EWM28350.1, cds2324 (CDS) Nannochloropsis gaditana

Overview
NameEWM28350.1
Unique Namecds2324
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:127667..129091 -

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Properties
Property NameValue
Protein idEWM28350.1
ProductF-box domain, cyclin-like protein
Orig transcript idgnl|cribi|Naga_100657g2.8951.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:127667..129091 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
Homology
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BLAST of EWM28350.1 vs. NCBI_GenBank
Match: gi|585110707|gb|EWM28350.1| (F-box domain, cyclin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 962.214 bits (2486), Expect = 0.000e+0
Identity = 474/474 (100.00%), Postives = 474/474 (100.00%), Query Frame = 0 
Query:    1 MAFSFNLHTSPAGREETIRTRAFVETGAAFHAANSLTKGSERGSSVSPGDATVTPFPTPRTRVIMWQFISSFHMFKKSGACDDEATKTCYPHPSLASSLDPTPAPTSCPLPFPSVLPSSTVSYVSPLAPPPFDSPPKPLNFCYLPDDLWREIASHLSLRTLLLFSRLCRRTVHIRPPFLERWLRERHGIVLREGERDGLEKRSTRALAAVRFVQGEVIACRKGMLSVAPPPPALLPPPPAISPSHPLSFPPAPPNATNIPQAFHTDSNHPPESSLPHALPHSLRLSDLFGTAFNRGRELQSVAVTWKGMAFRSRRRLAGRRGTGEDGEEEGVKILPWRSIMGASPIKDDTIQKIDEHKTDEKWRTHEDECCQTHARPYRFHFLPPSFLFSPSPPGWITVLPTQTRPGQIKIVSTLPPAWNKRGRARKAAYILLSLDAPQLLHSRMITFCKKREGGKAGGKEERERMVDKRWSCW 474
            MAFSFNLHTSPAGREETIRTRAFVETGAAFHAANSLTKGSERGSSVSPGDATVTPFPTPRTRVIMWQFISSFHMFKKSGACDDEATKTCYPHPSLASSLDPTPAPTSCPLPFPSVLPSSTVSYVSPLAPPPFDSPPKPLNFCYLPDDLWREIASHLSLRTLLLFSRLCRRTVHIRPPFLERWLRERHGIVLREGERDGLEKRSTRALAAVRFVQGEVIACRKGMLSVAPPPPALLPPPPAISPSHPLSFPPAPPNATNIPQAFHTDSNHPPESSLPHALPHSLRLSDLFGTAFNRGRELQSVAVTWKGMAFRSRRRLAGRRGTGEDGEEEGVKILPWRSIMGASPIKDDTIQKIDEHKTDEKWRTHEDECCQTHARPYRFHFLPPSFLFSPSPPGWITVLPTQTRPGQIKIVSTLPPAWNKRGRARKAAYILLSLDAPQLLHSRMITFCKKREGGKAGGKEERERMVDKRWSCW
Sbjct:    1 MAFSFNLHTSPAGREETIRTRAFVETGAAFHAANSLTKGSERGSSVSPGDATVTPFPTPRTRVIMWQFISSFHMFKKSGACDDEATKTCYPHPSLASSLDPTPAPTSCPLPFPSVLPSSTVSYVSPLAPPPFDSPPKPLNFCYLPDDLWREIASHLSLRTLLLFSRLCRRTVHIRPPFLERWLRERHGIVLREGERDGLEKRSTRALAAVRFVQGEVIACRKGMLSVAPPPPALLPPPPAISPSHPLSFPPAPPNATNIPQAFHTDSNHPPESSLPHALPHSLRLSDLFGTAFNRGRELQSVAVTWKGMAFRSRRRLAGRRGTGEDGEEEGVKILPWRSIMGASPIKDDTIQKIDEHKTDEKWRTHEDECCQTHARPYRFHFLPPSFLFSPSPPGWITVLPTQTRPGQIKIVSTLPPAWNKRGRARKAAYILLSLDAPQLLHSRMITFCKKREGGKAGGKEERERMVDKRWSCW 474
The following BLAST results are available for this feature:
BLAST of EWM28350.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585110707|gb|EWM28350.1|0.000e+0100.00F-box domain, cyclin-like protein [Nannochloropsis... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2332rna2332Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications