTAC
GGGCTTGCCGAAAATGCAGGTTAATCAAGGAATTTACGCAGTTCGTGGAA
AGTGGATGCGACAACTGCATGCAGTTCGAAGACCAAGAGGAGGCAGCCGA
GTTCACCTCCCCCCACTACACGGGCATGATGGCGTTGGTGCATCCGGAGG
ATTCGTGGTCGGCGAAATGGCAAGGGGCGCGGAGGTACCGACCTGGACTC
TATGCCCTGCAGGTGGAGGGGGAGGAAGAATTCGACAGGGAGACAGAGGA
GTAGCACAAGGGAAAGGATGGAACGAATCAGGAAAGGCCCCATGGAATGG
CGTGAAAGTAAAGGATGTGAGCCGATTGTCCAGGC
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Coding sequence (CDS) from alignment at CM002459.1:148570..149554-

>rna2342 ID=rna2342|Name=rna2342|organism=Nannochloropsis gaditana|type=CDS|length=660bp|location=Sequence derived from alignment at CM002459.1:148570..149554- (Nannochloropsis gaditana)
ATGTATTCTTCGGCGTCCTCAGACGATGAGGATTCCCAGCCCGAGCCTGT
CGCTTCCGCCGAACCCAAAGGGGGTGAGAACAGTAGTGAGAGCAGCGATG
ATGAGGAAGAGGAGGAGGAGGAAGAGGAGGAAGGGGCGGGAGAGGAACGA
AAGGAAAGCACTAGATCGACAGACAATAACGCTAATGGCGGCATAGCAGC
CTCTAAGGAAGCCGGGATGGCGGAAGACGAGGAAAGCGAGGAGGACAGTG
AAGAAAGTAGCGAGGAGGAGGAGGATTTGCCAGTACGGAGACGGGAGGAG
GTGGAGGATGAGGACAGCGAGGACGAGGAAGAAGAGGAGGAGGAAAATGA
GGAAGAGGAGGCGTCGAATGCGTTTGCAGAGCTGCCCCAGGCCACGAAAG
GCTTACGGGCTTGCCGAAAATGCAGGTTAATCAAGGAATTTACGCAGTTC
GTGGAAAGTGGATGCGACAACTGCATGCAGTTCGAAGACCAAGAGGAGGC
AGCCGAGTTCACCTCCCCCCACTACACGGGCATGATGGCGTTGGTGCATC
CGGAGGATTCGTGGTCGGCGAAATGGCAAGGGGCGCGGAGGTACCGACCT
GGACTCTATGCCCTGCAGGTGGAGGGGGAGGAAGAATTCGACAGGGAGAC
AGAGGAGTAG
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Synonyms
Publications