EWM28341.1, cds2333 (CDS) Nannochloropsis gaditana

Overview
NameEWM28341.1
Unique Namecds2333
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:147288..148340 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28341.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100367g4.6895.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:147288..148340 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM28341.1 vs. NCBI_GenBank
Match: gi|585110694|gb|EWM28341.1| (hypothetical protein Naga_100367g4 [Nannochloropsis gaditana])

HSP 1 Score: 712.605 bits (1838), Expect = 0.000e+0
Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 0
Query:    1 MSCSLPQRLWKLEPWGYPARSHFAVTHLKFPVASGKYGLSLYHIALTYRLVFLLYWSFWVLYSALGGDGPPTSWWCVYVTNWTAAVMGGYAWGAFLAILIPRAFFLDRATWFLHDIATPLSIMVCLMYWLAFPVPPISGIIVHLHGVNALLMVMDLALARYPYHLKHFLPACGFMACYVVFNGVYWRAAGNVVYTPLDYTHPFLAATALVGTFFIIFPIVHLLCWRWELACFAWSERRRRNLLGGGNRKRPLLSSYARRDRESSRGEGRAEDGVEQGLESQDGGDACNGRGGTNGGGTGGKEGEAIGLTDAVLAMRDVLLLGERGVGERRWEGQGEGVDREEEGKVAGSM 350
            MSCSLPQRLWKLEPWGYPARSHFAVTHLKFPVASGKYGLSLYHIALTYRLVFLLYWSFWVLYSALGGDGPPTSWWCVYVTNWTAAVMGGYAWGAFLAILIPRAFFLDRATWFLHDIATPLSIMVCLMYWLAFPVPPISGIIVHLHGVNALLMVMDLALARYPYHLKHFLPACGFMACYVVFNGVYWRAAGNVVYTPLDYTHPFLAATALVGTFFIIFPIVHLLCWRWELACFAWSERRRRNLLGGGNRKRPLLSSYARRDRESSRGEGRAEDGVEQGLESQDGGDACNGRGGTNGGGTGGKEGEAIGLTDAVLAMRDVLLLGERGVGERRWEGQGEGVDREEEGKVAGSM
Sbjct:    1 MSCSLPQRLWKLEPWGYPARSHFAVTHLKFPVASGKYGLSLYHIALTYRLVFLLYWSFWVLYSALGGDGPPTSWWCVYVTNWTAAVMGGYAWGAFLAILIPRAFFLDRATWFLHDIATPLSIMVCLMYWLAFPVPPISGIIVHLHGVNALLMVMDLALARYPYHLKHFLPACGFMACYVVFNGVYWRAAGNVVYTPLDYTHPFLAATALVGTFFIIFPIVHLLCWRWELACFAWSERRRRNLLGGGNRKRPLLSSYARRDRESSRGEGRAEDGVEQGLESQDGGDACNGRGGTNGGGTGGKEGEAIGLTDAVLAMRDVLLLGERGVGERRWEGQGEGVDREEEGKVAGSM 350          
BLAST of EWM28341.1 vs. NCBI_GenBank
Match: gi|585101485|gb|EWM21306.1| (hypothetical protein Naga_100350g5 [Nannochloropsis gaditana])

HSP 1 Score: 86.2705 bits (212), Expect = 1.170e-15
Identity = 65/200 (32.50%), Postives = 98/200 (49.00%), Query Frame = 0
Query:   48 YRLVFLLYWSFWVLYSALGGDGPPT-------------SWWCVYVTNWTAAVMGGYAWGAFLAILI----PRAFFLDRATWFLHDIATPLSIMVCLMYW-LAFP-VPPISGIIVHLHGVNALLMVMDLALARYPYHLKHFLPACGFMACYVVFNGVYWRAAGN------VVYTPLDYTHPFLAATALVGTFFIIFPIVHL 222
            YR +   YWS W+L S LG  G P                W +++TNW+  ++G Y W AF A L     PR   L +  W L +     +++V L++W + FP +   S   VH H VN+ L+++DL L   PY+ KH      ++  Y++F+ VYW   G        +Y PLDY HP  A   ++   F++ P VH+
Sbjct:   41 YRCLIASYWSIWILISILGSVGVPLPDALFGSMDNDMGEKWLIFLTNWSMVLLGTYLWTAFAASLYTDHSPR---LLQTVWVLRNCTAVAALVVSLLFWCVLFPAIKKTSWTDVHCHAVNSFLVLLDLTLTHVPYYFKHGWMPFLYLVLYLLFSVVYWAEGGTDPEGDPYIYEPLDYDHPGAATGLVLAVVFLVVPFVHV 237          
BLAST of EWM28341.1 vs. NCBI_GenBank
Match: gi|815810554|ref|XP_012226178.1| (PREDICTED: protein rolling stone-like isoform X2 [Linepithema humile])

HSP 1 Score: 73.1738 bits (178), Expect = 5.117e-11
Identity = 58/205 (28.29%), Postives = 98/205 (47.80%), Query Frame = 0
Query:   43 HIA---LTYRLVFLLYWSFWVLYSA--LGGDGPPTSW--WCVYVTNW------TAAVMGGY----AW-----GAFLAILIPRAFFLDRATWFLHDIATPLSIMVCLMYWLAFPVPPISGII---VHLHGVNALLMVMDLALARYPYHLKHFLPACGFMACYVVFNGVYWRAAG------NVVYTPLDYTHPFLAATALVGTFFII 216
            H+A   +TYR +    W+ + + S    G   P   +  W +Y+TNW      T A +G Y     W      +F A L+ R  F +R  WFL+ + T ++I V + YW+    P I  +    + +H  N++LM++DL +   P+ L++F      + CYV+F+ +Y+ A G      + +Y  LD+  P   +   VG F  +
Sbjct:   63 HVASWYVTYRWIIFYVWAGFFVCSVGEFGSYNPLKQYEKWLIYLTNWDVVLGFTQASIGLYLVLKRWYLQKVTSFDACLL-RLEFTERLYWFLYVVTTNMAIGVTVCYWVTVYDPKIHALDPLNIMMHVCNSVLMLIDLFVTSIPFRLRNFWWCLSIVMCYVIFSVIYYSAGGLDKHGNHYIYAVLDWKQPKRTSLVCVGGFTFV 266          
BLAST of EWM28341.1 vs. NCBI_GenBank
Match: gi|815810556|ref|XP_012226179.1| (PREDICTED: protein rolling stone-like isoform X3 [Linepithema humile])

HSP 1 Score: 72.7886 bits (177), Expect = 6.553e-11
Identity = 58/205 (28.29%), Postives = 98/205 (47.80%), Query Frame = 0
Query:   43 HIA---LTYRLVFLLYWSFWVLYSA--LGGDGPPTSW--WCVYVTNW------TAAVMGGY----AW-----GAFLAILIPRAFFLDRATWFLHDIATPLSIMVCLMYWLAFPVPPISGII---VHLHGVNALLMVMDLALARYPYHLKHFLPACGFMACYVVFNGVYWRAAG------NVVYTPLDYTHPFLAATALVGTFFII 216
            H+A   +TYR +    W+ + + S    G   P   +  W +Y+TNW      T A +G Y     W      +F A L+ R  F +R  WFL+ + T ++I V + YW+    P I  +    + +H  N++LM++DL +   P+ L++F      + CYV+F+ +Y+ A G      + +Y  LD+  P   +   VG F  +
Sbjct:   58 HVASWYVTYRWIIFYVWAGFFVCSVGEFGSYNPLKQYEKWLIYLTNWDVVLGFTQASIGLYLVLKRWYLQKVTSFDACLL-RLEFTERLYWFLYVVTTNMAIGVTVCYWVTVYDPKIHALDPLNIMMHVCNSVLMLIDLFVTSIPFRLRNFWWCLSIVMCYVIFSVIYYSAGGLDKHGNHYIYAVLDWKQPKRTSLVCVGGFTFV 261          
BLAST of EWM28341.1 vs. NCBI_GenBank
Match: gi|815810558|ref|XP_012226180.1| (PREDICTED: protein rolling stone-like isoform X4 [Linepithema humile] >gi|815810560|ref|XP_012226181.1| PREDICTED: protein rolling stone-like isoform X4 [Linepithema humile])

HSP 1 Score: 72.7886 bits (177), Expect = 6.793e-11
Identity = 58/205 (28.29%), Postives = 98/205 (47.80%), Query Frame = 0
Query:   43 HIA---LTYRLVFLLYWSFWVLYSA--LGGDGPPTSW--WCVYVTNW------TAAVMGGYA----W-----GAFLAILIPRAFFLDRATWFLHDIATPLSIMVCLMYWLAFPVPPISGII---VHLHGVNALLMVMDLALARYPYHLKHFLPACGFMACYVVFNGVYWRAAG------NVVYTPLDYTHPFLAATALVGTFFII 216
            H+A   +TYR +    W+ + + S    G   P   +  W +Y+TNW      T A +G Y     W      +F A L+ R  F +R  WFL+ + T ++I V + YW+    P I  +    + +H  N++LM++DL +   P+ L++F      + CYV+F+ +Y+ A G      + +Y  LD+  P   +   VG F  +
Sbjct:   36 HVASWYVTYRWIIFYVWAGFFVCSVGEFGSYNPLKQYEKWLIYLTNWDVVLGFTQASIGLYLVLKRWYLQKVTSFDACLL-RLEFTERLYWFLYVVTTNMAIGVTVCYWVTVYDPKIHALDPLNIMMHVCNSVLMLIDLFVTSIPFRLRNFWWCLSIVMCYVIFSVIYYSAGGLDKHGNHYIYAVLDWKQPKRTSLVCVGGFTFV 239          
BLAST of EWM28341.1 vs. NCBI_GenBank
Match: gi|971518760|dbj|GAQ79406.1| (hypothetical protein KFL_000300040 [Klebsormidium nitens])

HSP 1 Score: 73.559 bits (179), Expect = 7.923e-11
Identity = 64/259 (24.71%), Postives = 94/259 (36.29%), Query Frame = 0
Query:   46 LTYRLVFLLYWSFWVLYSALGGDGPPTSWWCVYVTNWTAAVMGGYAWGAFLAILI-----------------------------------PRAFFLDRA-----------------TWFLHDIATPLSIMVCLMYWLAFPVPP----------------ISGIIVHLHGVNALLMVMDLALARYPYHLKHFLPACGFMACYVVFNGVYWRAAGN------VVYTPLDYTHPFLAATALVGT-FFIIFPIVHLLCWRWEL 229
            L YR   L YW  W++  A  G GP    W VY+T+W   +   Y    F+  L                                    P    L RA                 TW LH++    S+++ ++YW A    P                 S   V++HGV   LM++++A++  PY L H +    +  CY  F  +YW A G        +Y PLDY+       A++     +I P+ HL  W W L
Sbjct:  113 LFYRFCLLFYWGGWIIADATSGSGPK---WFVYLTHWNVLLCSIYFLVVFVMTLQYTLLHWRGDQKGADSYTEEMRKADAFRARRGVEAPPSTSGLARAALRFHTHDYHFNWAYKLTWLLHNLCADASLLIVVVYWTAISSNPGGANFAGGGLGQTGSQYSPTNVNVHGVILGLMLLEIAISAIPYRLAHVVYTFIYGCCYAAFTLIYWGAGGTRPDGERFIYKPLDYSGLGAITVAVLAVMLLVIIPLAHLFIWLWHL 368          
BLAST of EWM28341.1 vs. NCBI_GenBank
Match: gi|815810552|ref|XP_012226177.1| (PREDICTED: protein rolling stone-like isoform X1 [Linepithema humile])

HSP 1 Score: 72.4034 bits (176), Expect = 1.206e-10
Identity = 58/205 (28.29%), Postives = 98/205 (47.80%), Query Frame = 0
Query:   43 HIA---LTYRLVFLLYWSFWVLYSA--LGGDGPPTSW--WCVYVTNW------TAAVMGGYA----W-----GAFLAILIPRAFFLDRATWFLHDIATPLSIMVCLMYWLAFPVPPISGII---VHLHGVNALLMVMDLALARYPYHLKHFLPACGFMACYVVFNGVYWRAAG------NVVYTPLDYTHPFLAATALVGTFFII 216
            H+A   +TYR +    W+ + + S    G   P   +  W +Y+TNW      T A +G Y     W      +F A L+ R  F +R  WFL+ + T ++I V + YW+    P I  +    + +H  N++LM++DL +   P+ L++F      + CYV+F+ +Y+ A G      + +Y  LD+  P   +   VG F  +
Sbjct:   63 HVASWYVTYRWIIFYVWAGFFVCSVGEFGSYNPLKQYEKWLIYLTNWDVVLGFTQASIGLYLVLKRWYLQKVTSFDACLL-RLEFTERLYWFLYVVTTNMAIGVTVCYWVTVYDPKIHALDPLNIMMHVCNSVLMLIDLFVTSIPFRLRNFWWCLSIVMCYVIFSVIYYSAGGLDKHGNHYIYAVLDWKQPKRTSLVCVGGFTFV 266          
BLAST of EWM28341.1 vs. NCBI_GenBank
Match: gi|1022764265|gb|KZS09735.1| (putative Rolling stone [Daphnia magna])

HSP 1 Score: 71.2478 bits (173), Expect = 1.872e-10
Identity = 49/154 (31.82%), Postives = 79/154 (51.30%), Query Frame = 0
Query:  105 FLDRATWFLHDIATPLSIMVCLMYWLAFPVPP--ISGIIVHLHGVNALLMVMDLALARYPYHLKHFLPACGFMACYVVFNGVYWRAAGNVVYTPLDYTHPFLAATALVGT-------FFIIFPIVHLLCWRW-ELACFAWSER-RRRNLLGGGN 247
            FL R +WFL+++   +S+++ ++YW+A   P   ++ +   +HG N+++ + D+ ++  P  L HF      +  YV F+ +YW AAG V    L Y +P L    L  T         II PIVH L W   +L  +A   R RR++    GN
Sbjct:  109 FLGRFSWFLYNVTNLISLVISVIYWIALYTPGTGLTAMNFFVHGFNSIMSIGDILVSGRPCRLMHFYQPFVVILAYVAFSAIYW-AAGGVNSDGLSYIYPVLNWDNLSLTVPFVTIGMLIILPIVHALLWSLHQLRDYAVRSRMRRKSFSQTGN 261          
BLAST of EWM28341.1 vs. NCBI_GenBank
Match: gi|1176066235|ref|XP_020603342.1| (protein rolling stone-like isoform X2 [Orbicella faveolata])

HSP 1 Score: 70.4774 bits (171), Expect = 2.534e-10
Identity = 46/124 (37.10%), Postives = 68/124 (54.84%), Query Frame = 0
Query:  100 IPRAFFLDRATWFLHDIATPLSIMVCLMYWLAF--PVPPISGIIVHLHGVNALLMVMDLALARYPYHLKHFLPACGFMACYVVFNGVYWRAAG-NVVYTPLDYT-HPFLAATALVGTFFIIFPI 219
            +P A+F   A W +++IA+  +IMV L +WL        +  + V LHGVN+++MV D  L+  P  L H +    +   YV+F  +YW A G N +Y   DYT  P LAA + +  FFI  P+
Sbjct:  105 LPMAWF-HEALWVIYNIASVAAIMVTLSFWLLLFNADKGVRAVTVILHGVNSIVMVGDTMLSSIPVRLFHVIYPMLYCIVYVMFTVIYWAAGGHNYIYPQTDYTGRPILAAVSQLCLFFIGLPL 227          
BLAST of EWM28341.1 vs. NCBI_GenBank
Match: gi|751225663|ref|XP_011166226.1| (PREDICTED: protein rolling stone-like isoform X4 [Solenopsis invicta])

HSP 1 Score: 71.2478 bits (173), Expect = 2.899e-10
Identity = 56/209 (26.79%), Postives = 97/209 (46.41%), Query Frame = 0
Query:   46 LTYRLVFLLYWSFWVLYSAL--GGDGPPTSW--WCVYVTNWTAAVMGGYAWGAFLAILIPRAF----------------FLDRATWFLHDIATPLSIMVCLMYWLAFPVPPISGII---VHLHGVNALLMVMDLALARYPYHLKHFLPACGFMACYVVFNGVYWRAAG------NVVYTPLDYTHPFLAATALVG--TFFIIFPIVHLL 223
            L YR +  L W+ +V+ S    G   P   +  W +Y+TNW  A+  G+       IL+ + +                F +R  WFL+ +AT  +I V + YW     P I  +    + +H  N +LM++DL +   P+ L+HF  +   ++ YV+F+ +Y+ A G      + +Y  LD+  P   +   +G  TF I+   V+ +
Sbjct:   67 LYYRWLIFLIWTAFVICSVFEFGSYKPLMQYEKWPIYLTNWGMAL--GFTQALVGGILVSKRWRLQKIPGFDPCGLKLEFTERLYWFLYVVATNFAIGVTVCYWFVVYNPEIHQVDPLNIMMHVCNTVLMLIDLFVTSVPFRLRHFWWSLSIISFYVIFSIIYYFAGGLNKNGHHYIYKVLDWKKPMRTSLICIGGFTFVIVLHCVNCM 273          
The following BLAST results are available for this feature:
BLAST of EWM28341.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110694|gb|EWM28341.1|0.000e+0100.00hypothetical protein Naga_100367g4 [Nannochloropsi... [more]
gi|585101485|gb|EWM21306.1|1.170e-1532.50hypothetical protein Naga_100350g5 [Nannochloropsi... [more]
gi|815810554|ref|XP_012226178.1|5.117e-1128.29PREDICTED: protein rolling stone-like isoform X2 [... [more]
gi|815810556|ref|XP_012226179.1|6.553e-1128.29PREDICTED: protein rolling stone-like isoform X3 [... [more]
gi|815810558|ref|XP_012226180.1|6.793e-1128.29PREDICTED: protein rolling stone-like isoform X4 [... [more]
gi|971518760|dbj|GAQ79406.1|7.923e-1124.71hypothetical protein KFL_000300040 [Klebsormidium ... [more]
gi|815810552|ref|XP_012226177.1|1.206e-1028.29PREDICTED: protein rolling stone-like isoform X1 [... [more]
gi|1022764265|gb|KZS09735.1|1.872e-1031.82putative Rolling stone [Daphnia magna][more]
gi|1176066235|ref|XP_020603342.1|2.534e-1037.10protein rolling stone-like isoform X2 [Orbicella f... [more]
gi|751225663|ref|XP_011166226.1|2.899e-1026.79PREDICTED: protein rolling stone-like isoform X4 [... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2341rna2341Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications