EWM28342.1, cds2334 (CDS) Nannochloropsis gaditana

Overview
NameEWM28342.1
Unique Namecds2334
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:148651..149310 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28342.1
Producttranscription elongation factor spt4
Orig transcript idgnl|cribi|Naga_100367g6.6896.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:148651..149310 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR029040RPABC4/Spt4
IPR016046Spt4-like
IPR022800Spt4/RpoE2_Znf
Homology
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|585110695|gb|EWM28342.1| (transcription elongation factor spt4 [Nannochloropsis gaditana])

HSP 1 Score: 423.32 bits (1087), Expect = 1.631e-149
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 0
Query:    1 MYSSASSDDEDSQPEPVASAEPKGGENSSESSDDEEEEEEEEEEGAGEERKESTRSTDNNANGGIAASKEAGMAEDEESEEDSEESSEEEEDLPVRRREEVEDEDSEDEEEEEEENEEEEASNAFAELPQATKGLRACRKCRLIKEFTQFVESGCDNCMQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGEEEFDRETEE 219
            MYSSASSDDEDSQPEPVASAEPKGGENSSESSDDEEEEEEEEEEGAGEERKESTRSTDNNANGGIAASKEAGMAEDEESEEDSEESSEEEEDLPVRRREEVEDEDSEDEEEEEEENEEEEASNAFAELPQATKGLRACRKCRLIKEFTQFVESGCDNCMQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGEEEFDRETEE
Sbjct:    1 MYSSASSDDEDSQPEPVASAEPKGGENSSESSDDEEEEEEEEEEGAGEERKESTRSTDNNANGGIAASKEAGMAEDEESEEDSEESSEEEEDLPVRRREEVEDEDSEDEEEEEEENEEEEASNAFAELPQATKGLRACRKCRLIKEFTQFVESGCDNCMQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGEEEFDRETEE 219          
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|635371895|emb|CCI39857.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 99.3673 bits (246), Expect = 3.778e-23
Identity = 47/101 (46.53%), Postives = 68/101 (67.33%), Query Frame = 0
Query:  113 EEENEEEEASNAFAELPQATKGLRACRKCRLIKEFTQFVESGCDNC--MQFED-QEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGE 210
            ++E+E E+A    A++P   + LRAC  C L+K FTQF ++GC+NC  +Q  D ++  AE T+ HY GM+AL+ P++SW AKWQ   R  PG+YA+ V GE
Sbjct:    4 DDEDELEDAI-IHADIPNTFRELRACLTCSLVKTFTQFYDTGCENCAFLQMADNRQRVAECTTAHYDGMIALMRPKESWVAKWQRLVRMVPGIYAVSVTGE 103          
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|1214702228|gb|OWZ14457.1| (Transcription elongation factor SPT4 [Phytophthora megakarya])

HSP 1 Score: 94.7449 bits (234), Expect = 2.011e-21
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 0
Query:  126 AELPQATKGLRACRKCRLIKEFTQFVESGCDNC--MQFED-QEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGE 210
            A++P   + LRAC  C LIK FTQF ++GC+NC  +Q  D ++  AE TS ++ GM+A++ P++SW AKWQ   R  PG+YA+ V GE
Sbjct:   19 ADIPNTFRELRACMTCSLIKTFTQFYDTGCENCNFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRIVRLVPGIYAVSVSGE 106          
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|695387368|ref|XP_009518860.1| (putative transcription protein [Phytophthora sojae] >gi|348683757|gb|EGZ23572.1| putative transcription protein [Phytophthora sojae])

HSP 1 Score: 94.7449 bits (234), Expect = 2.076e-21
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 0
Query:  126 AELPQATKGLRACRKCRLIKEFTQFVESGCDNC--MQFED-QEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGE 210
            A++P   + LRAC  C LIK FTQF ++GC+NC  +Q  D ++  AE TS ++ GM+A++ P++SW AKWQ   R  PG+YA+ V GE
Sbjct:   19 ADIPNTFRELRACMTCSLIKTFTQFYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRIVRLIPGIYAVSVSGE 106          
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|675167069|ref|XP_008892419.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566026428|gb|ETI49339.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567963736|gb|ETK89229.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567992450|gb|ETL42640.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568021727|gb|ETL95810.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568052115|gb|ETM48998.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568108602|gb|ETN23226.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570330120|gb|ETO78068.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570953849|gb|ETP19106.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570988742|gb|ETP47055.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|970662896|gb|KUG00210.1| Transcription elongation factor SPT4 [Phytophthora nicotianae])

HSP 1 Score: 94.7449 bits (234), Expect = 2.099e-21
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 0
Query:  126 AELPQATKGLRACRKCRLIKEFTQFVESGCDNC--MQFED-QEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGE 210
            A++P   + LRAC  C LIK FTQF ++GC+NC  +Q  D ++  AE TS ++ GM+A++ P++SW AKWQ   R  PG+YA+ V GE
Sbjct:   19 ADIPNTFRELRACMTCSLIKTFTQFYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRIVRLIPGIYAVSVSGE 106          
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|301115087|ref|XP_002999313.1| (transcription elongation factor SPT4 [Phytophthora infestans T30-4] >gi|262111407|gb|EEY69459.1| transcription elongation factor SPT4 [Phytophthora infestans T30-4])

