rna2318, rna2318 (mRNA) Nannochloropsis gaditana

Overview
Namerna2318
Unique Namerna2318
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1267
Alignment locationCM002459.1:104255..105190 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101590g1.4652.mrna
Orig protein idgnl|cribi|Naga_101590g1.4652
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:104255..105190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101590g1gene2213Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28362.1cds2310Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2318rna2318-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2318 ID=rna2318|Name=rna2318|organism=Nannochloropsis gaditana|type=mRNA|length=1267bp
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCTCCCCCCGCCAAT
CGCCCCCACCGAAGCTATTGCCGGTGCGGCCATTCCGTCACCTTTCGCTA
CCTTAAGGAAGCCCGCGTCGAGGCTGAGGATGGGAGGGGAGGAAGTGGGG
GTGGAACCTCCTGCTGCGAAGGAGGGAGGAGAGGGGAGGGGGAGAGGGTT
CATGCCCGGAGGGTTTGAGAGGGCTGACTCGCCCCGCCGTCCCTTTCCCT
CCCTTCCTCTCTCATCCTCCTTACCTTCCATGCGAGAAGGGGAGGAAGAG
GAGGAGAACGGTGAAGGGGGGGTCGGTTTGTTAAGGAGTCTTCAACGGCG
GAAGATCGCGGTGGAGAATTTGCCTGTCACGCGTCCGTGGCGGGAAGGAA
GAAGGGGAAGGGCGGTTCGGGAAGGGGAGGGCCACGCGCATGTGGAATTG
TGGTCCCGGTTGAGGGAGGAGGAGGAGGAGGAGGACGAGAAGGAGGAAGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGAGCCTGGATAC
GAAGCATAACGCAGCGGTTCAGGAACCGGGAGGGAGGTAGCTCCTTGCTG
CGACCTCCGTCGCGTCGCCCCCGCGTCCATCTTGCGTCCTCCCTCCCTTC
CTCCGCTTCTGCCTCCGCCCCTGCCTCCTCCCCCCCTACCGCTTCCTCCC
TCTTGGGCATCGACCGCAGCCTGGGAGGGAGGGAGGACGAGGAGGAGGAG
GGGGGGGATGGGGAGGAGAGGGTGGTGCTGGATGATGTGGTGTCGAGGCT
GTTGGGTCGAGGTCGAGGCTTGTTGAGCTTAGGAGGGCCGGCGTCCATGC
CCTGGCCTCGCCCTGTATGGCCAGGCGGGGCTTCCTCCTCTTCGTACGGG
ACAGATTACCCCGTGCTGCTGCGAGCAGAGGGAGGGGAAGGTTACGAGGC
GTCTTATGCCTTTCATCGAATAAAGAAGGAGTTACCCCCGCAGTAGGTGG
TGTTGGCGGACGAGAGTGTCTGGGAAGCACGGTCTCGGAGGCGGGGGACA
GGACGTGGGGCGGAGGTTCGGAGCAGTAGTGTATGTATGTGGGGAGAGAA
GGAAAAAGGCGTGGATGTAGAAGATATACGAGGAAGTAGATGTTAGTGTG
CATGCTCTCATCGAAGTGTAGGGTCAGGAGGAGGAGGATGGTAGTGAAGA
AAGCTGCGGATGGACGAGTAGAAAAGCAAAGAAGAGCCGGACTCGTCACC
AGGGAAGTCGCCACTTG
back to top

protein sequence of rna2318

>rna2318-protein ID=rna2318-protein|Name=rna2318|organism=Nannochloropsis gaditana|type=polypeptide|length=163bp
MPPPHLGERSTHTPRAGSKTFSCRSAFIMVAVFVAVPLSLSRAVATATWQ
ASRHAPRYRVRATASFLSSFPRPSHPLISSMGTRDAKSRPRPTFLVPCGA
QNRRPGSVARWGASVATSPAKTLPSNPLRPPSVRVHHPLSSIAQDAGCCA
CPRLCLRHLHVRS
back to top

mRNA from alignment at CM002459.1:104255..105190-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2318 ID=rna2318|Name=rna2318|organism=Nannochloropsis gaditana|type=mRNA|length=936bp|location=Sequence derived from alignment at CM002459.1:104255..105190- (Nannochloropsis gaditana)
TGGCAAGCCAAAGATTAAGGGCAGCGGGACTGGAAAGGGGGGAGGTGGCT
GACGGCAACGACTATATTACAGTGAGAAAGCAGTTGTCTTCATCAAGACA
TGCCATGTCTTGCAGTGACGTGTCAGGAACCGTACATGATCCGACTTTGA
GGCTGTTCCATAGGAATTTCGTCACAAAAGGGAGAAACAACGTCATTTCT
AGGGCTGACCCCAGGATACTCATTGAACGCAAACTCATCCCATGATTACT
TCACATTAAAACCCCACATCAGGCCTTTTCTGGCGACTTCGAGATCTTGG
AGGCCGTAGAGTGCACCAGGGTGTATCTTGCGTCGTGTTTTGGGGTGCCT
GGTCGCTTTTCCGAGTGCAATTGAACTCGTACGTCACCTGCTAGCGCACG
CAGCAACCTCCCCCCAAGCGCTTCCTGCCTCAGTGACCGTACACATGCCT
CCGCCTCACCTTGGAGAAAGATCGACGCACACCCCACGCGCCGGTTCCAA
AACCTTCTCCTGCCGCAGCGCCTTCATCATGGTGGCCGTCTTTGTGGCAG
TCCCTCTGTCCTTATCACGTGCCGTGGCAACAGCAACATGGCAAGCCTCC
CGGCATGCCCCTCGATATCGAGTCAGAGCCACAGCCAGCTTCCTCTCCTC
CTTCCCTCGCCCCTCACACCCTCTCATCTCCAGCATGGGCACTCGTGACG
CGAAGTCCCGGCCTCGGCCGACGTTTTTGGTCCCGTGCGGCGCGCAGAAT
CGAAGGCCCGGCTCGGTCGCCCGCTGGGGGGCCAGCGTCGCCACCTCCCC
AGCCAAGACACTTCCTTCCAACCCCCTCCGCCCTCCCTCTGTACGTGTCC
ATCATCCACTTTCATCCATCGCCCAGGATGCAGGGTGCTGCGCATGCCCC
CGGCTCTGCCTGCGCCATCTTCATGTCCGCTCTTGA
back to top

Coding sequence (CDS) from alignment at CM002459.1:104255..105190-

>rna2318 ID=rna2318|Name=rna2318|organism=Nannochloropsis gaditana|type=CDS|length=492bp|location=Sequence derived from alignment at CM002459.1:104255..105190- (Nannochloropsis gaditana)
ATGCCTCCGCCTCACCTTGGAGAAAGATCGACGCACACCCCACGCGCCGG
TTCCAAAACCTTCTCCTGCCGCAGCGCCTTCATCATGGTGGCCGTCTTTG
TGGCAGTCCCTCTGTCCTTATCACGTGCCGTGGCAACAGCAACATGGCAA
GCCTCCCGGCATGCCCCTCGATATCGAGTCAGAGCCACAGCCAGCTTCCT
CTCCTCCTTCCCTCGCCCCTCACACCCTCTCATCTCCAGCATGGGCACTC
GTGACGCGAAGTCCCGGCCTCGGCCGACGTTTTTGGTCCCGTGCGGCGCG
CAGAATCGAAGGCCCGGCTCGGTCGCCCGCTGGGGGGCCAGCGTCGCCAC
CTCCCCAGCCAAGACACTTCCTTCCAACCCCCTCCGCCCTCCCTCTGTAC
GTGTCCATCATCCACTTTCATCCATCGCCCAGGATGCAGGGTGCTGCGCA
TGCCCCCGGCTCTGCCTGCGCCATCTTCATGTCCGCTCTTGA
back to top
Synonyms
Publications