rna2332, rna2332 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2332
Unique Name	rna2332
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2928
Alignment location	CM002459.1:126839..129091 -

Link to JBrowse

Properties


Property Name	Value
Product	F-box domain, cyclin-like protein
Orig transcript id	gnl\|cribi\|Naga_100657g2.8951.mrna
Orig protein id	gnl\|cribi\|Naga_100657g2.8951
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:126839..129091 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100657g2	gene2227	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28350.1	cds2324	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2332	rna2332-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:126839..129091-
coding sequence from alignment at CM002459.1:126839..129091-

mRNA sequence

>rna2332 ID=rna2332|Name=rna2332|organism=Nannochloropsis gaditana|type=mRNA|length=2928bp
CCAGCGATCCGGTGTTCTGGTGGACAACTTACTTTTGGTGACGCCTCCGT
GGTAGGCACCGCGGAACTTGGCAACGGAGCATGCAAGGATCTATTCCCTT
CTGTAGGATGTGGTGAGGAAAATTGTGGAGGGGTTGATGGTGGTTTTAAA
TCGTGTTATGTGTGGTCACGGGTGCTATGGTTACGTTGAAGCCCGCAGGC
TGGGGACTTGAGGAGGACGCTAGGCCGAACTACAGTTTCGCAACTCCTCC
CTTTTTATGACTTTGCGCCGGAAACACTTCTCATACATGTTTTGATACAC
CCTTGCATTTTGGTCCACAGAGGCCCTTACCGGCCGGGGCTTTGGCACGT
CGAGCCGCTAGCCCTCCCTCCCTCCCTCTATCTCCCTTCCTCCGTCCCTC
CTCCACCCCTTGCCTGTCCTATGCCCGGTCTCCTGGTGACACCAGCTCCT
TCCAATCCGACGCGCTTGGGTCATGCTCCGTTGCCCTCCACACAACCGAT
CCCCATCGTGCGTTCCTCCACGGCCGAACAGAAACATCGCGCCCATCATG
GGAGTTACCGGCACGTTTCATTTTCCGACCACTATTCAGGATCTCCCGGG
CACGGCATGGGTTCCTTGATTCGTCTAGCACAGGTGGTATTCGAGCACTG
GCAGCACAAACATTCCCCGCCCTCCGTGCCCGCCGGTGCGGATTCCATTT
CTCCCGTGCGTGGCCGTCCCCGAAATAAACCACGGCCATCTTCCATTGTG
ACGGGCGGGGCCGGAGGAAGCGACAAGAAGAAGAAAAGTGCGGTGGGCGA
AGTGAGAGGGGAGGGACGGGGGGGAAAGGAGAAGGTCGGGACGTACGCAC
CTGTCCCCGGGCCCCGTCAGGGCACTCGCGCCGAGGAGTGAGCCTCCTCG
AAGAGGTGACGGGAAGGAAGGATCAGGACGAGTTATGACTAAACATGTCT
AAAATTTTAAATACCGTAGATGAATCATGGCGCACAACTTGAATGACTTT
GTATTACGATAAATTCTGCTTGTATATCAGCGGCAGAAGGAGCCGTTTCG
CCCTCTGAGACTGTCGGTCGTGTACCACGAGTATTTTGCCTACTCCTTCC
ACAACGGGCTCAGAGATACAAGCAATGAAGAAACTGTCTCTTACAGTACA
ATAGAGGCATACACATGAACTTTTGTGTAGTTGATTTATCATGAAGATCA
CGGAGAGATTATTCTCGGAGACTTACAACGCAAGAAACGTTGTGAACATA
GGAAAAGACAACATTTAAAACTTTTGAGTACAAAGATAAACCTGCTCAGC
TGTGCAGTTTTTTCTCAATTGCATGTCTACCTAACCAGTTCATAGAGACG
GGGATGCACCATGTTTTATTTCTTCAATGCGTGGACGCAAAACGTTCGTC
AACCGCATATGTTTTAGGAAATTGCATGCCTCCATGACATCTCAATTGCT
AGATGACACAAAAAGGATGTGTAAAGTCGTTTCTCTATAATTTTAAAAAT
GTACTCCGCCTCTAGGAGATTATCTGATCGGAGACGTAAATGCATCTCAT
TGTACGCAAACCTGGTCCAGCCCAAACATGAGCGGGGTCGAGGAAACCAA
CCCGGATGTATTTACGTTCCCAGACCGCCGCGTGCAGGTACTCAGGACCA
AAGCAAGGCAACGCTACACCGGGTACAAGGTGTCGTGTGAGACAATGAAT
GACAAGGGGCGAAAGCTTTTGGCTCTGACATTGATTTAGGAGATGAAGAA
CTCTAACATTTGTTTCTTGGAGCCCCGAAAGTGCTAAAACGCAGTAGGGA
CAAGACATCAGAGTGTACAATATCACATACTTTGAGGCAAACTTTACCAT
GCGCCTTACTTTTGCATCTTGATATAGAATAAAAAGTATTGACATTAAGC
AACTCGTGCTATCCTGTCAAGTTCTGACGAGATATACCGCCCTCTGCTCG
GTTACGTAGTCTTCGACCTGCCAATCCTCGAACCACGCCACACCCTGCGC
CCGGAAATCACGCCTGTGATCATCCATGCGTTACATAAGCACACGCTACG
ACCCTTCCTCCTCCTCTCCCTCCTCTCGACGCTATTCCTTTCGAGAGGCC
GTCCTGGCGGGGTGGGCCCCTGACGGGGGAATGTTCCTGCCCGAACGGAT
TCCTCACGTGTCACGGGGTGTTCTTGAATCATGGAGAGGATTGACTTATC
CGGAGTTAGTGACGAAACTGCTTGCCCTCTTTATGGACGATGGCGACGCC
GAGGATGCAACACAGAACGCAGAAGTGGACAAAGTGCCCTTGAGAAAGAT
CGTGGATGCTAGTTTTGCCTCCTTTGCAGTCCCCGAAGTGGTTCGATGGA
AAGCCTTGCCGTGGCCGTACCTCTCTTCCTCCTCCACCACCGCCTCGTCC
TCCGCCTCCCTCCCCCTCTCCTGCCACCCTCTTCCTTCCTTCCTAGAGAA
GCAGGAACCTCCTTCCCTGTACATCGCCGAGCTCTTCCACGGTCCTTCTC
TTGCCTTCAAAGACCTCGGCATGCAGGTCCTGACGAACCTTCTGGAACAT
TATCTGCTCCAGGAGGGACGTCGAATGACTTTCTTGGTGGGCACCTCGGG
AGATACGGGGCCCTCGGCCGCGGCTGCTGTGCAGGGCAAAGTCGCCATGC
GCCTCGTCGTCCTCTACCCCTTGGGGAGGGTGAGTACCTTCCAGGAAGCT
CAAATGCTCGCCACGCACGGTGGGGTGGGAGGAAGCGGGGAGAAAGCCAG
TGGGGCTGCGGCCGAGGCAAAAGCGGGGACGTTGGGGACCCCAAACGTGC
GGGTCGTGGCTGTGGAGGGCTCAAGCGACGACCTGGACGTACCAATCGCT
AGCCTCTTCGGAGACCCCGCCTACAGGTGCGGCTGGTTCCGTGACCCTCC
CTCCCACGACTGCCAGCCTGTGGAATGA

protein sequence of rna2332

>rna2332-protein ID=rna2332-protein|Name=rna2332|organism=Nannochloropsis gaditana|type=polypeptide|length=474bp
MAFSFNLHTSPAGREETIRTRAFVETGAAFHAANSLTKGSERGSSVSPGD
ATVTPFPTPRTRVIMWQFISSFHMFKKSGACDDEATKTCYPHPSLASSLD
PTPAPTSCPLPFPSVLPSSTVSYVSPLAPPPFDSPPKPLNFCYLPDDLWR
EIASHLSLRTLLLFSRLCRRTVHIRPPFLERWLRERHGIVLREGERDGLE
KRSTRALAAVRFVQGEVIACRKGMLSVAPPPPALLPPPPAISPSHPLSFP
PAPPNATNIPQAFHTDSNHPPESSLPHALPHSLRLSDLFGTAFNRGRELQ
SVAVTWKGMAFRSRRRLAGRRGTGEDGEEEGVKILPWRSIMGASPIKDDT
IQKIDEHKTDEKWRTHEDECCQTHARPYRFHFLPPSFLFSPSPPGWITVL
PTQTRPGQIKIVSTLPPAWNKRGRARKAAYILLSLDAPQLLHSRMITFCK
KREGGKAGGKEERERMVDKRWSCW

mRNA from alignment at CM002459.1:126839..129091-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2332 ID=rna2332|Name=rna2332|organism=Nannochloropsis gaditana|type=mRNA|length=2253bp|location=Sequence derived from alignment at CM002459.1:126839..129091- (Nannochloropsis gaditana)
ATGGCATTTTCTTTCAACTTGCACACGTCTCCTGCAGGCCGTGAGGAAAC
AATACGGACTCGGGCATTCGTCGAAACCGGGGCCGCGTTCCACGCTGCGA
ATTCCCTAACGAAAGGATCGGAACGTGGAAGTTCCGTCTCTCCTGGGGAT
GCCACCGTAACCCCCTTTCCGACCCCACGGACCAGGGTGATAATGTGGCA
ATTCATTTCCTCTTTCCACATGTTCAAAAAGAGCGGAGCCTGCGACGACG
AAGCGACTAAGACGTGCTATCCACACCCCTCGCTCGCATCCTCCCTCGAC
CCCACACCCGCGCCAACTTCTTGTCCTCTTCCCTTTCCCTCCGTCCTGCC
TTCGTCCACCGTTTCCTATGTCTCGCCGCTCGCTCCTCCCCCCTTTGATT
CTCCTCCCAAACCCCTTAATTTCTGTTACCTTCCCGACGATTTATGGCGC
GAAATCGCCTCCCACCTCTCCTTGCGGACCCTCCTCCTCTTCTCCCGTCT
ATGCCGCCGTACAGTACACATCCGCCCCCCTTTTCTCGAACGCTGGCTCC
GAGAACGGCACGGTATAGTCCTTCGAGAAGGAGAGAGGGACGGGTTGGAA
AAACGGTCCACCCGGGCCCTGGCCGCCGTGCGCTTTGTGCAAGGAGAGGT
GATCGCCTGTCGAAAAGGCATGCTCAGCGTTGCCCCACCTCCACCTGCGC
TCCTCCCTCCACCACCAGCAATATCTCCTTCCCACCCTCTGTCATTCCCT
CCGGCCCCACCTAACGCGACCAACATCCCTCAAGCCTTCCACACGGACTC
GAATCATCCCCCTGAATCCAGCCTCCCGCACGCCCTCCCCCATTCCCTTC
GTCTCTCTGATCTATTTGGGACCGCATTCAACAGAGGGAGGGAGCTTCAA
AGCGTGGCTGTCACCTGGAAAGGAATGGCCTTCAGGAGTCGGCGCCGCTT
GGCGGGAAGACGGGGGACAGGGGAGGACGGGGAGGAGGAAGGGGTGAAAA
TATTGCCCTGGCGCTCGATTATGGGTGCGTCCCCCATAAAAGATGATACA
ATTCAAAAAATAGATGAACACAAGACCGACGAGAAGTGGCGAACACATGA
GGATGAATGTTGCCAAACGCACGCCAGACCTTACCGGTTCCACTTCCTCC
CTCCCTCCTTCCTCTTTTCCCCGTCACCCCCAGGCTGGATCACCGTCCTG
CCCACCCAGACACGCCCGGGGCAAATCAAGATCGTCTCAACCCTTCCCCC
GGCCTGGAACAAGAGGGGACGGGCGAGAAAAGCGGCCTACATTCTACTCT
CCTTGGACGCACCGCAGTTGCTGCACAGCCGGATGATCACTTTTTGTAAG
AAGAGGGAGGGAGGAAAGGCGGGAGGGAAAGAGGAGAGGGAAAGGATGGT
TGATAAGCGTTGGTCGTGCTGGTGATGGTGGCCAGGGCGTGAGATGATAT
TCACGGTCGTCGTCGAGAGTCGTGCGAGAGGACTGGAGTGGGAAGTGCAT
CTACGTCTGGTTACACAACCCCTTTGAGCACAGGGATGCCATCGAAGTGC
TGTTTGTTCTATTTTTTTTAACCTCGATCGATTGTTCTAAAAGGGTTTTC
ATTGGTTCGCACAGGCGAGGCGCATGCTCGGAGTTATCACACAGACGGCG
ACTCTTGGGTTTTCATGCGGGAAGGTCTGGTGGGAGGGAACCAAAATCAT
GGAGGAAAATAAATTGAAACGTTACGAAGCACAGATACAAAGTAAATACC
ACCGGGCGAAGCAGGAGTACACGGTTCAGGTGAATGGTCGATAAATGAAG
AGTGTTTAGCAAAGCAACGGTCCCTCACCTCTGGCAAATAGACTACGAAA
AGGAGAGGATGGTGTACGCTCAAGGTCTACGAAAACGCGATCCTTTTGCT
CGTCATGGTATAAAGAGTAATATCAGAACAATCACTACGGAAAAGCATGT
ACATCTCAGGAACAAACAAACAGTCCGTCATGGGACGGGAGCGAAGGGGG
GAAAGGGGGGGACGAGGAGGGGTGCGGATGACGTCGAATATCACGAAGAG
AAAGAAAGAAAACTGTGAATCAAGCAAATATTTTAGGCCAGTCAGAGACT
TCACCGTGTGGGATAGATGCTGCATGGTTCATTGAGAGCATGGATAGGGA
AACTAGCACTATGGCCATACATCATACAGCAGCCAAGAAGAAAAGGCACT
GTGAAGTAAGGAAACGTTGGACGAAAAATCAAAGAATCACGCTTCTATAA
AGA

Coding sequence (CDS) from alignment at CM002459.1:126839..129091-

>rna2332 ID=rna2332|Name=rna2332|organism=Nannochloropsis gaditana|type=CDS|length=1425bp|location=Sequence derived from alignment at CM002459.1:126839..129091- (Nannochloropsis gaditana)
ATGGCATTTTCTTTCAACTTGCACACGTCTCCTGCAGGCCGTGAGGAAAC
AATACGGACTCGGGCATTCGTCGAAACCGGGGCCGCGTTCCACGCTGCGA
ATTCCCTAACGAAAGGATCGGAACGTGGAAGTTCCGTCTCTCCTGGGGAT
GCCACCGTAACCCCCTTTCCGACCCCACGGACCAGGGTGATAATGTGGCA
ATTCATTTCCTCTTTCCACATGTTCAAAAAGAGCGGAGCCTGCGACGACG
AAGCGACTAAGACGTGCTATCCACACCCCTCGCTCGCATCCTCCCTCGAC
CCCACACCCGCGCCAACTTCTTGTCCTCTTCCCTTTCCCTCCGTCCTGCC
TTCGTCCACCGTTTCCTATGTCTCGCCGCTCGCTCCTCCCCCCTTTGATT
CTCCTCCCAAACCCCTTAATTTCTGTTACCTTCCCGACGATTTATGGCGC
GAAATCGCCTCCCACCTCTCCTTGCGGACCCTCCTCCTCTTCTCCCGTCT
ATGCCGCCGTACAGTACACATCCGCCCCCCTTTTCTCGAACGCTGGCTCC
GAGAACGGCACGGTATAGTCCTTCGAGAAGGAGAGAGGGACGGGTTGGAA
AAACGGTCCACCCGGGCCCTGGCCGCCGTGCGCTTTGTGCAAGGAGAGGT
GATCGCCTGTCGAAAAGGCATGCTCAGCGTTGCCCCACCTCCACCTGCGC
TCCTCCCTCCACCACCAGCAATATCTCCTTCCCACCCTCTGTCATTCCCT
CCGGCCCCACCTAACGCGACCAACATCCCTCAAGCCTTCCACACGGACTC
GAATCATCCCCCTGAATCCAGCCTCCCGCACGCCCTCCCCCATTCCCTTC
GTCTCTCTGATCTATTTGGGACCGCATTCAACAGAGGGAGGGAGCTTCAA
AGCGTGGCTGTCACCTGGAAAGGAATGGCCTTCAGGAGTCGGCGCCGCTT
GGCGGGAAGACGGGGGACAGGGGAGGACGGGGAGGAGGAAGGGGTGAAAA
TATTGCCCTGGCGCTCGATTATGGGTGCGTCCCCCATAAAAGATGATACA
ATTCAAAAAATAGATGAACACAAGACCGACGAGAAGTGGCGAACACATGA
GGATGAATGTTGCCAAACGCACGCCAGACCTTACCGGTTCCACTTCCTCC
CTCCCTCCTTCCTCTTTTCCCCGTCACCCCCAGGCTGGATCACCGTCCTG
CCCACCCAGACACGCCCGGGGCAAATCAAGATCGTCTCAACCCTTCCCCC
GGCCTGGAACAAGAGGGGACGGGCGAGAAAAGCGGCCTACATTCTACTCT
CCTTGGACGCACCGCAGTTGCTGCACAGCCGGATGATCACTTTTTGTAAG
AAGAGGGAGGGAGGAAAGGCGGGAGGGAAAGAGGAGAGGGAAAGGATGGT
TGATAAGCGTTGGTCGTGCTGGTGA

Synonyms

Publications