EWM28378.1, cds2295 (CDS) Nannochloropsis gaditana

Overview
NameEWM28378.1
Unique Namecds2295
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:71267..71300 -
Alignment locationCM002459.1:70971..71076 -
Alignment locationCM002459.1:70566..70633 -
Alignment locationCM002459.1:70404..70468 -
Alignment locationCM002459.1:70053..70154 -
Alignment locationCM002459.1:69915..69959 -

Link to JBrowse

Properties
Property NameValue
Start range69915
Start range.
Protein idEWM28378.1
Productputative atp-dependent rna helicase dhx36
Partialtrue
Orig transcript idgnl|cribi|Naga_101847g1.10058.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:71267..71300 -
CM002459.1supercontigCM002459.1:70971..71076 -
CM002459.1supercontigCM002459.1:70566..70633 -
CM002459.1supercontigCM002459.1:70404..70468 -
CM002459.1supercontigCM002459.1:70053..70154 -
CM002459.1supercontigCM002459.1:69915..69959 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0004386helicase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR007502Helicase-assoc_dom
Homology
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|585110752|gb|EWM28378.1| (putative atp-dependent rna helicase dhx36, partial [Nannochloropsis gaditana])

HSP 1 Score: 285.034 bits (728), Expect = 2.468e-97
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
Query:    1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKDA 140
            MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKDA
Sbjct:    1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKDA 140          
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|604345608|gb|EYU44126.1| (hypothetical protein MIMGU_mgv1a0003881mg, partial [Erythranthe guttata])

HSP 1 Score: 159.073 bits (401), Expect = 2.639e-43
Identity = 74/139 (53.24%), Postives = 100/139 (71.94%), Query Frame = 0
Query:    1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKD 139
            + NA+E L  IGA+   E+LT LG+ L+TLPVEP +GK LIYG +  CLDP+LTIV+ LS + PF++P ++KD A  +K Q +G E SDH AL  A++GW+EAE +  G ++ WRNFLS  TL  +D ++KQFL LLKD
Sbjct:  134 VQNAIEYLKMIGALDESENLTVLGRNLSTLPVEPKLGKMLIYGAMFNCLDPMLTIVAGLSVRDPFLMPFDKKDLAESAKAQFSGREFSDHVALYRAFEGWREAERKQSGYEYCWRNFLSTQTLRAIDSLKKQFLYLLKD 272          
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|848856456|ref|XP_012856923.1| (PREDICTED: ATP-dependent RNA helicase DHX36 [Erythranthe guttata])

HSP 1 Score: 159.844 bits (403), Expect = 1.171e-42
Identity = 74/139 (53.24%), Postives = 100/139 (71.94%), Query Frame = 0
Query:    1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKD 139
            + NA+E L  IGA+   E+LT LG+ L+TLPVEP +GK LIYG +  CLDP+LTIV+ LS + PF++P ++KD A  +K Q +G E SDH AL  A++GW+EAE +  G ++ WRNFLS  TL  +D ++KQFL LLKD
Sbjct:  756 VQNAIEYLKMIGALDESENLTVLGRNLSTLPVEPKLGKMLIYGAMFNCLDPMLTIVAGLSVRDPFLMPFDKKDLAESAKAQFSGREFSDHVALYRAFEGWREAERKQSGYEYCWRNFLSTQTLRAIDSLKKQFLYLLKD 894          
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|629079305|gb|KCW46004.1| (hypothetical protein EUGRSUZ_L000641, partial [Eucalyptus grandis])

