rna2340, rna2340 (mRNA) Nannochloropsis gaditana

Overview
Namerna2340
Unique Namerna2340
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length510
Alignment locationCM002459.1:142807..144604 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100367g3.6897.mrna
Orig protein idgnl|cribi|Naga_100367g3.6897
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:142807..144604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100367g3gene2235Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2340rna2340-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28343.1cds2332Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2340 ID=rna2340|Name=rna2340|organism=Nannochloropsis gaditana|type=mRNA|length=510bp
ATGAAGGGGGAAGGTAGAAGCAGGTCGACAGGTCCGGACACCCCCCCCCA
TGTGCCCCCTACTCCCCCGGCGAGCTCATCCCTACCAAGCAATCGTCTCT
ACGCCGAGGCGGCGCGGCAACGGGAACGGTTGGCCCGGCGCATCGCCGAC
ACCAGAGTCCCAGAATGCACCTTCCATCCAACGCTTGTCTCCCGGGCTGC
CTCCACGAGCCGAACACGCCCTGGAGATCGGGCCTCTGAGATCCCTTTTG
TGGACCGGGCCCAGTCGTACCAACGGCACGTGGAGAGCAAGCTGAGCGCC
CTGCGGAAGGAACAAGCCGCCCAGGAACAGCCCTCGTTCCGGCCGACGCT
CCCCGTGCATACCGGAAAGAAAGGTATCAGCGTTGGTCTGCAGAGGTTTT
GTAGGCCAGCACCGGATAATGCGATGAGAGACTTATTCTTATGGCCCCGG
AAATTTGGTCACAGAGGGTTCAGACAAAACAGGGAGAAAAAGCCATACTT
ATTATGTTGA
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protein sequence of rna2340

>rna2340-protein ID=rna2340-protein|Name=rna2340|organism=Nannochloropsis gaditana|type=polypeptide|length=206bp
MSCSTLGTLPNLTPSTQCVDISSTVTKKKRPRFIMGGLRLHMLAMAVMIA
GAVLSDAAKEASRGDAQGIHPHLRKRALLLPPRDVYAMTLTNSLAVPVNS
TFTFSKGITNWLMIEKKHLQPGMSFTSGPFEYKEGNATFQYILRTVKAKY
WPAGANYSGQEALWLDSPFSGVTGITPLLEAELTPKGDDSTRQHMGALVL
KIPTAA
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mRNA from alignment at CM002459.1:142807..144604-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2340 ID=rna2340|Name=rna2340|organism=Nannochloropsis gaditana|type=mRNA|length=1798bp|location=Sequence derived from alignment at CM002459.1:142807..144604- (Nannochloropsis gaditana)
GGACGCCTACAGTAGAAGTTTCTATCAGTGGAATTGTCGGTGAAAAGATG
ATACGAGTCGTTGTGTGGTGCGAATATTTTGCCGGTGGACATGGCGGGAT
ATGGTTCCAGAACTTGTTCTTATGCAAGGAAGCAGATGTCGTCATAATGT
GGGCCGCGTGCATGGCAGCATAACCCGCATGCCTGCCGGCTACGCGCGCA
CATGAAGCGTTTGAAATCTAACGTAGCCTTCCAGTGTGTAACCTTTATGA
CCTGTTCATGAAGAGACGTGCAGCGACCTAACTGTTTTTCACGCGGGCAC
ACACCTCGTGTGCCCCTAGTTCAACATGTAGCGAGTTGCTGCCCGTATCG
ATGTCTTGTTCTACACTAGGTACTCTTCCCAATCTAACACCATCCACTCA
ATGCGTTGATATTTCTTCGACAGTCACAAAGAAAAAGCGGCCAAGATTCA
TCATGGGTGGCCTTCGCCTTCACATGTTGGCTATGGCTGTGATGATTGCC
GGGGCTGTGTTGAGTGATGCTGCAAAAGAGGCCAGCCGCGGTGATGCCCA
AGGTATCCACCCCCACCTTCGGTAAGTAGACATGTGTCAGTTATACTGCA
ATAGATGGCTGTATAAGTCCTTGTTATGAATCAGAGAGTTTTGGAAGCTG
TCTCGTTCCTCCTTTGTGCTATGCCGCTTTGCATGAATCAAGTTCAACGC
ATTCATGTGTACATTGCCCTTCTTCCCGCAGGAAACGTGCCTTACTTCTG
CCGCCTCGTGATGTGTACGCTATGACCCTTACAAACTCTTTGGCAGTGCC
CGTTAACTCGACTTTCACCTTCAGCAAAGGTATCACCAACTGGCTCATGA
TCGAGAAAAAACACCTCCAACCGGGAATGTCATTTACTTCCGGTCCGTTC
GAATACAAGGAGGGCAATGCCACCTTTCAGTATATCCTCCGCACGGTCAA
GGCCAAGTACTGGCCGGCTGGCGCGAACTACTCGGGCCAGGAGGCACTCT
GGCTCGATTCACCTTTTTCTGGTGTCACGGGCATAACACCCCTACTGGAA
GCAGAACTTACACCCAAGGGAGACGACAGCACGCGGCAGCATATGGGCGC
CCTCGTTCTCAAAATACCCACGGCCGCATAGAAGCATGACGATGACTTTG
AAAAAAGATAGGAAGCACGAGTGGTTGATGTGCACGTGTGGACTGTCTGT
TTACCAAGGTTAGCGATGTAGGTGCCGGGGGAAAGAATTGATGAAAGCCT
GTGCAAACCCAAAAACGAGGCGACACGTCGCCTCGATGTTAGCAAGAACG
AGAGTAATGATCGGGGGAAGCAAGCTTAGCTTCCGATAGCCGAGACGAAG
CGTTGTGGAATATCAGTGCAGTAACTATACCCAGCTGTAATCGATGACGT
AAAATGGCGGGGAGTCACAGATATCTTAGAAGGGTTTTTGTTACTCGTGT
TACTGTAGAATGTACAATCTGCCTCCCTTTTGCGGTGCATTGGATTTCAA
AGTAAAGTCTGTATTACAGGAATAAGTAAATTTGCTGGAATTTAAAGGCT
TCCCGCGTACACATTAGGGCAATAATGCGAATCAGAGAATGGTGACGTAG
TCATGGAGGCCGGGGCTCCTTACTTTCTTCATGAAACAGGTAGCTTTACA
TCATATCCTCGTCGACACGAGCCGTCGTCCACATTCAGTCACCCTTGCTC
ACCCCGGACATAAAGTTTACGTATCAACATAATAAGTATGGCTTTTTCTC
CCTGTTTTGTCTGAACCCTCTGTGACCAAATTTCCGGGGCCATAAGAA
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Coding sequence (CDS) from alignment at CM002459.1:142807..144604-