HSP 1 Score: 93.9745 bits (232), Expect = 4.253e-21
Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 0
Query:  126 AELPQATKGLRACRKCRLIKEFTQFVESGCDNC--MQFED-QEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGE 210
            A++P   + LRAC  C L+K FTQF ++GC+NC  +Q  D ++  AE TS ++ GM+A++ P++SW AKWQ   R  PG+YA+ V GE
Sbjct:   19 ADIPNTFRELRACMTCSLVKTFTQFYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRIVRLIPGIYAVSVSGE 106          
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|1173960948|gb|OQS07029.1| (transcription elongation factor SPT4 [Thraustotheca clavata])

HSP 1 Score: 92.8189 bits (229), Expect = 9.308e-21
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 0
Query:  118 EEEASNAFAELPQATKGLRACRKCRLIKEFTQFVESGCDNCMQF---EDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGE 210
            +E+A    AE+P   + LRAC  C L+K ++QF ESGCDNC      ++++   + T+ ++ GM+A++ P +SW AKW+   R+ PG+YA+ V GE
Sbjct:    7 DEDAGPVHAEIPTTFRELRACMVCSLVKTYSQFYESGCDNCTVLNMQDNRQRVTDCTTAYFEGMIAMMQPRESWVAKWRRIGRHVPGIYAVSVTGE 102          
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|953497000|emb|CEG41309.1| (transcription elongation factor spt4 [Plasmopara halstedii])

HSP 1 Score: 92.8189 bits (229), Expect = 1.056e-20
Identity = 41/88 (46.59%), Postives = 60/88 (68.18%), Query Frame = 0
Query:  126 AELPQATKGLRACRKCRLIKEFTQFVESGCDNC--MQFED-QEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGE 210
            A++P   + LRAC  C L+K FTQF ++GC+NC  +Q  D ++  AE TS ++ GM+A++ P++SW AKWQ   R  PG+YA+ V GE
Sbjct:   19 ADIPNTFRELRACMTCSLVKTFTQFYDTGCENCAFLQMADNRQRVAECTSAYFEGMIAMMQPKESWVAKWQRIVRSIPGIYAVSVSGE 106          
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|298713246|emb|CBJ33539.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 93.2041 bits (230), Expect = 1.223e-20
Identity = 47/106 (44.34%), Postives = 68/106 (64.15%), Query Frame = 0
Query:  108 DEEEEEEENEEEEASNAFAELPQATKGLRACRKCRLIKEFTQFVESGCDNC--MQFE-DQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGE 210
            D  + EEE  +E A    AE+P + KGLRAC++C L+K   QFV  GC+NC  +Q E DQ    + T+ +++G++A++ PE SW  KWQ     RPG+YA++V GE
Sbjct:    8 DGLDLEEEGLDEFAG---AEIPTSLKGLRACKRCSLVKGNDQFVNHGCENCPFLQMESDQARVQDCTTTYFSGLIAMMDPESSWVGKWQRISECRPGMYAIEVVGE 110          
BLAST of EWM28342.1 vs. NCBI_GenBank
Match: gi|669165204|ref|XP_008618164.1| (hypothetical protein SDRG_13844 [Saprolegnia diclina VS20] >gi|813198554|ref|XP_012208860.1| hypothetical protein SPRG_14342 [Saprolegnia parasitica CBS 223.65] >gi|813225718|ref|XP_012211936.1| hypothetical protein SPRG_17218 [Saprolegnia parasitica CBS 223.65] >gi|530730274|gb|EQC28516.1| hypothetical protein SDRG_13844 [Saprolegnia diclina VS20] >gi|641521945|gb|KDO17354.1| hypothetical protein SPRG_17218 [Saprolegnia parasitica CBS 223.65] >gi|641526003|gb|KDO20403.1| hypothetical protein SPRG_14342 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 92.4337 bits (228), Expect = 1.694e-20
Identity = 39/89 (43.82%), Postives = 60/89 (67.42%), Query Frame = 0
Query:  126 AELPQATKGLRACRKCRLIKEFTQFVESGCDNC----MQFEDQEEAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYRPGLYALQVEGE 210
            AE+P   + LRAC  C L+K ++QF ESGCDNC    MQ ++++   + T+ ++ GM+A++ P +SW AKW+   R+ PG+YA+ V GE
Sbjct:   15 AEIPTTFRELRACMICSLVKTYSQFYESGCDNCAVLNMQ-DNRQRVTDCTTAYFEGMIAMMQPRESWVAKWRRIGRFVPGIYAVSVTGE 102          
The following BLAST results are available for this feature:
BLAST of EWM28342.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110695|gb|EWM28342.1|1.631e-149100.00transcription elongation factor spt4 [Nannochlorop... [more]
gi|635371895|emb|CCI39857.1|3.778e-2346.53unnamed protein product [Albugo candida][more]
gi|1214702228|gb|OWZ14457.1|2.011e-2147.73Transcription elongation factor SPT4 [Phytophthora... [more]
gi|695387368|ref|XP_009518860.1|2.076e-2147.73putative transcription protein [Phytophthora sojae... [more]
gi|675167069|ref|XP_008892419.1|2.099e-2147.73hypothetical protein, variant [Phytophthora parasi... [more]
gi|301115087|ref|XP_002999313.1|4.253e-2146.59transcription elongation factor SPT4 [Phytophthora... [more]
gi|1173960948|gb|OQS07029.1|9.308e-2140.63transcription elongation factor SPT4 [Thraustothec... [more]
gi|953497000|emb|CEG41309.1|1.056e-2046.59transcription elongation factor spt4 [Plasmopara h... [more]
gi|298713246|emb|CBJ33539.1|1.223e-2044.34conserved unknown protein [Ectocarpus siliculosus][more]
gi|669165204|ref|XP_008618164.1|1.694e-2043.82hypothetical protein SDRG_13844 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2342rna2342Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications