rna2322, rna2322 (mRNA) Nannochloropsis gaditana

Overview
Namerna2322
Unique Namerna2322
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1117
Alignment locationCM002459.1:110570..111840 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100368g7.3796.mrna
Orig protein idgnl|cribi|Naga_100368g7.3796
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:110570..111840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100368g7gene2217Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2322rna2322-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28359.1cds2314Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2322 ID=rna2322|Name=rna2322|organism=Nannochloropsis gaditana|type=mRNA|length=1117bp
GAATAGCATTGTTGCGCATGAGGGCAGGCGATGCCTGTCTGTCTGGTGTC
CCGAGGCACGTTTGCCAACCCCGCCACCCAACGCGTCAGACTGTCCGAGC
ACCCAAAACGACACAATCTCATTCATAAACGCCTTTAAGCCAAGCACGAC
GGCATGGAGCCGAGAACCTGGTGCCTGAGGCATCGGTCGTCTAACCAGAA
TTCTAGGACAAGGCCTCTGTCTATTTCTTTCACGTCCTCTTAGGACACGC
GTGAGGGACTCTCCTTCGCCCATTTCTTGTGATCATAAAATTCATCAAGC
GCCCTCGCTCATTGCCTCCCAAGACATGTAACCATGTCCCACCCACGCAC
ATCCCATCCATCGCACGGTACAGGATCATAAATCATGTCCTCTGGTGTTT
CACTGCCCGACAAGGTGCCAACTCCGGCAGTGCATGCTGGCCATAGCACC
TCGTTCCCGCTTCCCACCCTCCCTGCCTCCGCATCGCCTGCTTCGACCAG
CGCCCTGCCCCCGCTCCCGCCGGGCCTAAGCAACAAAGGACTCAGTCCTG
AAATGGAGGAAATCCTGCGCGAGCAAGCCCGGGTCGAACAGTTGCTGGGG
CAGGTGGAGGCCGAAATTGCCAAACGTGAAGATGACTACTTCGAACGGAC
TGCGCACGGCAACATTGTGCGGGGGTGGGAGGGTGTTTTGGATAACAAGC
CCCCACCCAAGCGTAGGTACGAAGGAAGAGAGCGTGTTTTCACGTGGTCA
AGCTACACGTACTGGTCCCGGCACGGGGCAGGGGCGCAATTGCAAAAGCA
AACCAGCGACGCCTCTTTGGACGGATCGAAGGGCTTTGCGGACGGGGAAG
AAGGCGTGAAGCGGAACCGTGTGTCTGTGGTGATGCCAAGCCCACGGGAC
CCGAAAGTGATGGCGGCAAGGAGGCGAAAGAAACGGCAGCAACAGCGTCG
AAATCATGCCGGCATGGGGGAAAGCAGCGAGGACGACGAAGAGATGTTCA
TGTAAAAAAAGCAACCACAAGATAAGCCTTGCCCGGCATGAATCGACATC
GATTTGCCATATTCGGGTGGACCTGATTCCCTTTGCTTTGTGGAATTTTC
TGGAATCTTCTCGAGAT
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protein sequence of rna2322

>rna2322-protein ID=rna2322-protein|Name=rna2322|organism=Nannochloropsis gaditana|type=polypeptide|length=318bp
MVGTTRQQHTPFFLLCLFFLYVARARNTRDSTIPTPPSWGPTFSVAYLAT
DPSPVGRLPPFPFSYKGTWHYHWPLQRQRLEYNFYEESPGSTGAVERKEK
TLVELWRGHEEVYVFSPTDRSCRLLDLWPDFTPLSPHWLNGHGTGKKKGR
EALYRGRAYDVMRSVQNGSEVLVEVERWEGGAEGGVGTAVPGMVAYFLSP
PREDPGKVVQETRGKVDVPLRVLGPVPGWGEGGEGGREGGREEAVRVFSF
SDFSTQPPSENLFVLPSYCRNASVVVLPQDMGEGGGEGGREGGLGRLRVE
ALHTAFLGRGRGGEAAEE
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mRNA from alignment at CM002459.1:110570..111840+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2322 ID=rna2322|Name=rna2322|organism=Nannochloropsis gaditana|type=mRNA|length=1271bp|location=Sequence derived from alignment at CM002459.1:110570..111840+ (Nannochloropsis gaditana)
ATGGTGGGGACAACGCGACAACAGCacactcctttcttcctgctgTGCCT
GTTTTTCCTGTATGTGGCCCGGGCTAGGAATACCCGAGATAGCACGATAC
CAACACCACCTTCATGGGGCCCAACCTTTTCCGTGGCGTATTTAGCTACG
GTACGATTAAAGGGGGCGTTTATCGTGGTGTTTCTTTTCGTGCTTGTTTT
TGTCATTTTTACTCAGGCGTCGCGCCCCACATTCACTCATcacttcgctt
cctctttcatAATCGTGCTCTCATTCGTTTCCCTTACTTTCCTCATCCAA
ACGGCGATATCCTACTGGATCACATTGATATATCCtgcattttccctcct
ccttttctcttcacATTTTTCCAACAGGACCCAAGCCCAGTAGGAAGGct
gccgcctttccccttctcctacAAAGGCACTTGGCACTACCATTGGCCAC
TACAACGTCAACGCTTGGAGTACAATTTCTATGAGGAAAGTCCTGGAAGC
ACAGGGGCcgtggagaggaaagagaaaaccCTGGTGGAACTCTGGCGGGG
GCACGAGGAAGTGTACGTCTTTTCCCCCACGGACCGTTCGTGCCGGTTGC
TGGACCTATGGCCGGACTtcacgcccctctctccccactGGCTGAACGGA
CatgggacggggaagaagaaggggagagaagcctTGTACAGGGGCCGGGC
GTACGACGTGATGCGCAGTGTTCAGAATGGGAGCGAGgtcttggtggagg
tggagagatgggagggcggggcggagggcggggtagGGACGGCGGTCCCA
GGAATGGTTGCATACTTCTTGTCGCCTCCGCGTGAGGATCCTGGAAAGGT
AGTGcaggaaacgagggggaaagtggACGTCCCTCTTCGTGTTCTAGGTC
CCGTGCCAGGGtggggcgaagggggggaaggaggaagggagggaggaagg
gaggaggcagtaaGGGTGTTCTCTTTCAGTGACTTCTCCACTCAACCGCC
GTCGGAAAATTTATTCGTCCTGCCCAGTTACTGCCGCAATGCGAGCGTGG
TGGTCCTTCCCCAGGacatgggggagggcgggggggagggcgggagggag
ggcggcttggGGCGCCTCCGGGTCGAGGCGTTGCACACGGCCTTTTTGGG
ccgtggtcgaggaggggaagctgCGGAAGAGTAGGTGGCACGTGAAGGGT
GGGAGAttcgaggagaggggagagaagaatCAGACGAACGACCATAAAAA
GTATAAGTATTTGCCTCCAAA
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Coding sequence (CDS) from alignment at CM002459.1:110570..111840+