>rna2340 ID=rna2340|Name=rna2340|organism=Nannochloropsis gaditana|type=CDS|length=1242bp|location=Sequence derived from alignment at CM002459.1:142807..144604- (Nannochloropsis gaditana)
GAAACGTGCCTTACTTCTGCCGCCTCGTGATGTGTACGCTATGACCCTTA
CAAACTCTTTGGCAGTGCCCGTTAACTCGACTTTCACCTTCAGCAAAGGT
ATCACCAACTGGCTCATGATCGAGAAAAAACACCTCCAACCGGGAATGTC
ATTTACTTCCGGTCCGTTCGAATACAAGGAGGGCAATGCCACCTTTCAGT
ATATCCTCCGCACGGTCAAGGCCAAGTACTGGCCGGCTGGCGCGAACTAC
TCGGGCCAGGAGGCACTCTGGCTCGATTCACCTTTTTCTGGTGTCACGGG
CATAACACCCCTACTGGAAGCAGAACTTACACCCAAGGGAGACGACAGCA
CGCGGCAGCATATGGGCGCCCTCGTTCTCAAAATACCCACGGCCGCATAG
ATGTCTTGTTCTACACTAGGTACTCTTCCCAATCTAACACCATCCACTCA
ATGCGTTGATATTTCTTCGACAGTCACAAAGAAAAAGCGGCCAAGATTCA
TCATGGGTGGCCTTCGCCTTCACATGTTGGCTATGGCTGTGATGATTGCC
GGGGCTGTGTTGAGTGATGCTGCAAAAGAGGCCAGCCGCGGTGATGCCCA
AGGTATCCACCCCCACCTTCGGAAACGTGCCTTACTTCTGCCGCCTCGTG
ATGTGTACGCTATGACCCTTACAAACTCTTTGGCAGTGCCCGTTAACTCG
ACTTTCACCTTCAGCAAAGGTATCACCAACTGGCTCATGATCGAGAAAAA
ACACCTCCAACCGGGAATGTCATTTACTTCCGGTCCGTTCGAATACAAGG
AGGGCAATGCCACCTTTCAGTATATCCTCCGCACGGTCAAGGCCAAGTAC
TGGCCGGCTGGCGCGAACTACTCGGGCCAGGAGGCACTCTGGCTCGATTC
ACCTTTTTCTGGTGTCACGGGCATAACACCCCTACTGGAAGCAGAACTTA
CACCCAAGGGAGACGACAGCACGCGGCAGCATATGGGCGCCCTCGTTCTC
AAAATACCCACGGCCGCATAGATGTCTTGTTCTACACTAGGTACTCTTCC
CAATCTAACACCATCCACTCAATGCGTTGATATTTCTTCGACAGTCACAA
AGAAAAAGCGGCCAAGATTCATCATGGGTGGCCTTCGCCTTCACATGTTG
GCTATGGCTGTGATGATTGCCGGGGCTGTGTTGAGTGATGCTGCAAAAGA
GGCCAGCCGCGGTGATGCCCAAGGTATCCACCCCCACCTTCG
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Synonyms
Publications