HSP 1 Score: 150.599 bits (379), Expect = 2.042e-42
Identity = 70/140 (50.00%), Postives = 100/140 (71.43%), Query Frame = 0
Query:    1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKDA 140
            + NA+E L  IGA+  +E+LT LG+ L+ LPVEP +GK LI G +  CLDPV++IV+ LS + PF++P ++KD A  +K Q +G + SDH AL  AYDGW++AE +  G ++ WRNFLS  T+  +  +RKQFL+LLKD+
Sbjct:  115 VQNAVEYLKVIGALDENENLTVLGRQLSMLPVEPKLGKMLILGAIFNCLDPVMSIVAGLSVRDPFLMPFDKKDLAESAKAQFSGRDYSDHLALARAYDGWRDAERQQAGYEYCWRNFLSVQTMKAIGSLRKQFLSLLKDS 254          
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|10716617|gb|AAG21915.1|AC026815_19 (putative ATP-dependent RNA helicase (5'-partial), partial [Oryza sativa Japonica Group])

HSP 1 Score: 152.14 bits (383), Expect = 2.073e-42
Identity = 73/139 (52.52%), Postives = 96/139 (69.06%), Query Frame = 0
Query:    1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKD 139
            ++NA+ELL  +GA+   E LTSLG+ L TLP++P IGK L+ G + +CLDP LTI + L+ ++PFVLP++RK+EA   K   AG   SDH AL+ A++ WKEA   G+ R F W NFLS  TL M+DDMR QF  LL D
Sbjct:   23 VNNAIELLKTVGALDDVEELTSLGRHLCTLPLDPNIGKMLLIGSVFQCLDPALTIAAALAYRNPFVLPIDRKEEADAVKRSFAGDSCSDHIALVKAFEAWKEARRSGRERSFCWENFLSPMTLQMMDDMRNQFFDLLSD 161          
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|970017252|ref|XP_015069753.1| (PREDICTED: ATP-dependent RNA helicase DHX36 [Solanum pennellii])

HSP 1 Score: 158.688 bits (400), Expect = 2.399e-42
Identity = 75/139 (53.96%), Postives = 99/139 (71.22%), Query Frame = 0
Query:    1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKD 139
            + NA+E L  IGA+  DE+LT LG  L+ LPVEP +GK +I GV+  CLDPVLT+V+ LS + PF++P ++KD A  +K Q +  + SDH AL+ AYDGWK+AE +  G D+ WRNFLS  TL  +D +RKQFL LLKD
Sbjct:  762 VQNAIEYLKTIGALDEDENLTVLGHNLSMLPVEPKLGKMIILGVVFNCLDPVLTVVAGLSARDPFLMPFDKKDLAESAKAQFSARDFSDHLALVRAYDGWKDAERQQSGYDYCWRNFLSAQTLKAMDSLRKQFLYLLKD 900          
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|460380006|ref|XP_004235749.1| (PREDICTED: DExH-box ATP-dependent RNA helicase DExH3 [Solanum lycopersicum])

HSP 1 Score: 158.688 bits (400), Expect = 2.543e-42
Identity = 75/139 (53.96%), Postives = 99/139 (71.22%), Query Frame = 0
Query:    1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKD 139
            + NA+E L  IGA+  DE+LT LG  L+ LPVEP +GK +I GV+  CLDPVLT+V+ LS + PF++P ++KD A  +K Q +  + SDH AL+ AYDGWK+AE +  G D+ WRNFLS  TL  +D +RKQFL LLKD
Sbjct:  763 VQNAIEYLKTIGALDEDENLTVLGHNLSMLPVEPKLGKMIILGVVFNCLDPVLTVVAGLSARDPFLMPFDKKDLAESAKAQFSARDFSDHLALVRAYDGWKDAERQQSGYDYCWRNFLSAQTLKAMDSLRKQFLYLLKD 901          
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|470130757|ref|XP_004301269.1| (PREDICTED: ATP-dependent RNA helicase DHX36 [Fragaria vesca subsp. vesca])

HSP 1 Score: 157.532 bits (397), Expect = 6.708e-42
Identity = 74/140 (52.86%), Postives = 99/140 (70.71%), Query Frame = 0
Query:    1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKDA 140
            + NA++ L  IGA+  +E LT LG+ L+TLPVEP +GK LI G +  CLDP++TIV+ LS + PF++P ++KD A  +K Q AG ++SDH AL+ AYDGWK AE    G ++ WRNFLS  TL  +D +RKQF  LLKDA
Sbjct:  769 VQNAVDYLKIIGALDENEDLTVLGRHLSTLPVEPKLGKMLILGAIFNCLDPIMTIVAGLSMRDPFMMPYDKKDLAESAKAQFAGRDSSDHLALIRAYDGWKNAERSQSGYEYCWRNFLSAQTLKAIDSLRKQFFFLLKDA 908          
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|1191680506|gb|OTG32469.1| (putative DEA(D/H)-box RNA helicase family protein [Helianthus annuus])

HSP 1 Score: 157.532 bits (397), Expect = 8.230e-42
Identity = 71/140 (50.71%), Postives = 101/140 (72.14%), Query Frame = 0
Query:    1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKDA 140
            + NA+E L  IGA+  +E+LT LG+ L+ LPVEP +GK LI G +  CLDP++T+V+ LS + PF++P ++KD A  +K Q +GG+ SDH ALL AYDGWK AE +  G+++ WRNFLS  TL  +D +RKQF  LL+++
Sbjct:  737 VQNAIEYLKIIGALDDNENLTVLGRKLSVLPVEPKLGKMLILGAIFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSGGDNSDHFALLRAYDGWKAAERQQSGQEYCWRNFLSSQTLRAIDSLRKQFYYLLRES 876          
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|1137172315|gb|OMO51588.1| (Double-stranded RNA-binding protein [Corchorus capsularis])

HSP 1 Score: 157.147 bits (396), Expect = 9.731e-42
Identity = 72/140 (51.43%), Postives = 99/140 (70.71%), Query Frame = 0
Query:    1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKDA 140
            + NA+E L  IGA+  +E+LT+LG+ L+ LPVEP +GK LI G +  CLDP++TIV+ LS + PF++P ++KD A  +K Q +G E SDH AL+ AY+GWKEAE    G ++ W+NFLS  TL  +D +RKQF  LLKD 
Sbjct:  876 VQNAVEYLKIIGALDENENLTALGRNLSMLPVEPKLGKMLIMGAIFNCLDPIMTIVAGLSVRDPFLMPFDKKDLAESAKAQFSGQEYSDHIALVRAYEGWKEAERERSGYEYCWKNFLSAQTLKAIDSLRKQFFYLLKDT 1015          
The following BLAST results are available for this feature:
BLAST of EWM28378.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110752|gb|EWM28378.1|2.468e-97100.00putative atp-dependent rna helicase dhx36, partial... [more]
gi|604345608|gb|EYU44126.1|2.639e-4353.24hypothetical protein MIMGU_mgv1a0003881mg, partial... [more]
gi|848856456|ref|XP_012856923.1|1.171e-4253.24PREDICTED: ATP-dependent RNA helicase DHX36 [Eryth... [more]
gi|629079305|gb|KCW46004.1|2.042e-4250.00hypothetical protein EUGRSUZ_L000641, partial [Euc... [more]
gi|10716617|gb|AAG21915.1|AC026815_192.073e-4252.52putative ATP-dependent RNA helicase (5'-partial), ... [more]
gi|970017252|ref|XP_015069753.1|2.399e-4253.96PREDICTED: ATP-dependent RNA helicase DHX36 [Solan... [more]
gi|460380006|ref|XP_004235749.1|2.543e-4253.96PREDICTED: DExH-box ATP-dependent RNA helicase DEx... [more]
gi|470130757|ref|XP_004301269.1|6.708e-4252.86PREDICTED: ATP-dependent RNA helicase DHX36 [Fraga... [more]
gi|1191680506|gb|OTG32469.1|8.230e-4250.71putative DEA(D/H)-box RNA helicase family protein ... [more]
gi|1137172315|gb|OMO51588.1|9.731e-4251.43Double-stranded RNA-binding protein [Corchorus cap... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2303rna2303Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications