rna2303, rna2303 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2303
Unique Name	rna2303
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1375
Alignment location	CM002459.1:69915..71439 -

Link to JBrowse

Properties


Property Name	Value
Product	putative atp-dependent rna helicase dhx36
Orig transcript id	gnl\|cribi\|Naga_101847g1.10058.mrna
Orig protein id	gnl\|cribi\|Naga_101847g1.10058
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:69915..71439 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101847g1	gene2199	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2303	rna2303-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28378.1	cds2295	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:69915..71439-
coding sequence from alignment at CM002459.1:69915..71439-

mRNA sequence

>rna2303 ID=rna2303|Name=rna2303|organism=Nannochloropsis gaditana|type=mRNA|length=1375bp
CTTCCCTGCCTGCCGTCCTGCTTCGTGTTCTCCCCCCGTCGCCCTCCTCC
CTTTCTCGTTCGACCTTGTATTTTCGCGCCTCCCTTTCTCATTACATTTT
TGGGAAGAGTCTTGCTCGTTCCACCCTGGCCTTTTCTTTTTTGGCACGCC
CTGCTTTCACTTTCGTCGGCCTTCCTCCCCCCTCTAACTCCTCATGTGGG
CCGTCCCAGCACCAGCCCTCACTCACGCTCACGCCTTCCCTCCCTCCCTC
CCTCCTCCTCCTCTTTCTCAGGACCTGATGCCGCAGGGGCACGAGGAATT
CATCGCCACCCTCTGTCGATGTTTGGAGACTGTGGAGGGGGACGGCGAGA
AGATCGACGTAGGGCGGGGGGGAGGGAGGGATGGAGGGCAAGGGCCCTAC
AGGGGAGGGCAAACGTGTCAGGAGTGGTCTCACCAATGTTCGCCTTCCTC
TTCATTTCTCCAGATACACCCCTCGCTACAGGGAGTCAGGGATCGGATCG
CCCCCCTCGTGCAAGCAGAGGCCCTGGCAGCCGACGGGAACGGCCATTCC
GGAGTAGGGGGAGGGAGGGAAACAAGCCGATGGGACGGAGGAGGAGGGGG
AGGGGGCACTCCCGCTCCCTCCCCGCCCTCCTCAGCCTCTGTGCAAGCCC
CCATCGGCAAGGGAACAGGGATGGGGACGTTGGGCGGGGGCCGGCTTGGA
ATTAACGGCCGGGAAAGTGAATCTAACGGTCGCGTAACGGCCGTTTCGTC
ATCCACTATCTCCGCGGCCCCGATGTTGAATGCTGCCGTGATGGCAGCAA
GGGCAAAGATAGCTGCGGCGACGGGACCAGAAGGAGGGTCGTCAATGCAT
TCTACAAGAAGCAGCAGCAGGCTTGTGGATGAAGGCGGGGGAGGGAGGAG
GGAAAGGGAGGAGAGTGACAAGCCCCCATCCAAACCTGCCTCCCCGGCTA
CGTCCCGCTACCGGAGCAGCGAGCGGGAAAGGGGGAGCCGACGGTCGTCC
GAACGGAACGGGAGCCGGCGTCAGGACGGTGGTTCTGCGGGAAGTAGTAG
GCGAAGACCGCAGGTGGAGGAGGACGAGAGGTATCAGCCTCGATCGCGGT
CGCGTTCGCGCTCGGCTTCTCCCTACCGGCGGTCAAGAAGGAGTTCCCGG
CGATCCCAGGAAAGGGGAGGGAGTTACAGACGGTATTGAGGAGGGTGGTG
GATGATTTGGAGGGAAGAGCTATCGGGCGGGGAAGGAAGTGGCGTGAGGT
GCCTGGAGCTGCACTAGGAAGAGGAAGGCAAGGGGGGATATGAAACAAGC
AAAGCTCGCAAGCACATTTTCAAGGGTTGTTATCCCGAACAATTGTTCTT
CTGTTCTGTTTTGTTAATGATGCCC

protein sequence of rna2303

>rna2303-protein ID=rna2303-protein|Name=rna2303|organism=Nannochloropsis gaditana|type=polypeptide|length=140bp
MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLD
PVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGW
KEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKDA

mRNA from alignment at CM002459.1:69915..71439-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2303 ID=rna2303|Name=rna2303|organism=Nannochloropsis gaditana|type=mRNA|length=1525bp|location=Sequence derived from alignment at CM002459.1:69915..71439- (Nannochloropsis gaditana)
CTCCCTCTCTCCCTCCATCCCACCCTCCTCCTCCGGCTTCTATCCTTTCC
AGGTCCGGGCCCTCAACGTGGCTCGTCGAGGTCGGGGCGGTATCGTCGAG
TTCCTCCAGAAAGCCGTCACCCCCCCCACGGACACAGCCATGTCCAACGC
CCTTGAACTCCTCTTGCACATTGGTAGAATACTCGTCCCGCCCGCCCGCC
CTCCCTCCCTCCCTCCCTCTTGCTCGGCCTGCCGCCGCCGAGCTTCTCTA
ACTCTGCTTCGGGCACGCTCACCCGTCCAACTCGAAACGTCATTCCCCGT
CTTTTAACCCTCCTTCCCTCTTTCCTTCCCACCCTCCTTCCCTCTCTCCT
TTTCCCCTTTCAGGGGCTATCCAACCGGATGAGCACCTGACCTCGCTGGG
CAAGTGCCTGGCCACCCTCCCCGTGGAGCCCACCATCGGGAAAGCCCTCA
TCTACGGCGTCCTTCTCCGGTATTCAAACCTCTGACTTCTCTCCCTCCCT
TTTCCCTTTCCACACGCCCCGTCCATGTTTTTTTTTTTGCTTTTTCTCCC
TCTTTATAGGTCCTCCTTTTTCTATGTCTTCTTCTCTTCGTTTTGGATTC
TTCTCTACCCACCGCGTTTCCCCTCTCTATTTCCTTCCTCTCTCTAGCCT
TGTTGCCCTACTCTTCCTCCGTCTCGCTTTGTCGCCCCTAAACGCCTCCG
TGGTGGCGCAATGTGCGCTCACCAGGACCTGCCTTCCCTCCCTCCCTCCC
TCCCCCTCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTATTCTTCCCCTCC
TCATAGGTGCCTGGACCCAGTCTTGACGATCGTCTCTCTGCTCTCGACCA
AGAGCCCCTTCGTCCTCCCCCTCGGTACCCTCCCTCCCTCCCTCCCTCCC
GCCCTCGCCCCGCGATCCACCCCTCTCATTTCCTCCCTTCCTTTTCTATC
TCCCTTCTGTTTCCCTTCTAGAACGTAAGGACGAGGCCGCTCGTTCCAAG
ATTCAGCTGGCAGGAGGAGAAGCCTCCGACCACAAGGCATGCGGCGGGAG
GGAGGGAGAGACGGAGGAAGGAGGGAGGGAGGGAAAGCGGAGGAGAGGAT
ACGGGTCATTTCGATGGAATTGCATCCCTACATTCCTCAAGGAACCATCC
TGGAATGTCTTTGCACCTTCCCCCGACGCTTTCTTGCCCATTAAAGCCCC
CCCCCCCTTCCTCCCCCTTCTCCCTCCATCCCTCTCTCCTCCCTCTCCCT
TCCTCCCTCCCTTTCTCCTCCCCTCCCTCCTTCAGGCCTTGCTGAGTGCC
TACGATGGTTGGAAGGAAGCCGAAATGCGTGGCCAGGGCCGTGACTTTGC
GTGGCGGAATTTTTTGTCCGGGCCCACCCTTGTAATGGTGAGGAAGGAGG
GAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGACGGGAGGAAGAGACGGG
AATTGCTCATGGAATGAGACCTAAACATAGGTGGACGACATGCGGAAGCA
GTTTTTGACGCTACTCAAGGACGCC

