EWM28378.1, cds2295 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|585110752|gb|EWM28378.1| (putative atp-dependent rna helicase dhx36, partial [Nannochloropsis gaditana]) HSP 1 Score: 285.034 bits (728), Expect = 2.468e-97 Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0
Query: 1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKDA 140
MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKDA
Sbjct: 1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKDA 140
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|604345608|gb|EYU44126.1| (hypothetical protein MIMGU_mgv1a0003881mg, partial [Erythranthe guttata]) HSP 1 Score: 159.073 bits (401), Expect = 2.639e-43 Identity = 74/139 (53.24%), Postives = 100/139 (71.94%), Query Frame = 0
Query: 1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKD 139
+ NA+E L IGA+ E+LT LG+ L+TLPVEP +GK LIYG + CLDP+LTIV+ LS + PF++P ++KD A +K Q +G E SDH AL A++GW+EAE + G ++ WRNFLS TL +D ++KQFL LLKD
Sbjct: 134 VQNAIEYLKMIGALDESENLTVLGRNLSTLPVEPKLGKMLIYGAMFNCLDPMLTIVAGLSVRDPFLMPFDKKDLAESAKAQFSGREFSDHVALYRAFEGWREAERKQSGYEYCWRNFLSTQTLRAIDSLKKQFLYLLKD 272
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|848856456|ref|XP_012856923.1| (PREDICTED: ATP-dependent RNA helicase DHX36 [Erythranthe guttata]) HSP 1 Score: 159.844 bits (403), Expect = 1.171e-42 Identity = 74/139 (53.24%), Postives = 100/139 (71.94%), Query Frame = 0
Query: 1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKD 139
+ NA+E L IGA+ E+LT LG+ L+TLPVEP +GK LIYG + CLDP+LTIV+ LS + PF++P ++KD A +K Q +G E SDH AL A++GW+EAE + G ++ WRNFLS TL +D ++KQFL LLKD
Sbjct: 756 VQNAIEYLKMIGALDESENLTVLGRNLSTLPVEPKLGKMLIYGAMFNCLDPMLTIVAGLSVRDPFLMPFDKKDLAESAKAQFSGREFSDHVALYRAFEGWREAERKQSGYEYCWRNFLSTQTLRAIDSLKKQFLYLLKD 894
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|629079305|gb|KCW46004.1| (hypothetical protein EUGRSUZ_L000641, partial [Eucalyptus grandis]) HSP 1 Score: 150.599 bits (379), Expect = 2.042e-42 Identity = 70/140 (50.00%), Postives = 100/140 (71.43%), Query Frame = 0
Query: 1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKDA 140
+ NA+E L IGA+ +E+LT LG+ L+ LPVEP +GK LI G + CLDPV++IV+ LS + PF++P ++KD A +K Q +G + SDH AL AYDGW++AE + G ++ WRNFLS T+ + +RKQFL+LLKD+
Sbjct: 115 VQNAVEYLKVIGALDENENLTVLGRQLSMLPVEPKLGKMLILGAIFNCLDPVMSIVAGLSVRDPFLMPFDKKDLAESAKAQFSGRDYSDHLALARAYDGWRDAERQQAGYEYCWRNFLSVQTMKAIGSLRKQFLSLLKDS 254
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|10716617|gb|AAG21915.1|AC026815_19 (putative ATP-dependent RNA helicase (5'-partial), partial [Oryza sativa Japonica Group]) HSP 1 Score: 152.14 bits (383), Expect = 2.073e-42 Identity = 73/139 (52.52%), Postives = 96/139 (69.06%), Query Frame = 0
Query: 1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKD 139
++NA+ELL +GA+ E LTSLG+ L TLP++P IGK L+ G + +CLDP LTI + L+ ++PFVLP++RK+EA K AG SDH AL+ A++ WKEA G+ R F W NFLS TL M+DDMR QF LL D
Sbjct: 23 VNNAIELLKTVGALDDVEELTSLGRHLCTLPLDPNIGKMLLIGSVFQCLDPALTIAAALAYRNPFVLPIDRKEEADAVKRSFAGDSCSDHIALVKAFEAWKEARRSGRERSFCWENFLSPMTLQMMDDMRNQFFDLLSD 161
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|970017252|ref|XP_015069753.1| (PREDICTED: ATP-dependent RNA helicase DHX36 [Solanum pennellii]) HSP 1 Score: 158.688 bits (400), Expect = 2.399e-42 Identity = 75/139 (53.96%), Postives = 99/139 (71.22%), Query Frame = 0
Query: 1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKD 139
+ NA+E L IGA+ DE+LT LG L+ LPVEP +GK +I GV+ CLDPVLT+V+ LS + PF++P ++KD A +K Q + + SDH AL+ AYDGWK+AE + G D+ WRNFLS TL +D +RKQFL LLKD
Sbjct: 762 VQNAIEYLKTIGALDEDENLTVLGHNLSMLPVEPKLGKMIILGVVFNCLDPVLTVVAGLSARDPFLMPFDKKDLAESAKAQFSARDFSDHLALVRAYDGWKDAERQQSGYDYCWRNFLSAQTLKAMDSLRKQFLYLLKD 900
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|460380006|ref|XP_004235749.1| (PREDICTED: DExH-box ATP-dependent RNA helicase DExH3 [Solanum lycopersicum]) HSP 1 Score: 158.688 bits (400), Expect = 2.543e-42 Identity = 75/139 (53.96%), Postives = 99/139 (71.22%), Query Frame = 0
Query: 1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKD 139
+ NA+E L IGA+ DE+LT LG L+ LPVEP +GK +I GV+ CLDPVLT+V+ LS + PF++P ++KD A +K Q + + SDH AL+ AYDGWK+AE + G D+ WRNFLS TL +D +RKQFL LLKD
Sbjct: 763 VQNAIEYLKTIGALDEDENLTVLGHNLSMLPVEPKLGKMIILGVVFNCLDPVLTVVAGLSARDPFLMPFDKKDLAESAKAQFSARDFSDHLALVRAYDGWKDAERQQSGYDYCWRNFLSAQTLKAMDSLRKQFLYLLKD 901
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|470130757|ref|XP_004301269.1| (PREDICTED: ATP-dependent RNA helicase DHX36 [Fragaria vesca subsp. vesca]) HSP 1 Score: 157.532 bits (397), Expect = 6.708e-42 Identity = 74/140 (52.86%), Postives = 99/140 (70.71%), Query Frame = 0
Query: 1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKDA 140
+ NA++ L IGA+ +E LT LG+ L+TLPVEP +GK LI G + CLDP++TIV+ LS + PF++P ++KD A +K Q AG ++SDH AL+ AYDGWK AE G ++ WRNFLS TL +D +RKQF LLKDA
Sbjct: 769 VQNAVDYLKIIGALDENEDLTVLGRHLSTLPVEPKLGKMLILGAIFNCLDPIMTIVAGLSMRDPFMMPYDKKDLAESAKAQFAGRDSSDHLALIRAYDGWKNAERSQSGYEYCWRNFLSAQTLKAIDSLRKQFFFLLKDA 908
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|1191680506|gb|OTG32469.1| (putative DEA(D/H)-box RNA helicase family protein [Helianthus annuus]) HSP 1 Score: 157.532 bits (397), Expect = 8.230e-42 Identity = 71/140 (50.71%), Postives = 101/140 (72.14%), Query Frame = 0
Query: 1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKDA 140
+ NA+E L IGA+ +E+LT LG+ L+ LPVEP +GK LI G + CLDP++T+V+ LS + PF++P ++KD A +K Q +GG+ SDH ALL AYDGWK AE + G+++ WRNFLS TL +D +RKQF LL+++
Sbjct: 737 VQNAIEYLKIIGALDDNENLTVLGRKLSVLPVEPKLGKMLILGAIFNCLDPIMTVVAGLSVRDPFLMPFDKKDLAESAKAQFSGGDNSDHFALLRAYDGWKAAERQQSGQEYCWRNFLSSQTLRAIDSLRKQFYYLLRES 876
BLAST of EWM28378.1 vs. NCBI_GenBank
Match: gi|1137172315|gb|OMO51588.1| (Double-stranded RNA-binding protein [Corchorus capsularis]) HSP 1 Score: 157.147 bits (396), Expect = 9.731e-42 Identity = 72/140 (51.43%), Postives = 99/140 (70.71%), Query Frame = 0
Query: 1 MSNALELLLHIGAIQPDEHLTSLGKCLATLPVEPTIGKALIYGVLLRCLDPVLTIVSLLSTKSPFVLPLERKDEAARSKIQLAGGEASDHKALLSAYDGWKEAEMRGQGRDFAWRNFLSGPTLVMVDDMRKQFLTLLKDA 140
+ NA+E L IGA+ +E+LT+LG+ L+ LPVEP +GK LI G + CLDP++TIV+ LS + PF++P ++KD A +K Q +G E SDH AL+ AY+GWKEAE G ++ W+NFLS TL +D +RKQF LLKD
Sbjct: 876 VQNAVEYLKIIGALDENENLTALGRNLSMLPVEPKLGKMLIMGAIFNCLDPIMTIVAGLSVRDPFLMPFDKKDLAESAKAQFSGQEYSDHIALVRAYEGWKEAERERSGYEYCWKNFLSAQTLKAIDSLRKQFFYLLKDT 1015 The following BLAST results are available for this feature:
BLAST of EWM28378.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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