rna2341, rna2341 (mRNA) Nannochloropsis gaditana

Overview
Namerna2341
Unique Namerna2341
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1638
Alignment locationCM002459.1:146921..148611 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100367g4.6895.mrna
Orig protein idgnl|cribi|Naga_100367g4.6895
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:146921..148611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100367g4gene2236Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2341rna2341-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28341.1cds2333Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2341 ID=rna2341|Name=rna2341|organism=Nannochloropsis gaditana|type=mRNA|length=1638bp
GGACGCCTACAGTAGAAGTTTCTATCAGTGGAATTGTCGGTGAAAAGATG
ATACGAGTCGTTGTGTGGTGCGAATATTTTGCCGGTGGACATGGCGGGAT
ATGGTTCCAGAACTTGTTCTTATGCAAGGAAGCAGATGTCGTCATAATGT
GGGCCGCGTGCATGGCAGCATAACCCGCATGCCTGCCGGCTACGCGCGCA
CATGAAGCGTTTGAAATCTAACGTAGCCTTCCAGTGTGTAACCTTTATGA
CCTGTTCATGAAGAGACGTGCAGCGACCTAACTGTTTTTCACGCGGGCAC
ACACCTCGTGTGCCCCTAGTTCAACATGTAGCGAGTTGCTGCCCGTATCG
ATGTCTTGTTCTACACTAGGTACTCTTCCCAATCTAACACCATCCACTCA
ATGCGTTGATATTTCTTCGACAGTCACAAAGAAAAAGCGGCCAAGATTCA
TCATGGGTGGCCTTCGCCTTCACATGTTGGCTATGGCTGTGATGATTGCC
GGGGCTGTGTTGAGTGATGCTGCAAAAGAGGCCAGCCGCGGTGATGCCCA
AGGTATCCACCCCCACCTTCGGAAACGTGCCTTACTTCTGCCGCCTCGTG
ATGTGTACGCTATGACCCTTACAAACTCTTTGGCAGTGCCCGTTAACTCG
ACTTTCACCTTCAGCAAAGGTATCACCAACTGGCTCATGATCGAGAAAAA
ACACCTCCAACCGGGAATGTCATTTACTTCCGGTCCGTTCGAATACAAGG
AGGGCAATGCCACCTTTCAGTATATCCTCCGCACGGTCAAGGCCAAGTAC
TGGCCGGCTGGCGCGAACTACTCGGGCCAGGAGGCACTCTGGCTCGATTC
ACCTTTTTCTGGTGTCACGGGCATAACACCCCTACTGGAAGCAGAACTTA
CACCCAAGGGAGACGACAGCACGCGGCAGCATATGGGCGCCCTCGTTCTC
AAAATACCCACGGCCGCATAGAAGCATGACGATGACTTTGAAAAAAGATA
GGAAGCACGAGTGGTTGATGTGCACGTGTGGACTGTCTGTTTACCAAGGT
TAGCGATGTAGGTGCCGGGGGAAAGAATTGATGAAAGCCTGTGCAAACCC
AAAAACGAGGCGACACGTCGCCTCGATGTTAGCAAGAACGAGAGTAATGA
TCGGGGGAAGCAAGCTTAGCTTCCGATAGCCGAGACGAAGCGTTGTGGAA
TATCAGTGCAGTAACTATACCCAGCTGTAATCGATGACGTAAAATGGCGG
GGAGTCACAGATATCTTAGAAGGGTTTTTGTTACTCGTGTTACTGTAGAA
TGTACAATCTGCCTCCCTTTTGCGGTGCATTGGATTTCAAAGTAAAGTCT
GTATTACAGGAATAAGTAAATTTGCTGGAATTTAAAGGCTTCCCGCGTAC
ACATTAGGGCAATAATGCGAATCAGAGAATGGTGACGTAGTCATGGAGGC
CGGGGCTCCTTACTTTCTTCATGAAACAGGTAGCTTTACATCATATCCTC
GTCGACACGAGCCGTCGTCCACATTCAGTCACCCTTGCTCACCCCGGACA
TAAAGTTTACGTATCAACATAATAAGTATGGCTTTTTCTCCCTGTTTTGT
CTGAACCCTCTGTGACCAAATTTCCGGGGCCATAAGAA
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protein sequence of rna2341

>rna2341-protein ID=rna2341-protein|Name=rna2341|organism=Nannochloropsis gaditana|type=polypeptide|length=350bp
MSCSLPQRLWKLEPWGYPARSHFAVTHLKFPVASGKYGLSLYHIALTYRL
VFLLYWSFWVLYSALGGDGPPTSWWCVYVTNWTAAVMGGYAWGAFLAILI
PRAFFLDRATWFLHDIATPLSIMVCLMYWLAFPVPPISGIIVHLHGVNAL
LMVMDLALARYPYHLKHFLPACGFMACYVVFNGVYWRAAGNVVYTPLDYT
HPFLAATALVGTFFIIFPIVHLLCWRWELACFAWSERRRRNLLGGGNRKR
PLLSSYARRDRESSRGEGRAEDGVEQGLESQDGGDACNGRGGTNGGGTGG
KEGEAIGLTDAVLAMRDVLLLGERGVGERRWEGQGEGVDREEEGKVAGSM
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mRNA from alignment at CM002459.1:146921..148611+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2341 ID=rna2341|Name=rna2341|organism=Nannochloropsis gaditana|type=mRNA|length=1691bp|location=Sequence derived from alignment at CM002459.1:146921..148611+ (Nannochloropsis gaditana)
CGTCCGCTTTACCCGCTGGCGGTGAATGCGATAGGGAGGGTGTTTGAAGT
AAAGCAGAGGACACGACATGTGGTATCAAGCGCATTTTTAATCGCGTAAG
GATGAGTGAAGAAAAGTTTATTGAATTTATATGGTAACATGCGATAACTT
GTTGTGTATGAATAGACGCACTCATTATTGTGTATTGCATGTCATCGTGC
TTGTCCGAAGCTTTGTATTACGGTCGAAGCTGAACGGACCTCAATCCTGT
GTCCTGGTCTTTGACTTCAATCATTTTCAAATCGAGCATTTTCTCCGCAT
AAACAACAGTCTCCCTCTGCATGTTGCCAGACGAAAAGCCGCTTGACTGA
GTCGAGCGTCTCGAAATAtgtcctgctccctcccacaacGTCTATGGAAA
CTTGAGCCATGGGGCTATCCTGCTCGGTCGCACTTCGCAGTCACTCATTT
GAAATTCCCCGTCGCCTCTGGTAAATATGGCCTCAGCTTATACCACATCG
CGTTGACGTATCGCCTCGTTTTCCTTTTGTATTGGTCATTTTGGGTACTC
TATTCCGCCTTGGGCGGGGACGGTCCGCCTACAAGCTGGTGGTGTGTCTA
CGTGACTAACTGGACGGCAGCAGTGATGGGTGGGTACGCCTGGGGTGCAT
TTCTGGCCATCTTGATCCCTCGCGCATTCTTCTTGGACCGGGCGACTTGG
TTTCTTCACGACATTGCCACACCTTTGTCGATTATGGTGTGCCTCATGTA
CTGGTTGGCGTTTCCCGTTCCGCCCATTTCTGGCATTATTGTGCATCTTC
ATGGGGTCAACGCCCTTCTCATGGTGATGGACCTGGCTCTTGCGCGATAC
CCATACCATCTCAAacatttcctccctgcgtGCGGCTTTATGGCGTGCTA
CGTCGTTTTCAACGGGGTGTACTGGCGAGCGGCAGGTAACGTGGTGTACA
CTCCCTTGGATTACACTCACCCCTTCTTGGCGGCAACCGCCCTCGTCGGC
ACCTTTTTCATTATTTTCCCCATCGTCCACTTGCTGTGTTGGCGGTGGGA
ACTGGCCTGTTTTGCGTGGAGCGAGCGGAGACGCCGCAAcctcctggggg
gggggaaccgAAAAAGGCCGCTGCTCAGTTCTTATGCCCGACGGGATCGG
GAGTCaagccggggagaggggagagcaGAAGACGGAGTGGAGCAGGGCTT
GGAGTCACAGGATGGGGGAGATGCTTGTaatgggcggggagggaccaacg
ggggggggacgggagggaaggagggggaggcgataGGTCTGACCGACGCC
GTGTTGGCGATGCGGGATGTCTTACTActgggagagcgaggggtagggga
gaggaggtgggaaggtcAGGGTGAAGGCGTGgatagggaggaagaaggta
aAGTGGCTGGGTCGATGTAGGAATGCAGCTGTCATCTTTTGTGAGAAAGA
TGACCCTTGCTCGGTTTAAATATTTGAAATGTGATCGAGCAGTTGGCATG
CTGAACGGGCATTATGGCACGACTTTTGTAAACAAAGAAATTGGTGAGTC
CGCAAGGAAAGAGGTAAGGCCGAGCGCACTGTTAATGCGGCTGCCCTTCC
ATATAACAACATGCTCGGACTCAGATGACGCCGATACAACTCCGCGATCG
CCTGGACAATCGGCTCACATCCTTTACTTTCACGCCATTCC
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Coding sequence (CDS) from alignment at CM002459.1:146921..148611+

>rna2341 ID=rna2341|Name=rna2341|organism=Nannochloropsis gaditana|type=CDS|length=1053bp|location=Sequence derived from alignment at CM002459.1:146921..148611+ (Nannochloropsis gaditana)
AtgtcctgctccctcccacaacGTCTATGGAAACTTGAGCCATGGGGCTA
TCCTGCTCGGTCGCACTTCGCAGTCACTCATTTGAAATTCCCCGTCGCCT
CTGGTAAATATGGCCTCAGCTTATACCACATCGCGTTGACGTATCGCCTC
GTTTTCCTTTTGTATTGGTCATTTTGGGTACTCTATTCCGCCTTGGGCGG
GGACGGTCCGCCTACAAGCTGGTGGTGTGTCTACGTGACTAACTGGACGG
CAGCAGTGATGGGTGGGTACGCCTGGGGTGCATTTCTGGCCATCTTGATC
CCTCGCGCATTCTTCTTGGACCGGGCGACTTGGTTTCTTCACGACATTGC
CACACCTTTGTCGATTATGGTGTGCCTCATGTACTGGTTGGCGTTTCCCG
TTCCGCCCATTTCTGGCATTATTGTGCATCTTCATGGGGTCAACGCCCTT
CTCATGGTGATGGACCTGGCTCTTGCGCGATACCCATACCATCTCAAaca
tttcctccctgcgtGCGGCTTTATGGCGTGCTACGTCGTTTTCAACGGGG
TGTACTGGCGAGCGGCAGGTAACGTGGTGTACACTCCCTTGGATTACACT
CACCCCTTCTTGGCGGCAACCGCCCTCGTCGGCACCTTTTTCATTATTTT
CCCCATCGTCCACTTGCTGTGTTGGCGGTGGGAACTGGCCTGTTTTGCGT
GGAGCGAGCGGAGACGCCGCAAcctcctggggggggggaaccgAAAAAGG
CCGCTGCTCAGTTCTTATGCCCGACGGGATCGGGAGTCaagccggggaga
ggggagagcaGAAGACGGAGTGGAGCAGGGCTTGGAGTCACAGGATGGGG
GAGATGCTTGTaatgggcggggagggaccaacgggggggggacgggaggg
aaggagggggaggcgataGGTCTGACCGACGCCGTGTTGGCGATGCGGGA
TGTCTTACTActgggagagcgaggggtaggggagaggaggtgggaaggtc
AGGGTGAAGGCGTGgatagggaggaagaaggtaaAGTGGCTGGGTCGATG
TAG
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Synonyms
Publications