EWM28343.1, cds2332 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM28343.1
Unique Name	cds2332
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002459.1:144034..144254 -
Alignment location	CM002459.1:143474..143873 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM28343.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100367g3.6897.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:144034..144254 -
CM002459.1	supercontig	CM002459.1:143474..143873 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM28343.1 vs. NCBI_GenBank
Match: gi|585110696|gb|EWM28343.1| (hypothetical protein Naga_100367g3 [Nannochloropsis gaditana])

HSP 1 Score: 427.557 bits (1098), Expect = 1.195e-151
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0

Query:    1 MSCSTLGTLPNLTPSTQCVDISSTVTKKKRPRFIMGGLRLHMLAMAVMIAGAVLSDAAKEASRGDAQGIHPHLRKRALLLPPRDVYAMTLTNSLAVPVNSTFTFSKGITNWLMIEKKHLQPGMSFTSGPFEYKEGNATFQYILRTVKAKYWPAGANYSGQEALWLDSPFSGVTGITPLLEAELTPKGDDSTRQHMGALVLKIPTAA 206
            MSCSTLGTLPNLTPSTQCVDISSTVTKKKRPRFIMGGLRLHMLAMAVMIAGAVLSDAAKEASRGDAQGIHPHLRKRALLLPPRDVYAMTLTNSLAVPVNSTFTFSKGITNWLMIEKKHLQPGMSFTSGPFEYKEGNATFQYILRTVKAKYWPAGANYSGQEALWLDSPFSGVTGITPLLEAELTPKGDDSTRQHMGALVLKIPTAA
Sbjct:    1 MSCSTLGTLPNLTPSTQCVDISSTVTKKKRPRFIMGGLRLHMLAMAVMIAGAVLSDAAKEASRGDAQGIHPHLRKRALLLPPRDVYAMTLTNSLAVPVNSTFTFSKGITNWLMIEKKHLQPGMSFTSGPFEYKEGNATFQYILRTVKAKYWPAGANYSGQEALWLDSPFSGVTGITPLLEAELTPKGDDSTRQHMGALVLKIPTAA 206

[Close]

BLAST of EWM28343.1 vs. NCBI_GenBank
Match: gi|553179906|ref|XP_005852784.1| (hypothetical protein NGA_0082802 [Nannochloropsis gaditana CCMP526] >gi|422295749|gb|EKU23048.1| hypothetical protein NGA_0082802 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 277.33 bits (708), Expect = 3.686e-93
Identity = 140/172 (81.40%), Postives = 140/172 (81.40%), Query Frame = 0

Query:   35 MGGLRLHMLAMAVMIAGAVLSDAAKEASRGDAQGIHPHLRKRALLLPPRDVYAMTLTNSLAVPVNSTFTFSKGITNWLMIEKKHLQPGMSFTSGPFEYKEGNATFQYILRTVKAKYWPAGANYSGQEALWLDSPFSGVTGITPLLEAELTPKGDDSTRQHMGALVLKIPTAA 206
            MGG RLHMLAMAVMIAGAVLSDAAKEASRGDAQGIHPHLRK                               GITNWLMIEKKHLQPGMSFTSGPFEYKEGNATFQYILRTVKAKYWPAGANYSGQEALWLDSPFSGVTGITPLLEAELTPKGDDSTRQHMGALVLKIPTAA
Sbjct:    1 MGGFRLHMLAMAVMIAGAVLSDAAKEASRGDAQGIHPHLRK-------------------------------GITNWLMIEKKHLQPGMSFTSGPFEYKEGNATFQYILRTVKAKYWPAGANYSGQEALWLDSPFSGVTGITPLLEAELTPKGDDSTRQHMGALVLKIPTAA 141

The following BLAST results are available for this feature:

BLAST of EWM28343.1 vs. NCBI_GenBank

BLAST of EWM28343.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2


Match Name	E-value	Identity	Description
gi\|585110696\|gb\|EWM28343.1\|	1.195e-151	100.00	hypothetical protein Naga_100367g3 [Nannochloropsi...	[more]
gi\|553179906\|ref\|XP_005852784.1\|	3.686e-93	81.40	hypothetical protein NGA_0082802 [Nannochloropsis ...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna2340	rna2340	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications