rna2304, rna2304 (mRNA) Nannochloropsis gaditana

Overview
Namerna2304
Unique Namerna2304
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length559
Alignment locationCM002459.1:73012..73415 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102854g1.10508.mrna
Orig protein idgnl|cribi|Naga_102854g1.10508
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:73012..73415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102854g1gene2200Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2304rna2304-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28377.1cds2296Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2304 ID=rna2304|Name=rna2304|organism=Nannochloropsis gaditana|type=mRNA|length=559bp
CTCCCTCTCTCCCTCCATCCCACCCTCCTCCTCCGGCTTCTATCCTTTCC
AGGTCCGGGCCCTCAACGTGGCTCGTCGAGGTCGGGGCGGTATCGTCGAG
TTCCTCCAGAAAGCCGTCACCCCCCCCACGGACACAGCCATGTCCAACGC
CCTTGAACTCCTCTTGCACATTGGGGCTATCCAACCGGATGAGCACCTGA
CCTCGCTGGGCAAGTGCCTGGCCACCCTCCCCGTGGAGCCCACCATCGGG
AAAGCCCTCATCTACGGCGTCCTTCTCCGGTGCCTGGACCCAGTCTTGAC
GATCGTCTCTCTGCTCTCGACCAAGAGCCCCTTCGTCCTCCCCCTCGAAC
GTAAGGACGAGGCCGCTCGTTCCAAGATTCAGCTGGCAGGAGGAGAAGCC
TCCGACCACAAGGCCTTGCTGAGTGCCTACGATGGTTGGAAGGAAGCCGA
AATGCGTGGCCAGGGCCGTGACTTTGCGTGGCGGAATTTTTTGTCCGGGC
CCACCCTTGTAATGGTGGACGACATGCGGAAGCAGTTTTTGACGCTACTC
AAGGACGCC
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protein sequence of rna2304

>rna2304-protein ID=rna2304-protein|Name=rna2304|organism=Nannochloropsis gaditana|type=polypeptide|length=88bp
MRHLPSHVRERLESQHPQFAPYMLPEEKAARREAEKKNRQLFDENPGVLD
IPLREGEALHAATQVGNPSLSIRPSSSLSLFLPFLPPL
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mRNA from alignment at CM002459.1:73012..73415-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2304 ID=rna2304|Name=rna2304|organism=Nannochloropsis gaditana|type=mRNA|length=404bp|location=Sequence derived from alignment at CM002459.1:73012..73415- (Nannochloropsis gaditana)
AGGGGAGGCGACCAAGGTTGGATGAGGCATCTACCATCACACGTTCGTGA
GCGTTTGGAGTCGCAGCATCCGCAATTTGCACCGTACATGCTCCCTGAAG
AGAAGGCGGTATGTGTATGCGGGGTGGGGGGTGCGGGGAGGAAGGGAGGA
GGTTGTGGCGTGATGGGGCGATGCCCGCTTACTACACAGGATTCGTTTGA
CGCACGACCCACACGCTGTTTTAGGCGCGTCGAGAGGCGGAGAAAAAAAA
TCGACAGCTCTTCGATGAGAATCCTGGTGTGCTCGACATTCCGCTGCGAG
AAGGCGAGGCCCTCCATGCTGCCACCCAGGTCGGTAATCCCTCCCTCTCC
ATTCGTCCCTCCTCATCCCTGTCGCTTTTCCTGCCCTTCTTGCCCCCTCT
TTGA
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Coding sequence (CDS) from alignment at CM002459.1:73012..73415-

>rna2304 ID=rna2304|Name=rna2304|organism=Nannochloropsis gaditana|type=CDS|length=534bp|location=Sequence derived from alignment at CM002459.1:73012..73415- (Nannochloropsis gaditana)
GCGCGTCGAGAGGCGGAGAAAAAAAATCGACAGCTCTTCGATGAGAATCC
TGGTGTGCTCGACATTCCGCTGCGAGAAGGCGAGGCCCTCCATGCTGCCA
CCCAGGTCGGTAATCCCTCCCTCTCCATTCGTCCCTCCTCATCCCTGTCG
CTTTTCCTGCCCTTCTTGCCCCCTCTTTGAATGAGGCATCTACCATCACA
CGTTCGTGAGCGTTTGGAGTCGCAGCATCCGCAATTTGCACCGTACATGC
TCCCTGAAGAGAAGGCGGCGCGTCGAGAGGCGGAGAAAAAAAATCGACAG
CTCTTCGATGAGAATCCTGGTGTGCTCGACATTCCGCTGCGAGAAGGCGA
GGCCCTCCATGCTGCCACCCAGGTCGGTAATCCCTCCCTCTCCATTCGTC
CCTCCTCATCCCTGTCGCTTTTCCTGCCCTTCTTGCCCCCTCTTTGAATG
AGGCATCTACCATCACACGTTCGTGAGCGTTTGGAGTCGCAGCATCCGCA
ATTTGCACCGTACATGCTCCCTGAAGAGAAGGCG
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Synonyms
Publications