EWM28342.1, cds2334 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|585110695|gb|EWM28342.1| (transcription elongation factor spt4 [Nannochloropsis gaditana]) HSP 1 Score: 423.32 bits (1087), Expect = 1.631e-149 Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0
Query: 1 MYSSASSDDEDSQPEPVASAEPKGGENSSESSDDEEEEEEEEEEGAGEERKESTRSTDNNANGGIAASKEAGMAEDEESEEDSEESSEEEEDLPVRRREEVEDEDSEDEEEEEEENEEEEASNAFAELPQATKGLRACRKCRLIKEFTQFVESGCDNCMQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGEEEFDRETEE 219
MYSSASSDDEDSQPEPVASAEPKGGENSSESSDDEEEEEEEEEEGAGEERKESTRSTDNNANGGIAASKEAGMAEDEESEEDSEESSEEEEDLPVRRREEVEDEDSEDEEEEEEENEEEEASNAFAELPQATKGLRACRKCRLIKEFTQFVESGCDNCMQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGEEEFDRETEE
Sbjct: 1 MYSSASSDDEDSQPEPVASAEPKGGENSSESSDDEEEEEEEEEEGAGEERKESTRSTDNNANGGIAASKEAGMAEDEESEEDSEESSEEEEDLPVRRREEVEDEDSEDEEEEEEENEEEEASNAFAELPQATKGLRACRKCRLIKEFTQFVESGCDNCMQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGEEEFDRETEE 219
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|635371895|emb|CCI39857.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 99.3673 bits (246), Expect = 3.778e-23 Identity = 47/101 (46.53%), Postives = 68/101 (67.33%), Query Frame = 0
Query: 113 EEENEEEEASNAFAELPQATKGLRACRKCRLIKEFTQFVESGCDNC--MQFED-QEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGE 210
++E+E E+A A++P + LRAC C L+K FTQF ++GC+NC +Q D ++ AE T+ HY GM+AL+ P++SW AKWQ R PG+YA+ V GE
Sbjct: 4 DDEDELEDAI-IHADIPNTFRELRACLTCSLVKTFTQFYDTGCENCAFLQMADNRQRVAECTTAHYDGMIALMRPKESWVAKWQRLVRMVPGIYAVSVTGE 103
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|1214702228|gb|OWZ14457.1| (Transcription elongation factor SPT4 [Phytophthora megakarya]) HSP 1 Score: 94.7449 bits (234), Expect = 2.011e-21 Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 0
Query: 126 AELPQATKGLRACRKCRLIKEFTQFVESGCDNC--MQFED-QEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGE 210
A++P + LRAC C LIK FTQF ++GC+NC +Q D ++ AE TS ++ GM+A++ P++SW AKWQ R PG+YA+ V GE
Sbjct: 19 ADIPNTFRELRACMTCSLIKTFTQFYDTGCENCNFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRIVRLVPGIYAVSVSGE 106
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|695387368|ref|XP_009518860.1| (putative transcription protein [Phytophthora sojae] >gi|348683757|gb|EGZ23572.1| putative transcription protein [Phytophthora sojae]) HSP 1 Score: 94.7449 bits (234), Expect = 2.076e-21 Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 0
Query: 126 AELPQATKGLRACRKCRLIKEFTQFVESGCDNC--MQFED-QEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGE 210
A++P + LRAC C LIK FTQF ++GC+NC +Q D ++ AE TS ++ GM+A++ P++SW AKWQ R PG+YA+ V GE
Sbjct: 19 ADIPNTFRELRACMTCSLIKTFTQFYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRIVRLIPGIYAVSVSGE 106
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|675167069|ref|XP_008892419.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566026428|gb|ETI49339.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567963736|gb|ETK89229.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567992450|gb|ETL42640.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568021727|gb|ETL95810.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568052115|gb|ETM48998.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568108602|gb|ETN23226.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570330120|gb|ETO78068.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570953849|gb|ETP19106.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570988742|gb|ETP47055.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|970662896|gb|KUG00210.1| Transcription elongation factor SPT4 [Phytophthora nicotianae]) HSP 1 Score: 94.7449 bits (234), Expect = 2.099e-21 Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 0
Query: 126 AELPQATKGLRACRKCRLIKEFTQFVESGCDNC--MQFED-QEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGE 210
A++P + LRAC C LIK FTQF ++GC+NC +Q D ++ AE TS ++ GM+A++ P++SW AKWQ R PG+YA+ V GE
Sbjct: 19 ADIPNTFRELRACMTCSLIKTFTQFYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRIVRLIPGIYAVSVSGE 106
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|301115087|ref|XP_002999313.1| (transcription elongation factor SPT4 [Phytophthora infestans T30-4] >gi|262111407|gb|EEY69459.1| transcription elongation factor SPT4 [Phytophthora infestans T30-4]) HSP 1 Score: 93.9745 bits (232), Expect = 4.253e-21 Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 0
Query: 126 AELPQATKGLRACRKCRLIKEFTQFVESGCDNC--MQFED-QEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGE 210
A++P + LRAC C L+K FTQF ++GC+NC +Q D ++ AE TS ++ GM+A++ P++SW AKWQ R PG+YA+ V GE
Sbjct: 19 ADIPNTFRELRACMTCSLVKTFTQFYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRIVRLIPGIYAVSVSGE 106
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|1173960948|gb|OQS07029.1| (transcription elongation factor SPT4 [Thraustotheca clavata]) HSP 1 Score: 92.8189 bits (229), Expect = 9.308e-21 Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 0
Query: 118 EEEASNAFAELPQATKGLRACRKCRLIKEFTQFVESGCDNCMQF---EDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGE 210
+E+A AE+P + LRAC C L+K ++QF ESGCDNC ++++ + T+ ++ GM+A++ P +SW AKW+ R+ PG+YA+ V GE
Sbjct: 7 DEDAGPVHAEIPTTFRELRACMVCSLVKTYSQFYESGCDNCTVLNMQDNRQRVTDCTTAYFEGMIAMMQPRESWVAKWRRIGRHVPGIYAVSVTGE 102
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|953497000|emb|CEG41309.1| (transcription elongation factor spt4 [Plasmopara halstedii]) HSP 1 Score: 92.8189 bits (229), Expect = 1.056e-20 Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 0
Query: 126 AELPQATKGLRACRKCRLIKEFTQFVESGCDNC--MQFED-QEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGE 210
A++P + LRAC C L+K FTQF ++GC+NC +Q D ++ AE TS ++ GM+A++ P++SW AKWQ R PG+YA+ V GE
Sbjct: 19 ADIPNTFRELRACMTCSLVKTFTQFYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRIVRSIPGIYAVSVSGE 106
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|298713246|emb|CBJ33539.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 93.2041 bits (230), Expect = 1.223e-20 Identity = 47/106 (44.34%), Postives = 68/106 (64.15%), Query Frame = 0
Query: 108 DEEEEEEENEEEEASNAFAELPQATKGLRACRKCRLIKEFTQFVESGCDNC--MQFE-DQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGE 210
D + EEE +E A AE+P + KGLRAC++C L+K QFV GC+NC +Q E DQ + T+ +++G++A++ PE SW KWQ RPG+YA++V GE
Sbjct: 8 DGLDLEEEGLDEFAG---AEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPESSWVGKWQRISECRPGMYAIEVVGE 110
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|669165204|ref|XP_008618164.1| (hypothetical protein SDRG_13844 [Saprolegnia diclina VS20] >gi|813198554|ref|XP_012208860.1| hypothetical protein SPRG_14342 [Saprolegnia parasitica CBS 223.65] >gi|813225718|ref|XP_012211936.1| hypothetical protein SPRG_17218 [Saprolegnia parasitica CBS 223.65] >gi|530730274|gb|EQC28516.1| hypothetical protein SDRG_13844 [Saprolegnia diclina VS20] >gi|641521945|gb|KDO17354.1| hypothetical protein SPRG_17218 [Saprolegnia parasitica CBS 223.65] >gi|641526003|gb|KDO20403.1| hypothetical protein SPRG_14342 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 92.4337 bits (228), Expect = 1.694e-20 Identity = 39/89 (43.82%), Postives = 60/89 (67.42%), Query Frame = 0
Query: 126 AELPQATKGLRACRKCRLIKEFTQFVESGCDNC----MQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGE 210
AE+P + LRAC C L+K ++QF ESGCDNC MQ ++++ + T+ ++ GM+A++ P +SW AKW+ R+ PG+YA+ V GE
Sbjct: 15 AEIPTTFRELRACMICSLVKTYSQFYESGCDNCAVLNMQ-DNRQRVTDCTTAYFEGMIAMMQPRESWVAKWRRIGRFVPGIYAVSVTGE 102 The following BLAST results are available for this feature:
BLAST of EWM28342.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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