EWM28367.1, cds2304 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28367.1 vs. NCBI_GenBank
Match: gi|585110735|gb|EWM28367.1| (Pleckstrin -like protein [Nannochloropsis gaditana]) HSP 1 Score: 787.719 bits (2033), Expect = 0.000e+0 Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 0
Query: 1 MEIAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLCFESGVEKGIWMQSSLTGEVVMTAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLLFGDPPVSDGDMQAGLIKLRKHREQMHARVAREARMPPKRQPGAHRAGKVTPTPYGGKGEAKEGGPKGGRRKGQGEVGRWDGSQGPPTEREGWMHIRTDQAWRPGYFVLGKRGSGAWLVEYPTQERSKQVIALEVRDVVRISQQVEREQGKRLNASLLIIETERGVWKLRCRSEESAIEWRETLSQWREWTLQRPRSPTSPPWPAPLCRDDPICPGMPKDRTERNEIARASLLPPDAPSSSSCPTSPPSPVTLVGRFIWQARAMGGLAVSGTERGLKS 387
MEIAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLCFESGVEKGIWMQSSLTGEVVMTAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLLFGDPPVSDGDMQAGLIKLRKHREQMHARVAREARMPPKRQPGAHRAGKVTPTPYGGKGEAKEGGPKGGRRKGQGEVGRWDGSQGPPTEREGWMHIRTDQAWRPGYFVLGKRGSGAWLVEYPTQERSKQVIALEVRDVVRISQQVEREQGKRLNASLLIIETERGVWKLRCRSEESAIEWRETLSQWREWTLQRPRSPTSPPWPAPLCRDDPICPGMPKDRTERNEIARASLLPPDAPSSSSCPTSPPSPVTLVGRFIWQARAMGGLAVSGTERGLKS
Sbjct: 1 MEIAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLCFESGVEKGIWMQSSLTGEVVMTAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLLFGDPPVSDGDMQAGLIKLRKHREQMHARVAREARMPPKRQPGAHRAGKVTPTPYGGKGEAKEGGPKGGRRKGQGEVGRWDGSQGPPTEREGWMHIRTDQAWRPGYFVLGKRGSGAWLVEYPTQERSKQVIALEVRDVVRISQQVEREQGKRLNASLLIIETERGVWKLRCRSEESAIEWRETLSQWREWTLQRPRSPTSPPWPAPLCRDDPICPGMPKDRTERNEIARASLLPPDAPSSSSCPTSPPSPVTLVGRFIWQARAMGGLAVSGTERGLKS 387
BLAST of EWM28367.1 vs. NCBI_GenBank
Match: gi|923128197|ref|XP_013757565.1| (LMBR1 domain-containing protein 2-B [Thecamonas trahens ATCC 50062] >gi|906556538|gb|KNC49781.1| LMBR1 domain-containing protein 2-B [Thecamonas trahens ATCC 50062]) HSP 1 Score: 75.485 bits (184), Expect = 3.975e-11 Identity = 44/124 (35.48%), Postives = 59/124 (47.58%), Query Frame = 0
Query: 2 EIAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLCFESGVEKGIWMQSSLTGEVVMTAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLLFGDPPVSDGDMQAGL 125
++ PG +S SL A +LA P+ YN+L L E E V TAF G M +PF+G FN I PLF+L FNV++R+L+ LH+ +F D D D GL
Sbjct: 452 KLVPGGLSSANSLLFSAAYLSRLAAPICYNYLLLLHEF--------------EGVDTAFANIMGDMTAVPFLGEQFNTIFPLFILILCLCTLFNVYSRILAWLHIRSFMFED-SFDDSDAPVGL 560
BLAST of EWM28367.1 vs. NCBI_GenBank
Match: gi|1192744415|ref|XP_021002805.1| (LMBR1 domain-containing protein 2-like [Parasteatoda tepidariorum]) HSP 1 Score: 67.3958 bits (163), Expect = 1.763e-8 Identity = 44/135 (32.59%), Postives = 67/135 (49.63%), Query Frame = 0
Query: 3 IAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLC-FESGVEKGIWMQSSLTGEVVMTAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLLFGDPPVSDGDMQAG--LIKLRKHREQ 134
+AP +T+ SL L C+L PPL NFL L +S V K SL E T++ + G MD+IP + + FN P+ + F +FN+ R+L + + GD ++ ++ G LIK K+R Q
Sbjct: 457 LAPHHQTNEYSLIFCGMLLCRLTPPLCLNFLGLIHLDSHVTK-----KSLIEE---TSYTKIMGHMDVIPIISDGFNIYFPILIFFVCLATYFNICTRVLHFIGFEQFI-GDDEMTSDLIEEGKELIKREKNRRQ 582
BLAST of EWM28367.1 vs. NCBI_GenBank
Match: gi|470476175|ref|XP_004342231.1| (LMBR1 domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440799060|gb|ELR20121.1| LMBR1 domain containing protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 64.6994 bits (156), Expect = 1.193e-7 Identity = 54/210 (25.71%), Postives = 86/210 (40.95%), Query Frame = 0
Query: 3 IAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLCFESGVEKGIWMQSSLTGEVVMTAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLLFGDPPVSDGDMQAG---LIKLRKHREQMHARVARE-ARMPPKRQPGAHRAGKVTPTPYGGKGEAKEGGPKGG----RRKGQGEVGRWDGSQGPPTEREGWMH 204
+ P ++T P SL A +L PPLA+N+L + TAF + G+M ++P +G FN VP+ + FN+++R+ SLL + F + ++D ++ G L + R RE+M + A E MP P R G TP G + +RK V + PP+ +H
Sbjct: 422 LIPHQQTDPSSLMFCALYLGRLIPPLAHNYLAMIHNPD-----------------TAFWKLMGNMAVVPILGGTFNTYVPIMLAVVVLFTLFNLYSRIASLLRIKRFQFSE-SMNDETVEEGGEILRRERSKRERMAKQEATERNYMPTALSPRRRRDGPGAKTPAGLDDYVNDLDVLASKVERKRKNMNNVVLTTTNTSPPSRERMNVH 613
BLAST of EWM28367.1 vs. NCBI_GenBank
Match: gi|1032725839|ref|XP_016842162.1| (PREDICTED: LMBR1 domain-containing protein 2 homolog [Nasonia vitripennis]) HSP 1 Score: 63.1586 bits (152), Expect = 3.824e-7 Identity = 49/155 (31.61%), Postives = 78/155 (50.32%), Query Frame = 0
Query: 3 IAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLCFESGVEKGIWMQSSLTGEVVM-TAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLLFGDPPVSDGDMQAG--LIKL-RKHREQMHARVAREARMPPKRQPGA 153
+AP +T+ SL + C+L PP+ NFL+L I M S + VM T + + G MD+I V + FN P+ +L F +F++ +RLLS+L L GD ++ ++ G LIK R+ R+++ + R R +R PG
Sbjct: 453 LAPHHQTNEYSLIFSGMMLCRLTPPMCLNFLSL---------IHMDSHIIKTQVMETQYTQVMGHMDVIKIVSDGFNIYFPMGILAFCLATYFSLGSRLLSMLGFQQFL-GDDELTTDLVEEGRELIKRERRKRQRVEDSINRR-RELQERFPGT 596
BLAST of EWM28367.1 vs. NCBI_GenBank
Match: gi|1188102617|ref|XP_020773046.1| (LMBR1 domain-containing protein 2-B-like [Boleophthalmus pectinirostris]) HSP 1 Score: 63.1586 bits (152), Expect = 4.056e-7 Identity = 48/162 (29.63%), Postives = 73/162 (45.06%), Query Frame = 0
Query: 3 IAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLCFESGVEKGIWMQSSLTGEVVMTAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLLFGDPPVSD-GDMQAGLIKLRKHREQMHARVAREA----RMPPKRQPGAHRAGKV 159
+ P +T SL L C+L PPL NFL L I M SS++ +++ T++ GSM ++ F+ N F P+ +L ++N +R L+LL + D SD D LI+ + ++Q R A R R GA AGK+
Sbjct: 439 LVPHHQTDSYSLLFSGMLFCRLTPPLCLNFLGL---------IHMDSSVSQQIIPTSYTSVMGSMSLLSFISNGFYIYYPMLILLLCFATYYNFGSRCLNLLGFHQYISDDEITSDLVDEGKDLIRRERRKKQKMEGDNRGATWRERYAEDRN-GATTAGKI 590
BLAST of EWM28367.1 vs. NCBI_GenBank
Match: gi|1001608403|gb|KXS12200.1| (LMBR1-domain-containing protein, partial [Gonapodya prolifera JEL478]) HSP 1 Score: 62.7734 bits (151), Expect = 6.971e-7 Identity = 38/122 (31.15%), Postives = 52/122 (42.62%), Query Frame = 0
Query: 3 IAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLCFESGVEKGIWMQSSLTGEVVMTAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLLF--GDPPVSDGDMQ 122
+ P T S+ A C+L PL YNFL L + S T F R G +D++P +G FN PL ++ + FFNV RLL + G +F D P D M+
Sbjct: 814 LVPDHHTDEGSMLFFAAYFCRLNFPLCYNFLNL---------LTTADSANTPATATTFVRVIGKIDLVPLLGGEFNLYFPLVIVVICAVVFFNVHGRLLRMCGGFGDMFFDDDEPAEDIIME 926
BLAST of EWM28367.1 vs. NCBI_GenBank
Match: gi|674577124|emb|CDS37568.1| (LMBR1 domain containing protein 2 [Echinococcus multilocularis]) HSP 1 Score: 62.3882 bits (150), Expect = 7.280e-7 Identity = 51/189 (26.98%), Postives = 78/189 (41.27%), Query Frame = 0
Query: 3 IAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLC-FESGVEKG------------------------IWMQSSLTGEVVMTAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLL---FGD--------PPVSDGDMQAGLIKLRKHREQMHARVAREARMPPKRQPGAHR 155
+ P + SL + + C+L P L NFL L +S V + SS T TAF +F G +D++PF+ N FN P+ V+ + FF++ +RLL+ L + L+ F D PV D ++ G ++ +RE+ R R AR P HR
Sbjct: 356 LVPNHHSDAISLIFYGYMLCRLTPSLCVNFLCLAHLDSHVISASVDTTSAVTNKNSTVATTANVTTNTTIPSSATSAYYETAFTKFMGHLDVVPFIANGFNIYFPIIVVLLCLVTFFSLGSRLLTCLGMPQLIGPSFIDKRLPAGESSPVDDA-IEDG--RMLLYRERTLGRTRRFARNATISVPSTHR 541 The following BLAST results are available for this feature:
BLAST of EWM28367.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 8
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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