>rna2322 ID=rna2322|Name=rna2322|organism=Nannochloropsis gaditana|type=CDS|length=1914bp|location=Sequence derived from alignment at CM002459.1:110570..111840+ (Nannochloropsis gaditana)
ATGGTGGGGACAACGCGACAACAGCacactcctttcttcctgctgTGCCT
GTTTTTCCTGTATGTGGCCCGGGCTAGGAATACCCGAGATAGCACGATAC
CAACACCACCTTCATGGGGCCCAACCTTTTCCGTGGCGTATTTAGCTACG
GACCCAAGCCCAGTAGGAAGGctgccgcctttccccttctcctacAAAGG
CACTTGGCACTACCATTGGCCACTACAACGTCAACGCTTGGAGTACAATT
TCTATGAGGAAAGTCCTGGAAGCACAGGGGCcgtggagaggaaagagaaa
accCTGGTGGAACTCTGGCGGGGGCACGAGGAAGTGTACGTCTTTTCCCC
CACGGACCGTTCGTGCCGGTTGCTGGACCTATGGCCGGACTtcacgcccc
tctctccccactGGCTGAACGGACatgggacggggaagaagaaggggaga
gaagcctTGTACAGGGGCCGGGCGTACGACGTGATGCGCAGTGTTCAGAA
TGGGAGCGAGgtcttggtggaggtggagagatgggagggcggggcggagg
gcggggtagGGACGGCGGTCCCAGGAATGGTTGCATACTTCTTGTCGCCT
CCGCGTGAGGATCCTGGAAAGGTAGTGcaggaaacgagggggaaagtggA
CGTCCCTCTTCGTGTTCTAGGTCCCGTGCCAGGGtggggcgaaggggggg
aaggaggaagggagggaggaagggaggaggcagtaaGGGTGTTCTCTTTC
AGTGACTTCTCCACTCAACCGCCGTCGGAAAATTTATTCGTCCTGCCCAG
TTACTGCCGCAATGCGAGCGTGGTGGTCCTTCCCCAGGacatgggggagg
gcgggggggagggcgggagggagggcggcttggGGCGCCTCCGGGTCGAG
GCGTTGCACACGGCCTTTTTGGGccgtggtcgaggaggggaagctgCGGA
AGAGTAGATGGTGGGGACAACGCGACAACAGCacactcctttcttcctgc
tgTGCCTGTTTTTCCTGTATGTGGCCCGGGCTAGGAATACCCGAGATAGC
ACGATACCAACACCACCTTCATGGGGCCCAACCTTTTCCGTGGCGTATTT
AGCTACGGACCCAAGCCCAGTAGGAAGGctgccgcctttccccttctcct
acAAAGGCACTTGGCACTACCATTGGCCACTACAACGTCAACGCTTGGAG
TACAATTTCTATGAGGAAAGTCCTGGAAGCACAGGGGCcgtggagaggaa
agagaaaaccCTGGTGGAACTCTGGCGGGGGCACGAGGAAGTGTACGTCT
TTTCCCCCACGGACCGTTCGTGCCGGTTGCTGGACCTATGGCCGGACTtc
acgcccctctctccccactGGCTGAACGGACatgggacggggaagaagaa
ggggagagaagcctTGTACAGGGGCCGGGCGTACGACGTGATGCGCAGTG
TTCAGAATGGGAGCGAGgtcttggtggaggtggagagatgggagggcggg
gcggagggcggggtagGGACGGCGGTCCCAGGAATGGTTGCATACTTCTT
GTCGCCTCCGCGTGAGGATCCTGGAAAGGTAGTGcaggaaacgaggggga
aagtggACGTCCCTCTTCGTGTTCTAGGTCCCGTGCCAGGGtggggcgaa
gggggggaaggaggaagggagggaggaagggaggaggcagtaaGGGTGTT
CTCTTTCAGTGACTTCTCCACTCAACCGCCGTCGGAAAATTTATTCGTCC
TGCCCAGTTACTGCCGCAATGCGAGCGTGGTGGTCCTTCCCCAGGacatg
ggggagggcgggggggagggcgggagggagggcggcttggGGCGCCTCCG
GGTCGAGGCGTTGCACACGGCCTTTTTGGGccgtggtcgaggaggggaag
ctgCGGAAGAGTAG
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Synonyms
Publications