Coding sequence (CDS) from alignment at CM002459.1:69915..71439-

>rna2303 ID=rna2303|Name=rna2303|organism=Nannochloropsis gaditana|type=CDS|length=2520bp|location=Sequence derived from alignment at CM002459.1:69915..71439- (Nannochloropsis gaditana)
GTGGACGACATGCGGAAGCAGTTTTTGACGCTACTCAAGGACGCCGCCTT
GCTGAGTGCCTACGATGGTTGGAAGGAAGCCGAAATGCGTGGCCAGGGCC
GTGACTTTGCGTGGCGGAATTTTTTGTCCGGGCCCACCCTTGTAATGAAC
GTAAGGACGAGGCCGCTCGTTCCAAGATTCAGCTGGCAGGAGGAGAAGCC
TCCGACCACAAGGTGCCTGGACCCAGTCTTGACGATCGTCTCTCTGCTCT
CGACCAAGAGCCCCTTCGTCCTCCCCCTCGGGGCTATCCAACCGGATGAG
CACCTGACCTCGCTGGGCAAGTGCCTGGCCACCCTCCCCGTGGAGCCCAC
CATCGGGAAAGCCCTCATCTACGGCGTCCTTCTCCGATGTCCAACGCCCT
TGAACTCCTCTTGCACATTGGTGGACGACATGCGGAAGCAGTTTTTGACG
CTACTCAAGGACGCCGCCTTGCTGAGTGCCTACGATGGTTGGAAGGAAGC
CGAAATGCGTGGCCAGGGCCGTGACTTTGCGTGGCGGAATTTTTTGTCCG
GGCCCACCCTTGTAATGAACGTAAGGACGAGGCCGCTCGTTCCAAGATTC
AGCTGGCAGGAGGAGAAGCCTCCGACCACAAGGTGCCTGGACCCAGTCTT
GACGATCGTCTCTCTGCTCTCGACCAAGAGCCCCTTCGTCCTCCCCCTCG
GGGCTATCCAACCGGATGAGCACCTGACCTCGCTGGGCAAGTGCCTGGCC
ACCCTCCCCGTGGAGCCCACCATCGGGAAAGCCCTCATCTACGGCGTCCT
TCTCCGATGTCCAACGCCCTTGAACTCCTCTTGCACATTGGTGGACGACA
TGCGGAAGCAGTTTTTGACGCTACTCAAGGACGCCGCCTTGCTGAGTGCC
TACGATGGTTGGAAGGAAGCCGAAATGCGTGGCCAGGGCCGTGACTTTGC
GTGGCGGAATTTTTTGTCCGGGCCCACCCTTGTAATGAACGTAAGGACGA
GGCCGCTCGTTCCAAGATTCAGCTGGCAGGAGGAGAAGCCTCCGACCACA
AGGTGCCTGGACCCAGTCTTGACGATCGTCTCTCTGCTCTCGACCAAGAG
CCCCTTCGTCCTCCCCCTCGGGGCTATCCAACCGGATGAGCACCTGACCT
CGCTGGGCAAGTGCCTGGCCACCCTCCCCGTGGAGCCCACCATCGGGAAA
GCCCTCATCTACGGCGTCCTTCTCCGATGTCCAACGCCCTTGAACTCCTC
TTGCACATTGGTGGACGACATGCGGAAGCAGTTTTTGACGCTACTCAAGG
ACGCCGCCTTGCTGAGTGCCTACGATGGTTGGAAGGAAGCCGAAATGCGT
GGCCAGGGCCGTGACTTTGCGTGGCGGAATTTTTTGTCCGGGCCCACCCT
TGTAATGAACGTAAGGACGAGGCCGCTCGTTCCAAGATTCAGCTGGCAGG
AGGAGAAGCCTCCGACCACAAGGTGCCTGGACCCAGTCTTGACGATCGTC
TCTCTGCTCTCGACCAAGAGCCCCTTCGTCCTCCCCCTCGGGGCTATCCA
ACCGGATGAGCACCTGACCTCGCTGGGCAAGTGCCTGGCCACCCTCCCCG
TGGAGCCCACCATCGGGAAAGCCCTCATCTACGGCGTCCTTCTCCGATGT
CCAACGCCCTTGAACTCCTCTTGCACATTGGTGGACGACATGCGGAAGCA
GTTTTTGACGCTACTCAAGGACGCCGCCTTGCTGAGTGCCTACGATGGTT
GGAAGGAAGCCGAAATGCGTGGCCAGGGCCGTGACTTTGCGTGGCGGAAT
TTTTTGTCCGGGCCCACCCTTGTAATGAACGTAAGGACGAGGCCGCTCGT
TCCAAGATTCAGCTGGCAGGAGGAGAAGCCTCCGACCACAAGGTGCCTGG
ACCCAGTCTTGACGATCGTCTCTCTGCTCTCGACCAAGAGCCCCTTCGTC
CTCCCCCTCGGGGCTATCCAACCGGATGAGCACCTGACCTCGCTGGGCAA
GTGCCTGGCCACCCTCCCCGTGGAGCCCACCATCGGGAAAGCCCTCATCT
ACGGCGTCCTTCTCCGATGTCCAACGCCCTTGAACTCCTCTTGCACATTG
GTGGACGACATGCGGAAGCAGTTTTTGACGCTACTCAAGGACGCCGCCTT
GCTGAGTGCCTACGATGGTTGGAAGGAAGCCGAAATGCGTGGCCAGGGCC
GTGACTTTGCGTGGCGGAATTTTTTGTCCGGGCCCACCCTTGTAATGAAC
GTAAGGACGAGGCCGCTCGTTCCAAGATTCAGCTGGCAGGAGGAGAAGCC
TCCGACCACAAGGTGCCTGGACCCAGTCTTGACGATCGTCTCTCTGCTCT
CGACCAAGAGCCCCTTCGTCCTCCCCCTCGGGGCTATCCAACCGGATGAG
CACCTGACCTCGCTGGGCAAGTGCCTGGCCACCCTCCCCGTGGAGCCCAC
CATCGGGAAAGCCCTCATCTACGGCGTCCTTCTCCGATGTCCAACGCCCT
TGAACTCCTCTTGCACATTG

Synonyms

Publications