EWM28367.1, cds2304 (CDS) Nannochloropsis gaditana

Overview
NameEWM28367.1
Unique Namecds2304
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:88802..89965 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28367.1
ProductPleckstrin -like protein
Orig transcript idgnl|cribi|Naga_100329g3.5234.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:88802..89965 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR011993PH-like_dom
IPR001849PH_domain
Homology
BLAST of EWM28367.1 vs. NCBI_GenBank
Match: gi|585110735|gb|EWM28367.1| (Pleckstrin -like protein [Nannochloropsis gaditana])

HSP 1 Score: 787.719 bits (2033), Expect = 0.000e+0
Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 0
Query:    1 MEIAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLCFESGVEKGIWMQSSLTGEVVMTAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLLFGDPPVSDGDMQAGLIKLRKHREQMHARVAREARMPPKRQPGAHRAGKVTPTPYGGKGEAKEGGPKGGRRKGQGEVGRWDGSQGPPTEREGWMHIRTDQAWRPGYFVLGKRGSGAWLVEYPTQERSKQVIALEVRDVVRISQQVEREQGKRLNASLLIIETERGVWKLRCRSEESAIEWRETLSQWREWTLQRPRSPTSPPWPAPLCRDDPICPGMPKDRTERNEIARASLLPPDAPSSSSCPTSPPSPVTLVGRFIWQARAMGGLAVSGTERGLKS 387
            MEIAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLCFESGVEKGIWMQSSLTGEVVMTAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLLFGDPPVSDGDMQAGLIKLRKHREQMHARVAREARMPPKRQPGAHRAGKVTPTPYGGKGEAKEGGPKGGRRKGQGEVGRWDGSQGPPTEREGWMHIRTDQAWRPGYFVLGKRGSGAWLVEYPTQERSKQVIALEVRDVVRISQQVEREQGKRLNASLLIIETERGVWKLRCRSEESAIEWRETLSQWREWTLQRPRSPTSPPWPAPLCRDDPICPGMPKDRTERNEIARASLLPPDAPSSSSCPTSPPSPVTLVGRFIWQARAMGGLAVSGTERGLKS
Sbjct:    1 MEIAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLCFESGVEKGIWMQSSLTGEVVMTAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLLFGDPPVSDGDMQAGLIKLRKHREQMHARVAREARMPPKRQPGAHRAGKVTPTPYGGKGEAKEGGPKGGRRKGQGEVGRWDGSQGPPTEREGWMHIRTDQAWRPGYFVLGKRGSGAWLVEYPTQERSKQVIALEVRDVVRISQQVEREQGKRLNASLLIIETERGVWKLRCRSEESAIEWRETLSQWREWTLQRPRSPTSPPWPAPLCRDDPICPGMPKDRTERNEIARASLLPPDAPSSSSCPTSPPSPVTLVGRFIWQARAMGGLAVSGTERGLKS 387          
BLAST of EWM28367.1 vs. NCBI_GenBank
Match: gi|923128197|ref|XP_013757565.1| (LMBR1 domain-containing protein 2-B [Thecamonas trahens ATCC 50062] >gi|906556538|gb|KNC49781.1| LMBR1 domain-containing protein 2-B [Thecamonas trahens ATCC 50062])

HSP 1 Score: 75.485 bits (184), Expect = 3.975e-11
Identity = 44/124 (35.48%), Postives = 59/124 (47.58%), Query Frame = 0
Query:    2 EIAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLCFESGVEKGIWMQSSLTGEVVMTAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLLFGDPPVSDGDMQAGL 125
            ++ PG  +S  SL   A    +LA P+ YN+L L  E               E V TAF    G M  +PF+G  FN I PLF+L       FNV++R+L+ LH+   +F D    D D   GL
Sbjct:  452 KLVPGGLSSANSLLFSAAYLSRLAAPICYNYLLLLHEF--------------EGVDTAFANIMGDMTAVPFLGEQFNTIFPLFILILCLCTLFNVYSRILAWLHIRSFMFED-SFDDSDAPVGL 560          
BLAST of EWM28367.1 vs. NCBI_GenBank
Match: gi|1192744415|ref|XP_021002805.1| (LMBR1 domain-containing protein 2-like [Parasteatoda tepidariorum])

HSP 1 Score: 67.3958 bits (163), Expect = 1.763e-8
Identity = 44/135 (32.59%), Postives = 67/135 (49.63%), Query Frame = 0
Query:    3 IAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLC-FESGVEKGIWMQSSLTGEVVMTAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLLFGDPPVSDGDMQAG--LIKLRKHREQ 134
            +AP  +T+  SL     L C+L PPL  NFL L   +S V K      SL  E   T++ +  G MD+IP + + FN   P+ + F     +FN+  R+L  +     + GD  ++   ++ G  LIK  K+R Q
Sbjct:  457 LAPHHQTNEYSLIFCGMLLCRLTPPLCLNFLGLIHLDSHVTK-----KSLIEE---TSYTKIMGHMDVIPIISDGFNIYFPILIFFVCLATYFNICTRVLHFIGFEQFI-GDDEMTSDLIEEGKELIKREKNRRQ 582          
BLAST of EWM28367.1 vs. NCBI_GenBank
Match: gi|470476175|ref|XP_004342231.1| (LMBR1 domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440799060|gb|ELR20121.1| LMBR1 domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 64.6994 bits (156), Expect = 1.193e-7
Identity = 54/210 (25.71%), Postives = 86/210 (40.95%), Query Frame = 0
Query:    3 IAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLCFESGVEKGIWMQSSLTGEVVMTAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLLFGDPPVSDGDMQAG---LIKLRKHREQMHARVARE-ARMPPKRQPGAHRAGKVTPTPYGGKGEAKEGGPKGG----RRKGQGEVGRWDGSQGPPTEREGWMH 204
            + P ++T P SL   A    +L PPLA+N+L +                      TAF +  G+M ++P +G  FN  VP+ +        FN+++R+ SLL +    F +  ++D  ++ G   L + R  RE+M  + A E   MP    P   R G    TP G      +          +RK    V     +  PP+     +H
Sbjct:  422 LIPHQQTDPSSLMFCALYLGRLIPPLAHNYLAMIHNPD-----------------TAFWKLMGNMAVVPILGGTFNTYVPIMLAVVVLFTLFNLYSRIASLLRIKRFQFSE-SMNDETVEEGGEILRRERSKRERMAKQEATERNYMPTALSPRRRRDGPGAKTPAGLDDYVNDLDVLASKVERKRKNMNNVVLTTTNTSPPSRERMNVH 613          
BLAST of EWM28367.1 vs. NCBI_GenBank
Match: gi|1032725839|ref|XP_016842162.1| (PREDICTED: LMBR1 domain-containing protein 2 homolog [Nasonia vitripennis])

HSP 1 Score: 63.1586 bits (152), Expect = 3.824e-7
Identity = 49/155 (31.61%), Postives = 78/155 (50.32%), Query Frame = 0
Query:    3 IAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLCFESGVEKGIWMQSSLTGEVVM-TAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLLFGDPPVSDGDMQAG--LIKL-RKHREQMHARVAREARMPPKRQPGA 153
            +AP  +T+  SL     + C+L PP+  NFL+L         I M S +    VM T + +  G MD+I  V + FN   P+ +L F    +F++ +RLLS+L     L GD  ++   ++ G  LIK  R+ R+++   + R  R   +R PG 
Sbjct:  453 LAPHHQTNEYSLIFSGMMLCRLTPPMCLNFLSL---------IHMDSHIIKTQVMETQYTQVMGHMDVIKIVSDGFNIYFPMGILAFCLATYFSLGSRLLSMLGFQQFL-GDDELTTDLVEEGRELIKRERRKRQRVEDSINRR-RELQERFPGT 596          
BLAST of EWM28367.1 vs. NCBI_GenBank
Match: gi|1188102617|ref|XP_020773046.1| (LMBR1 domain-containing protein 2-B-like [Boleophthalmus pectinirostris])

HSP 1 Score: 63.1586 bits (152), Expect = 4.056e-7
Identity = 48/162 (29.63%), Postives = 73/162 (45.06%), Query Frame = 0
Query:    3 IAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLCFESGVEKGIWMQSSLTGEVVMTAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLLFGDPPVSD-GDMQAGLIKLRKHREQMHARVAREA----RMPPKRQPGAHRAGKV 159
            + P  +T   SL     L C+L PPL  NFL L         I M SS++ +++ T++    GSM ++ F+ N F    P+ +L      ++N  +R L+LL     +  D   SD  D    LI+  + ++Q      R A    R    R  GA  AGK+
Sbjct:  439 LVPHHQTDSYSLLFSGMLFCRLTPPLCLNFLGL---------IHMDSSVSQQIIPTSYTSVMGSMSLLSFISNGFYIYYPMLILLLCFATYYNFGSRCLNLLGFHQYISDDEITSDLVDEGKDLIRRERRKKQKMEGDNRGATWRERYAEDRN-GATTAGKI 590          
BLAST of EWM28367.1 vs. NCBI_GenBank
Match: gi|1001608403|gb|KXS12200.1| (LMBR1-domain-containing protein, partial [Gonapodya prolifera JEL478])

HSP 1 Score: 62.7734 bits (151), Expect = 6.971e-7
Identity = 38/122 (31.15%), Postives = 52/122 (42.62%), Query Frame = 0
Query:    3 IAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLCFESGVEKGIWMQSSLTGEVVMTAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLLF--GDPPVSDGDMQ 122
            + P   T   S+   A   C+L  PL YNFL L         +    S       T F R  G +D++P +G  FN   PL ++    + FFNV  RLL +    G +F   D P  D  M+
Sbjct:  814 LVPDHHTDEGSMLFFAAYFCRLNFPLCYNFLNL---------LTTADSANTPATATTFVRVIGKIDLVPLLGGEFNLYFPLVIVVICAVVFFNVHGRLLRMCGGFGDMFFDDDEPAEDIIME 926          
BLAST of EWM28367.1 vs. NCBI_GenBank
Match: gi|674577124|emb|CDS37568.1| (LMBR1 domain containing protein 2 [Echinococcus multilocularis])

HSP 1 Score: 62.3882 bits (150), Expect = 7.280e-7
Identity = 51/189 (26.98%), Postives = 78/189 (41.27%), Query Frame = 0
Query:    3 IAPGRKTSPKSLSCHARLSCKLAPPLAYNFLTLC-FESGVEKG------------------------IWMQSSLTGEVVMTAFGRFYGSMDIIPFVGNNFNRIVPLFVLFFAGLQFFNVFNRLLSLLHLSGLL---FGD--------PPVSDGDMQAGLIKLRKHREQMHARVAREARMPPKRQPGAHR 155
            + P   +   SL  +  + C+L P L  NFL L   +S V                             + SS T     TAF +F G +D++PF+ N FN   P+ V+    + FF++ +RLL+ L +  L+   F D         PV D  ++ G  ++  +RE+   R  R AR      P  HR
Sbjct:  356 LVPNHHSDAISLIFYGYMLCRLTPSLCVNFLCLAHLDSHVISASVDTTSAVTNKNSTVATTANVTTNTTIPSSATSAYYETAFTKFMGHLDVVPFIANGFNIYFPIIVVLLCLVTFFSLGSRLLTCLGMPQLIGPSFIDKRLPAGESSPVDDA-IEDG--RMLLYRERTLGRTRRFARNATISVPSTHR 541          
The following BLAST results are available for this feature:
BLAST of EWM28367.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585110735|gb|EWM28367.1|0.000e+0100.00Pleckstrin -like protein [Nannochloropsis gaditana... [more]
gi|923128197|ref|XP_013757565.1|3.975e-1135.48LMBR1 domain-containing protein 2-B [Thecamonas tr... [more]
gi|1192744415|ref|XP_021002805.1|1.763e-832.59LMBR1 domain-containing protein 2-like [Parasteato... [more]
gi|470476175|ref|XP_004342231.1|1.193e-725.71LMBR1 domain containing protein [Acanthamoeba cast... [more]
gi|1032725839|ref|XP_016842162.1|3.824e-731.61PREDICTED: LMBR1 domain-containing protein 2 homol... [more]
gi|1188102617|ref|XP_020773046.1|4.056e-729.63LMBR1 domain-containing protein 2-B-like [Boleopht... [more]
gi|1001608403|gb|KXS12200.1|6.971e-731.15LMBR1-domain-containing protein, partial [Gonapody... [more]
gi|674577124|emb|CDS37568.1|7.280e-726.98LMBR1 domain containing protein 2 [Echinococcus mu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2312rna2312Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications