rna2312, rna2312 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2312
Unique Name	rna2312
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2807
Alignment location	CM002459.1:86998..90971 +

Link to JBrowse

Properties


Property Name	Value
Product	Pleckstrin -like protein
Orig transcript id	gnl\|cribi\|Naga_100329g3.5234.mrna
Orig protein id	gnl\|cribi\|Naga_100329g3.5234
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:86998..90971 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100329g3	gene2207	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2312	rna2312-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28367.1	cds2304	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:86998..90971+
coding sequence from alignment at CM002459.1:86998..90971+

mRNA sequence

>rna2312 ID=rna2312|Name=rna2312|organism=Nannochloropsis gaditana|type=mRNA|length=2807bp
CTTTCATGCGAGTCGGGGAACGGGATGAGCAACCCTGGGGTAAAAAAAGC
AACCCCGCTGCAGAGATATGAACACTTGGCAGTGCCAAACTGCTTATACT
CTATCATTTCAGAGAAAATACGGACCTGACCGTGGTTTGGGGTGTGTCCG
CGGTGGCTTGTCCAGCCCGGTGGCTGAAGTTGTAGGGGGTCGTTGCGTAA
GCAGGCTTAGGCTGTGCACACGTTGTCTGAATGTTACTGTTTCCGGTCAA
GTGCATAGAAAGGAACGGTGCAAAGTTTCGTTTTGGGAGCGAATGCAAAG
CCAGTGGGCAGGCTGAATGGAAGCTGATGTGTTGTTGTTCAAGACGCGCG
TTGTGATGGAGGCTCCTGCTCCTGGACGTCACCTCTTTGTGTTTTGGGCA
ACTGACAAAACACCGGCAAATTCTGCGCATGGACTGGGTTTTAGGGCCCC
ACTTCCCATCTTATGTACACTGTCTCAGTAGTTATTGGAGCGCCACGTGT
TTCTCAACACTTTCCCACGCCTCCACCCACCCCATCCCGGACAGGCTGGG
GAAGGACTCGGGAAGGCAATGAGTATGACCGACTCAGGGGAGTCCCTGGT
ACATGTGCTGGTCAGACACGTGTACCGGTCCATTACTCTCGAATTTACCC
TGCCCTTGGAAGGGTCCACGGTGCACGCGGTGAAGAAACGCGTGGAGGCA
GCTTTGGAGGAAAAGCCCGCTCCTCATCGACAACGGTTGATATATTTGGG
TAAAGTCTGCGTGGACGAGACTGCCCCCTTGGTGGGGATCTTGACGGGAG
GAACAGGAAACGACCACGAGACTCTGGACTTGAGCACCCCCAAGACCTTT
CATCTGGTTGTGACGGGGATCACCTCACCCGTTCCCTCCGTTCCTGCCTC
CGTCTCGACCTCTGTGGCACCGACGTCGCCTGCCTTGCCCGCGGGAACTC
CAGGACGCACGCTGAGGGAGGGGGGGAGGGCAGGGGAGCCCGTCGGCAGC
ACCAGTAGCAGCGCCACGCCGACCGTGATTTTCCCCCGACCCACGACCTC
CTCGCCCATCCCCATCCACCCCGGAGTCACAGGAGGGAGCGGACGAGGGC
GGGAGGGAGGGGGGGGGCACGGCGGAACGGGCGGGGGGCTGTCCCACGGG
ATGATTGTGGAGGAAAATGGACGATCGAGGCGGGAGGGAGGGGAGAGGGA
ATGGGAGCGAGAAGCCCCTTCCTCGGCCGCGACCTCTGTCCCGTCCTCCG
TGGAGAGAGATGTCGTGGACTCACCACGCGCCATTCGGGGAGGAAGCATC
AACATTCCTTCTGGTGAGGGAAGCTTGCTCTCCCCCCCTGCCTCCCTCCC
TGCCTCCGTCCCTCCCTCGGTGGACGGTGGTTTCGTGCCCGCGCCCGGGG
AAACAAGGGAGCAGGAGAAGGCCTGGCTGGCCCAGCACCAGCTCCAGCAA
TTGTTTTTTTACCAGCAGCAGCAATACATCCTGAGCTACCAGTATCACTG
TGCCTTGCAGCAGTTGCACCACTGGTACGCCCAGCAGATGGTGGAGGGAG
GGAGGGTGGGAGGGGCAGAAGACGGAGAAAGGAGGTTCACGGGGGCCCCA
CCTCCGGGTACGTGGAATGCCTTCGTGGAGGACCACGCAGAGCGGCAGCA
CGCTCAGGCAGCCGGGGTGGCGCCGATGCCGGCGGGGCGCGAGCATGTCG
GACAAGCGGAGCAAGTAGCCCCGCCGCGTCCCGCTGGAGGGCCACAGGCT
CTTCACGCGGGCCCCTGGTATCAGGAGCCAAGGCCGCAGCTTCTCGAGCT
GGGCAGGGCAGTCTTGGCCCTTTGCGACTGGCAGTTGGCGGCGAAAATGG
TCATGCTCGTCTTTTTGCTCAATCCGGGAAAGCCCCAACGCCTGGCCACC
CTCTGCGTGGTGGCGGCCCTGGCTTATCTGTATCAGACGGGTATCCTGGC
CTTGCTCTTGGGTCCTGCCTTTCGGCGGCCAGCAGGGCGAGGAGGGAGGG
AGGGAGGGAGGGAGGGAGAGGAAGGGGCTCCTGCGGACGGTCCAGAGCAG
GAGGCAGGGGCAGGAGGGAGGGAGGGGCAAAGGGAGGGTGGCACCGGGAA
AGATTTCTGGGCGATCACCAAGGAGATGTGCTACACGGGCGCTTTGCCGG
GGGGGGAACATCGGTGGTGGTTGGAGGCTTTTGTCTTGTCTGCGTCCTTC
TTCCTCTCGCTTTTCCCCACCTGGATCCCCCACAGGATGGAGGAAGGAGT
GGAGGGAGGGAGGGAGGGCGAGCTGGGAGCACTGGCGGGTGAAGCAGCGG
TACAAGGCTAGCGTGGCTTCAAAATACGCTGTTTGAGGCCGCCCTTGTCT
AGTAAGAATTGCAGAAAGGGAGCGTAGGAAGAGGGAACGAGAGACAAACT
CCTGTAAACGACGCCTGCATATCACGTGCGAGGTCGTGGATATTCCCTTC
ATTGAGGTCAGCAGGCAGCAGATGTTCGTCCTGTAATCGAGTCACGATAT
GGTACACCAGCGGTGTCATGATAAGATGTCACGTCGGAACTAGAGAAGCA
AAAGAGTATCAGATGCAGGGACAGCGCTGGGATGTTACAAACATTCACAG
GAGCTTCAAGGACGAATTTAGGTACATATCAGAGGCGTCCATTAAATTCA
GGAAATGATGCAAAAGACAAAAAAGGAGCAAAGACTCGACTGTAGGGTCG
AGGAAGTTAGGGCAAGGAGACACAAGCGAAGGCAATGTCCTTGTACATCT
TGGAATGGACTTTTGGTTATAATTGATTGCGAAATTGAAAACCAAAAGTG
CTTGTTT

protein sequence of rna2312

>rna2312-protein ID=rna2312-protein|Name=rna2312|organism=Nannochloropsis gaditana|type=polypeptide|length=387bp
MEIAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLCFESGVEKGIWMQSS
LTGEVVMTAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRL
LSLLHLSGLLFGDPPVSDGDMQAGLIKLRKHREQMHARVAREARMPPKRQ
PGAHRAGKVTPTPYGGKGEAKEGGPKGGRRKGQGEVGRWDGSQGPPTERE
GWMHIRTDQAWRPGYFVLGKRGSGAWLVEYPTQERSKQVIALEVRDVVRI
SQQVEREQGKRLNASLLIIETERGVWKLRCRSEESAIEWRETLSQWREWT
LQRPRSPTSPPWPAPLCRDDPICPGMPKDRTERNEIARASLLPPDAPSSS
SCPTSPPSPVTLVGRFIWQARAMGGLAVSGTERGLKS

mRNA from alignment at CM002459.1:86998..90971+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2312 ID=rna2312|Name=rna2312|organism=Nannochloropsis gaditana|type=mRNA|length=3974bp|location=Sequence derived from alignment at CM002459.1:86998..90971+ (Nannochloropsis gaditana)
ACCGGGCTGGACAAGCCACCGCGGACACACCCCAAACCACGGTCAGGTCC
GTATTTTCTCTGAAATGATAGAGTATAAGCAGTTTGGCACTGCCAAGTGT
TCATATCTCTGCAGCGGGGTTGCTTTTTTTACCCCAGGGTTGCTCATCCC
GTTCCCCGACTCGCATGAAAGGACACATCACGCACCCACCAACTCGCGCA
CACGCGGCAGACCCATGCTCTGCACCTCCACAGGTGCACAAGGTGGAGTC
CTCGCGAATGGTCACCCACAGCACCGTGCACGGCGGTGAATtacgacgag
ggggaagccCCAAATCTAAACCCGGGCACCCCCGGAGACGTAACAGCAAC
AGTGGAGAAAACAAAGCAACGATCTGCTCGCTTTTAACTATACCCGACAA
CATGGCTGGTTGCACGCAAGCCCGTCATCCCCACGACGTGCACGGGGTTA
GAAAGCTCCTTGATACGCATTGCAGGGACGTCAGGCGTCGTCCGGTCTAT
TAAAATGGGAGTTTTATAATGTCCAGTCCCAAGGGCAGTCTGGCGTCTCT
CTGAGCACGGAGTGGCCCATTTTCGCTTTCCCAGCCCCAAGATAGGTTTA
GAACGGACGGAAGAAAACCTTAGGAAAAATCCTGTAGATCTCGAAAACAT
TTGGATATTTCACCATTGCAACTGTATATTTTGTACAATTGACCCGAAaa
tgtcctctttctctgcctcacCCTATTTTGCAGGGCCGTCCTCTGATTCT
GATGAGGACTAATCGGCCCATCACTCTCCTGCTGTAGCCTCTTACAATGT
TAACGTCAGCCTGCAAAATAAAAATCGAAGAGCCTTATACATTGTACCAT
AGATAGAACTTTTTCTGATGGATACCATGCCATTCTATTCATGGCTACCA
GCAAACCTCTATACCGTCCGGACATGAACACGGAAATAGCTAGTAGcgac
gtcctcttccatgtgGACATAGCAGCGACTGCTAATCAGCCGGAGCCTGA
CCTTTTCAATGCGCTTTCTAGGTTGCTCCAGGAGACAAGCATCATTGAAG
TCGCGTACAGTTTCCAGGAGCAGGTATTTGACACTCACTTTTTCCCTTGC
TccaccctttttctccttgagTCCTTGTCAAGTTCTTTTTTCCATGCACG
GTTTGCGCGGCCACCAATGCCATGTATCATCCTCCATACTATCACAGACG
GCGTACCTAGCAACGCTGTATACCATGTTGGTATTGGGTATCGTACTTTT
TCTCCTACGATACGCAAATCGCAGCCTTTTTCGTTGGCACACGTGGGTAA
ATATCTTTGTCTCCTACTACTGTGCCATCGGTAttctcgtcctcatcccG
CTCGACCTGGCCGTGACCAAACTCCAACGGGAGGCAAGGACGGTGGAGTC
CTATGATCTCCTGTCTATCTATTCAAAcagcctctttttcctctatGGAT
GCTTGTTTTGGCCGGCCCAGGTGGTCGCGGGCGTGCTCCTGTATTTCTTC
GAGGAGTACAACGAAAGCGGGTACTTCACGGTTACCAATCGTATACTCGA
CGCCCTTAGAAACATCGGACGCTTTTTGCTCCTTTGTTTGCTTGTGGGTG
GCGTGGGGTTCGGGATTTTGCTGGGAAGAGGCTACGTCTCGGATGAGAAG
GCTCTCTTGGTCACGGTTGTAACCGTCAACAACACGTACGGCTTGATTGC
CATCATGTCCACCCTCCACGCTCATCGTCCTCAACCTCTTGTCCCTCGCC
TTCATTGCCTacgtcatcctcttcgccctttcTCAACTCCGCGTGGCCGA
CGTAATGGAAATCGCGCCAGGCCGAAAGACCAGTCCCaagtccctctcct
gccatgcTCGGCTCTCCTGCAAGCTAGCCCCTCCTTTGGCGTATAATTTC
CTCACCTTGTGCTTTGAAAGCGGGGTGGAAAAAGGGATCTGGATGCAGAG
TTCCTTGACGGGCGAAGTTGTCATGACAGCCTTCGGTCGGTTTTATGGCT
CCATGGATATCATTCCCTTCGTGGGCAACAATTTCAATCGGATCGTTCCc
ctttttgtcctcttctttgccggCCTCCAATTTTTCAACGTTTTCAACCG
ACTTTTGAGTCTTTTGCACCTGAGTGGGCTCTTGTTTGGAGATCCACCGG
TGAGTGACGGAGACATGCAAGCAGGTCTGATTAAATTGCGGAAACACCGT
GAGCAGATGCACGCCCGGGTGGCTCGTGAGGCCCGAATGCCGCCCAAGCG
TCAACCAGGAGCACACCGGGCGGGAAAAGTGACTCCAACCCCTtatgggg
ggaaaggggaagcgaaggagggcgggccgaagggagggaggaggaaaggg
cagggcGAGGTGGGACGGTGGGATGGCTCCCAGGGGCCTCcgacggaaag
ggagggttggatGCACATAAGGACGGACCAAGCCTGGCGCCCTGGCTATT
TCGTGCTCGGTAAGAGGGGTAGTGGCGCGTGGCTAGTGGAGTATCCCACG
CAGGAGCGGTCGAAGCAAGTGATCGCCCTGGAGGTCCGAGACGTGGTGAG
GATAAGTCAACAGGTGGAAAGGGAACAGGGAAAGCGGTTAAACGCGTCGC
TTTTGATCATCGAGACGGAAAGAGGGGTTTGGAAGTTGCGATGTCGATCC
GAAGAATCGGCGATAGAATGGCGGGAAACCCTGTCCCAGTGGAGGGAATG
GACCCTCCAGCGACCCCGGTCTCCTACATCTCCGCCGTGGCCTGCACCCT
TGTGTAGAGACGATCCAATCTGTCCCGGGATGCCAAAGGACCGTACGGAA
AGGAACGAGATCGCACGCGCGAGCCTGCTTCCCCCCGAcgcgccatcctc
ttccagctgccccacgtcccccccctcgcctgtCACCTTGGTCGGCCGTT
TTATCTGGCAAGCGAGGGCGATGGGAGGGCTAGCAGTCAGCGGGACGGAA
AGAGGATTGAAATCTTGAGACCAACGCGTATGGAAGACCGAGTACGTGTT
TCTcagcggcgggagggcaagCCTGCTGTTGCCTCCACTGGTGCCGTTCA
CTGATGAAGGACCATAGAGATCCTTCGTTTGGGATAAAATCGCGGCGAAG
TTAAACGAACTTCTCAAGCTTTCGGGAACGGGAAGGCTGGCAGGTCGAGC
GGACTCGTCGGGCGGCCAGAGGTAGTATGGCGGGATATGCGCGCATGCCA
CGGGTCTGGGAGGAGTTCAGTGCGATTCTTGGaatcggaggagggagcga
tgggaCAGGACCCTTCTGATTGCACATAGCACGCGCGCGGGGGGAAGAAT
GAGCCAAGGAGAAGTGGATTAGCTTTTCACTCAACGACCCACACGCCTCA
AGCCCTCTTAGATGGAGCAAATATTCCCATTGCACGAGGAGACTTTTCTG
AGGATACACAGAGATAAAAAGTGATGGCTTGGGGACAAGCAAATCCTCAC
GATATGGTGCTTCGTATGAAGTGCTTTGATAAAAAATTGCGAATGGGCCG
TTCGATTGTGAATAACGAAACACTAACCATGGCTCCGAAAAATGTCCGGT
AGGATTTGTATGTGTCTAGGTTCGTCCGAATTACCCATTGAAATAACCCC
GCCTCCCTACTTCCAAAACATGTACTTTGATAGCAAATATTTACTGTGTG
GATATTTGAATGTATTAATCGTACTCTGTTGTTGCTGATGACGAAATCAG
AAGCTGTCGTCTCGCTAATtttcttgaaaaaaaaagcgtAAGCATGATGG
ACCACCGAAGTCAGCAATCATGGGAAGGCAGGATGGTAACAACTCATGTC
AGTGCCATGCGTTTTTAATTTCAACTCCGATATCCAAAAGTGAAACATTC
AGGAGAATCGATgaatgagagagaggcatTAGGCAAGTTTCCATACCATA
TGGTTGCGCCCGAGGTCAGCGGATCCCATTTCACATGTATAACTAACTTA
TCATCGGTATGATAGACCCCTCCG

Coding sequence (CDS) from alignment at CM002459.1:86998..90971+

>rna2312 ID=rna2312|Name=rna2312|organism=Nannochloropsis gaditana|type=CDS|length=1164bp|location=Sequence derived from alignment at CM002459.1:86998..90971+ (Nannochloropsis gaditana)
ATGGAAATCGCGCCAGGCCGAAAGACCAGTCCCaagtccctctcctgcca
tgcTCGGCTCTCCTGCAAGCTAGCCCCTCCTTTGGCGTATAATTTCCTCA
CCTTGTGCTTTGAAAGCGGGGTGGAAAAAGGGATCTGGATGCAGAGTTCC
TTGACGGGCGAAGTTGTCATGACAGCCTTCGGTCGGTTTTATGGCTCCAT
GGATATCATTCCCTTCGTGGGCAACAATTTCAATCGGATCGTTCCccttt
ttgtcctcttctttgccggCCTCCAATTTTTCAACGTTTTCAACCGACTT
TTGAGTCTTTTGCACCTGAGTGGGCTCTTGTTTGGAGATCCACCGGTGAG
TGACGGAGACATGCAAGCAGGTCTGATTAAATTGCGGAAACACCGTGAGC
AGATGCACGCCCGGGTGGCTCGTGAGGCCCGAATGCCGCCCAAGCGTCAA
CCAGGAGCACACCGGGCGGGAAAAGTGACTCCAACCCCTtatggggggaa
aggggaagcgaaggagggcgggccgaagggagggaggaggaaagggcagg
gcGAGGTGGGACGGTGGGATGGCTCCCAGGGGCCTCcgacggaaagggag
ggttggatGCACATAAGGACGGACCAAGCCTGGCGCCCTGGCTATTTCGT
GCTCGGTAAGAGGGGTAGTGGCGCGTGGCTAGTGGAGTATCCCACGCAGG
AGCGGTCGAAGCAAGTGATCGCCCTGGAGGTCCGAGACGTGGTGAGGATA
AGTCAACAGGTGGAAAGGGAACAGGGAAAGCGGTTAAACGCGTCGCTTTT
GATCATCGAGACGGAAAGAGGGGTTTGGAAGTTGCGATGTCGATCCGAAG
AATCGGCGATAGAATGGCGGGAAACCCTGTCCCAGTGGAGGGAATGGACC
CTCCAGCGACCCCGGTCTCCTACATCTCCGCCGTGGCCTGCACCCTTGTG
TAGAGACGATCCAATCTGTCCCGGGATGCCAAAGGACCGTACGGAAAGGA
ACGAGATCGCACGCGCGAGCCTGCTTCCCCCCGAcgcgccatcctcttcc
agctgccccacgtcccccccctcgcctgtCACCTTGGTCGGCCGTTTTAT
CTGGCAAGCGAGGGCGATGGGAGGGCTAGCAGTCAGCGGGACGGAAAGAG
GATTGAAATCTTGA

Synonyms

Publications