rna2338, rna2338 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2338
Unique Name	rna2338
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	963
Alignment location	CM002459.1:138314..139677 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100367g1.6893.mrna
Orig protein id	gnl\|cribi\|Naga_100367g1.6893
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:138314..139677 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100367g1	gene2233	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2338	rna2338-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28339.1	cds2330	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:138314..139677-
coding sequence from alignment at CM002459.1:138314..139677-

mRNA sequence

>rna2338 ID=rna2338|Name=rna2338|organism=Nannochloropsis gaditana|type=mRNA|length=963bp
CTCCCCTCCTTCCGGCGCGCCCAAAGCTTGGTGGGAACAAAAATACCTAC
AGCTGGTCGAAGGCACATCTTTCGACCCGGCGGAGGCGGGTAAACGTCGG
TCCATCTTCGGGTACTACCAACGGGAAGGAGAAGAAGCGCCGGACTTACC
TTTTTTGCCCTCCGGGGACCCCCCGGAAGACGCCGAGCTTCCCGTCTTCC
GCCGGGAGCAGTTTGTGAACACGACCTGGACGTTGGGGACCGTTTCGGAC
GGTTGGAATCCGTTGAAACGCGTGCAACGGACCCGGGTATTCTTTCGGGA
GGACGGTCGCGTCATTTGGGTCAATGGGGGAAACAAGGGGGAGTGGACGT
TTGACGCGCGCAGCAACGTCTTTCGCTTCGGGCGGGAATCGTTTTTGAGT
TGGAACGGCCGCCGGAGTTACCCTACTCTACTGACGGAGGAGCGCTCTTT
GTACTACATGCAAGGTTTCGTGATTGGGTGGGCGCCTTTCACCCCTTTAA
GCGTCTTCGGTTTGTGGCAAATGTATCGGGACGACGTGAGTGAGGAGGAA
AGAGGGGTGGCACCCTGGGAGGAGGAGGAAGAGGGACGGGAGGGAGGGGA
GGGAGGGGAAGGGGGGAAGAAGAGTATGTTGCGCGGGTGAGACGCGAAGG
AGAGGGAGGAAAAGCAGGCGAGGAATGGCTGCGACTTGTGCCTTGGAACG
ACAGGCATGATGGGCGGAGGGAACGATCACATCAGAAAAGGGCGCAGAGG
AGGAAATAGGAGAGGGGATAAGGCAACAACCAGGACTTTGGGATAGGACG
GGTCAGCGAGCCTTTGACCGAGAAAGTAGCGGAAATTCGAGAGATTGCGT
TGATCGTGTAATGGCATTTGTGGAAATAAGAGCCATTGTTAGGACGCTTC
TTCAACATGTTTCGCCAACTCCGGGTGACATTTGTAGGTAACACCGACCC
GTCATCCTTACTC

protein sequence of rna2338

>rna2338-protein ID=rna2338-protein|Name=rna2338|organism=Nannochloropsis gaditana|type=polypeptide|length=355bp
MSRRRKYRSQQISAKATVGALLVCNSANAFLWGGNCGSLYSSSRRLCISK
GHLSRAPVLPLPFSIVSVKRVPRPVFFNMDKTKFCFRSLTALASIRNDDP
REDETGRAPPSPQPPQVEEHQPQEREQIEPSPDILDTQGSSTPPSPPSEA
ETTGRSNAPPPLTPEGASPYPYPPYGYPPYPAAYYYPPPPSFYPPPPPST
DAPSSSSPSDSSTVPADAPSPPPYDLNAASYFPGGSPYYPPPPYPSPPPS
AEGEDDNTQDPNLSAGTAQLQQQAAQQQEWMQSMYGAYYNQTRGGGGGEG
REGEGWEEAYARAMYSYYPPPPYYFDPYYGFTGPVAWGEGEVEEEEDEWT
TPSRR

mRNA from alignment at CM002459.1:138314..139677-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2338 ID=rna2338|Name=rna2338|organism=Nannochloropsis gaditana|type=mRNA|length=1364bp|location=Sequence derived from alignment at CM002459.1:138314..139677- (Nannochloropsis gaditana)
ATGAGCAGAAGAAGAAAATACAGGAGTCAACAGATATCAGCCAAGGCTAC
TGTGGGGGCGCTTTTAGTTTGCAACTCCGGTACGTACTTCTGCACGGACG
GGCGAATTATGAAGTCAGATAGCATAACGGGCAAGTGAACGGCTACCGCC
TCGCACCCGTCAATCCCATCACATAGCCGTCACACCCTCCCTTTGTTTGT
CACATCCATATCATGTAACAGCCAACGCCTTCTTGTGGGGTGGTAACTGT
GGTTCGTTGTATTCCTCATCGCGGCGGCTGTGCATTTCCAAAGGCCATCT
CAGCCGAGCACCAGTGCTGCCGCTCCCCTTTTCAATCGTTTCCGTAAAGA
GAGTCCCGCGTCCTGTTTTTTTCAACATGGACAAGACAAAATTTTGTTTT
CGATCTTTGACTGCTTTGGCATCCATCAGGAATGACGACCCACGAGAAGA
TGAAACAGGACGAGCACCACCATCACCGCAACCACCTCAAGTTGAGGAGC
ATCAGCCGCAGGAGCGGGAGCAGATCGAGCCATCCCCTGACATCTTGGAT
ACTCAAGGTTCCTCCACTCCCCCTTCTCCCCCCTCTGAGGCAGAAACCAC
CGGGCGATCGAACGCACCGCCGCCTCTCACGCCGGAGGGGGCTTCTCCCT
ACCCGTACCCCCCTTATGGCTACCCGCCCTACCCGGCTGCTTACTACTAC
CCACCCCCACCTTCCTTCTATCCTCCTCCTCCCCCATCTACGGACGCCCC
GTCCTCTTCCTCTCCCAGCGACTCCTCCACCGTCCCCGCGGACGCGCCGT
CCCCTCCCCCGTACGACCTTAATGCAGCCTCCTATTTCCCGGGAGGTTCT
CCGTACTACCCACCTCCGCCCTATCCTTCACCCCCTCCTTCGGCAGAAGG
AGAGGATGACAACACACAAGACCCCAATCTTTCGGCCGGGACCGCACAGC
TCCAGCAACAAGCAGCGCAGCAGCAAGAGTGGATGCAGTCCATGTACGGC
GCGTATTACAACCAGACAAGGGGAGGAGGAGGGGGCGAAGGAAGGGAGGG
GGAAGGGTGGGAAGAGGCGTATGCGCGGGCCATGTATTCGTATTATCCTC
CTCCCCCTTATTACTTTGACCCGTACTACGGTTTCACGGGACCGGTGGCG
TGGGGAGAGGGGGAGGTGGAGGAGGAGGAGGACGAGTGGAGTGAGGACGA
GTGGAGTGAGGACGAATGGGAGGATGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAAGAGGAATGGAGGAGACGAGGAAGGGAAGGGTGG
GAGGACGAGGAGGAGAGAGAAGGAGGGCTGGACGACCTGATCAGCGACGC
CATCACGTCGGTGA

Coding sequence (CDS) from alignment at CM002459.1:138314..139677-

>rna2338 ID=rna2338|Name=rna2338|organism=Nannochloropsis gaditana|type=CDS|length=3204bp|location=Sequence derived from alignment at CM002459.1:138314..139677- (Nannochloropsis gaditana)
CGACGCCATCACGTCGGTGACCAACGCCTTCTTGTGGGGTGGTAACTGTG
GTTCGTTGTATTCCTCATCGCGGCGGCTGTGCATTTCCAAAGGCCATCTC
AGCCGAGCACCAGTGCTGCCGCTCCCCTTTTCAATCGTTTCCGTAAAGAG
AGTCCCGCGTCCTGTTTTTTTCAACATGGACAAGACAAAATTTTGTTTTC
GATCTTTGACTGCTTTGGCATCCATCAGGAATGACGACCCACGAGAAGAT
GAAACAGGACGAGCACCACCATCACCGCAACCACCTCAAGTTGAGGAGCA
TCAGCCGCAGGAGCGGGAGCAGATCGAGCCATCCCCTGACATCTTGGATA
CTCAAGGTTCCTCCACTCCCCCTTCTCCCCCCTCTGAGGCAGAAACCACC
GGGCGATCGAACGCACCGCCGCCTCTCACGCCGGAGGGGGCTTCTCCCTA
CCCGTACCCCCCTTATGGCTACCCGCCCTACCCGGCTGCTTACTACTACC
CACCCCCACCTTCCTTCTATCCTCCTCCTCCCCCATCTACGGACGCCCCG
TCCTCTTCCTCTCCCAGCGACTCCTCCACCGTCCCCGCGGACGCGCCGTC
CCCTCCCCCGTACGACCTTAATGCAGCCTCCTATTTCCCGGGAGGTTCTC
CGTACTACCCACCTCCGCCCTATCCTTCACCCCCTCCTTCGGCAGAAGGA
GAGGATGACAACACACAAGACCCCAATCTTTCGGCCGGGACCGCACAGCT
CCAGCAACAAGCAGCGCAGCAGCAAGAGTGGATGCAGTCCATGTACGGCG
CGTATTACAACCAGACAAGGGGAGGAGGAGGGGGCGAAGGAAGGGAGGGG
GAAGGGTGGGAAGAGGCGTATGCGCGGGCCATGTATTCGTATTATCCTCC
TCCCCCTTATTACTTTGACCCGTACTACGGTTTCACGGGACCGGTGGCGT
GGGGAGAGGGGGAGGTGGAGGAGGAGGAGGACGAGTGGAATGAGCAGAAG
AAGAAAATACAGGAGTCAACAGATATCAGCCAAGGCTACTGTGGGGGCGC
TTTTAGTTTGCAACTCCGCGACGCCATCACGTCGGTGACCAACGCCTTCT
TGTGGGGTGGTAACTGTGGTTCGTTGTATTCCTCATCGCGGCGGCTGTGC
ATTTCCAAAGGCCATCTCAGCCGAGCACCAGTGCTGCCGCTCCCCTTTTC
AATCGTTTCCGTAAAGAGAGTCCCGCGTCCTGTTTTTTTCAACATGGACA
AGACAAAATTTTGTTTTCGATCTTTGACTGCTTTGGCATCCATCAGGAAT
GACGACCCACGAGAAGATGAAACAGGACGAGCACCACCATCACCGCAACC
ACCTCAAGTTGAGGAGCATCAGCCGCAGGAGCGGGAGCAGATCGAGCCAT
CCCCTGACATCTTGGATACTCAAGGTTCCTCCACTCCCCCTTCTCCCCCC
TCTGAGGCAGAAACCACCGGGCGATCGAACGCACCGCCGCCTCTCACGCC
GGAGGGGGCTTCTCCCTACCCGTACCCCCCTTATGGCTACCCGCCCTACC
CGGCTGCTTACTACTACCCACCCCCACCTTCCTTCTATCCTCCTCCTCCC
CCATCTACGGACGCCCCGTCCTCTTCCTCTCCCAGCGACTCCTCCACCGT
CCCCGCGGACGCGCCGTCCCCTCCCCCGTACGACCTTAATGCAGCCTCCT
ATTTCCCGGGAGGTTCTCCGTACTACCCACCTCCGCCCTATCCTTCACCC
CCTCCTTCGGCAGAAGGAGAGGATGACAACACACAAGACCCCAATCTTTC
GGCCGGGACCGCACAGCTCCAGCAACAAGCAGCGCAGCAGCAAGAGTGGA
TGCAGTCCATGTACGGCGCGTATTACAACCAGACAAGGGGAGGAGGAGGG
GGCGAAGGAAGGGAGGGGGAAGGGTGGGAAGAGGCGTATGCGCGGGCCAT
GTATTCGTATTATCCTCCTCCCCCTTATTACTTTGACCCGTACTACGGTT
TCACGGGACCGGTGGCGTGGGGAGAGGGGGAGGTGGAGGAGGAGGAGGAC
GAGTGGAATGAGCAGAAGAAGAAAATACAGGAGTCAACAGATATCAGCCA
AGGCTACTGTGGGGGCGCTTTTAGTTTGCAACTCCGCGACGCCATCACGT
CGGTGACCAACGCCTTCTTGTGGGGTGGTAACTGTGGTTCGTTGTATTCC
TCATCGCGGCGGCTGTGCATTTCCAAAGGCCATCTCAGCCGAGCACCAGT
GCTGCCGCTCCCCTTTTCAATCGTTTCCGTAAAGAGAGTCCCGCGTCCTG
TTTTTTTCAACATGGACAAGACAAAATTTTGTTTTCGATCTTTGACTGCT
TTGGCATCCATCAGGAATGACGACCCACGAGAAGATGAAACAGGACGAGC
ACCACCATCACCGCAACCACCTCAAGTTGAGGAGCATCAGCCGCAGGAGC
GGGAGCAGATCGAGCCATCCCCTGACATCTTGGATACTCAAGGTTCCTCC
ACTCCCCCTTCTCCCCCCTCTGAGGCAGAAACCACCGGGCGATCGAACGC
ACCGCCGCCTCTCACGCCGGAGGGGGCTTCTCCCTACCCGTACCCCCCTT
ATGGCTACCCGCCCTACCCGGCTGCTTACTACTACCCACCCCCACCTTCC
TTCTATCCTCCTCCTCCCCCATCTACGGACGCCCCGTCCTCTTCCTCTCC
CAGCGACTCCTCCACCGTCCCCGCGGACGCGCCGTCCCCTCCCCCGTACG
ACCTTAATGCAGCCTCCTATTTCCCGGGAGGTTCTCCGTACTACCCACCT
CCGCCCTATCCTTCACCCCCTCCTTCGGCAGAAGGAGAGGATGACAACAC
ACAAGACCCCAATCTTTCGGCCGGGACCGCACAGCTCCAGCAACAAGCAG
CGCAGCAGCAAGAGTGGATGCAGTCCATGTACGGCGCGTATTACAACCAG
ACAAGGGGAGGAGGAGGGGGCGAAGGAAGGGAGGGGGAAGGGTGGGAAGA
GGCGTATGCGCGGGCCATGTATTCGTATTATCCTCCTCCCCCTTATTACT
TTGACCCGTACTACGGTTTCACGGGACCGGTGGCGTGGGGAGAGGGGGAG
GTGGAGGAGGAGGAGGACGAGTGGAATGAGCAGAAGAAGAAAATACAGGA
GTCAACAGATATCAGCCAAGGCTACTGTGGGGGCGCTTTTAGTTTGCAAC
TCCG

Synonyms

Publications