rna2300, rna2300 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2300
Unique Name	rna2300
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	622
Alignment location	CM002459.1:66827..67560 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101161g3.6794.mrna
Orig protein id	gnl\|cribi\|Naga_101161g3.6794
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:66827..67560 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101161g3	gene2196	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2300	rna2300-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28381.1	cds2292	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:66827..67560-
coding sequence from alignment at CM002459.1:66827..67560-

mRNA sequence

>rna2300 ID=rna2300|Name=rna2300|organism=Nannochloropsis gaditana|type=mRNA|length=622bp
GCGCGGCAACCGAGGGAAGGGTCTAGGTCGGCAGGGAACTTCCGTAGTGG
CCCCTACGGACGCGTCCGGTTTGAGTGGGATGCACAAGCATCTGAGCGAG
AGCAGCCTCTCCCTCACGTCCTCCCTCCCGTCCTCGCTGGCCGGGGAGGG
GAAAGGGGGAGGGGCGCGACGACGGCGGGGGCGCCGCAACCACCTGAAAG
ACAAGGGAGGGCCGCAGCAGGCGGTCTCGCATACCCACGGAGGGGGGGGG
GCGTGGGCTCGATTCAGGGAAGCAGAGAGGGAGGGCGGGAAGGAGGGAGG
GTGGAGGAAGGAGCCGAGCCGGTGGCTCCGGCGCTCCTCTTGGTGCCATC
CACCAGCTCCTCCCCGCCCGTGTCGCTGGTCGAAGAGGAGGGACAAGGGG
AGGGTGTGCGCAGCCCGGGAGTGTTGATGGAGCTCTCCACGCCGGCGGAT
GTGAAAGGGTACGAGATGGTGGGCACCCTGTTCAAACGCCGCGGGGGCAT
CGGGCGTCTGCTCGGGTGGAAACCACGCTTGTTTACGCTGTATCGGGGAA
AGCTCTGCTACTACGAGGCGGAGTATTTGGAGGAAGTTGACAACCGACGC
AAGCCCAGGTGATATGGAGCGA

protein sequence of rna2300

>rna2300-protein ID=rna2300-protein|Name=rna2300|organism=Nannochloropsis gaditana|type=polypeptide|length=78bp
MPRSPTNLLPRGVNSYSLEAINTAKSNSSPSPATSTENISSPTSPAASPA
PFAPKSGPVGTCFLHSDPFLPHSLRSSP

mRNA from alignment at CM002459.1:66827..67560-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2300 ID=rna2300|Name=rna2300|organism=Nannochloropsis gaditana|type=mRNA|length=734bp|location=Sequence derived from alignment at CM002459.1:66827..67560- (Nannochloropsis gaditana)
ATGCCACGCTCCCCGACAAATTTGCTGCCTCGTGGCGTCAACTCCTACAG
TCTTGAGGTACGTATATCTTGAACTGTGAATGGAAATGGACGTGTCTGTA
CTTTCATTGGCCGCGTTCTTGGACACCCTGCCGCCTTCGATCCGTGTCCC
GGCGGATCCTCCAGCGCGTTGACACCATCATAAGCTTCCCGTCCCTAGGC
CTTCCTTGGCAGCCAGAACATACTTTTATGCCTTCTTCTGTATCTTTACT
CCTGACTTTTAAAAGATCGCCCCGAGGAATATAATGCAGTACGTGCTTTT
CCCTTTGCTGTCATTGACCCAACCATTGCATCTTCCCTCCCTCCCCCGCT
ACCTTCCCTTCAGGCGATCAATACGGCGAAAAGCAATTCCTCGCCATCTC
CCGCCACAAGTACCGAAAACATCTCCTCCCCTACCTCCCCTGCCGCCTCG
GTACCGAAAGAACGACGGGCCTCGCAACGCTTTGAATGGGATTTCCGCCT
CGACGGAGATCCCCCCCCCCGGGAGTCACCCCGTGCCAGCGCTCAGATCT
CGGAATCAAATTATCCAGAAAAGAATGCGGGACCGGCCCTGCTTTCAACA
CTGTCTAACACCACGTCGCACCGGGCTTCGAGGTCTTCCAGCCTGCTCCC
TTCGCCCCAAAGAGCGGCCCTGTCGGGACATGCTTCCTCCACAGTGACCC
TTTCCTCCCCCACTCCCTCCGCTCCTCACCCTGA

Coding sequence (CDS) from alignment at CM002459.1:66827..67560-

>rna2300 ID=rna2300|Name=rna2300|organism=Nannochloropsis gaditana|type=CDS|length=711bp|location=Sequence derived from alignment at CM002459.1:66827..67560- (Nannochloropsis gaditana)
CCTGCTCCCTTCGCCCCAAAGAGCGGCCCTGTCGGGACATGCTTCCTCCA
CAGTGACCCTTTCCTCCCCCACTCCCTCCGCTCCTCACCCTGAGCGATCA
ATACGGCGAAAAGCAATTCCTCGCCATCTCCCGCCACAAGTACCGAAAAC
ATCTCCTCCCCTACCTCCCCTGCCGCCTCGATGCCACGCTCCCCGACAAA
TTTGCTGCCTCGTGGCGTCAACTCCTACAGTCTTGAGCCTGCTCCCTTCG
CCCCAAAGAGCGGCCCTGTCGGGACATGCTTCCTCCACAGTGACCCTTTC
CTCCCCCACTCCCTCCGCTCCTCACCCTGAGCGATCAATACGGCGAAAAG
CAATTCCTCGCCATCTCCCGCCACAAGTACCGAAAACATCTCCTCCCCTA
CCTCCCCTGCCGCCTCGATGCCACGCTCCCCGACAAATTTGCTGCCTCGT
GGCGTCAACTCCTACAGTCTTGAGCCTGCTCCCTTCGCCCCAAAGAGCGG
CCCTGTCGGGACATGCTTCCTCCACAGTGACCCTTTCCTCCCCCACTCCC
TCCGCTCCTCACCCTGAGCGATCAATACGGCGAAAAGCAATTCCTCGCCA
TCTCCCGCCACAAGTACCGAAAACATCTCCTCCCCTACCTCCCCTGCCGC
CTCGATGCCACGCTCCCCGACAAATTTGCTGCCTCGTGGCGTCAACTCCT
ACAGTCTTGAG

Synonyms

Publications