rna230, rna230 (mRNA) Nannochloropsis gaditana

Overview
Namerna230
Unique Namerna230
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1218
Alignment locationCM002455.1:583024..583608 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100100g10.8921.mrna
Orig protein idgnl|cribi|Naga_100100g10.8921
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:583024..583608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100100g10gene219Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna230rna230-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30453.1cds230Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna230 ID=rna230|Name=rna230|organism=Nannochloropsis gaditana|type=mRNA|length=1218bp
ATGAGACTACTGGTACTTGGTCTCGTGTCCCTCGGGGTCACGGGCTTTGC
CCACACGCACCCTCGTCTGTTGTCCAAGATTCCGGGAGCCAGTCTCAAAG
GACGCCCCTGTTTCGCGGAGCCCCCGTCTGGTCCTACCTCCCGCTCCTTC
TCTCTGCCTCAGAGCCGAACCGCGGCTCTTACATCCGTAGAGCCGAGTGT
GTATAATTTGCAGCCTACGCCGGTTGTAGCGCCGAAACTTTTGGTCAGCA
GACGCGGGGGAGAAGTTGCGACAGCTACTGGATCAGATGCTGGAGTCAAG
CAGACCTTGAAAGTGGGCTCTTTCTTCTTTCTTTGGTATTTGTTCAACAT
CGGCTACAATATCTACAACAAGAAAGCCCTCAATGTGCTGCCGCTGCCGT
GGATGGTGGGTTTGGTCCAGCTCTCTCTCGGCTTGCTTTATGTCTTCCCT
TTGTGGCTCTTTGGGATCCGGAAGGCTCCGAAACTGAGCCTGCAGAACGT
CAAGAACATCCTTCCTGTGGCCGCCATGCATGCCATGGCGCATATTACCG
CGGTCATTTCATTGGGAGCGGGCGCTGTTAGTTTCACACACATCATCAAG
GCTGCTGAACCCGCCTTCACGTCTTTGTTCTCCGCCCTCTTTCTGAAGCA
GTATTTCTCGCCTGTTGTGTATGCCTCCTTAATCCCCGTCATGGGCGGTG
TGGCCATTGCCTCTTTGACCGAACGGAAATTTTCCTGGTTGGCATTCAAT
TCGGCGATGCTTGCCAACACGGCATCCGCAGGGCGGGGCATCTTTGCGAA
AAAAACAATGAGGGAGCCCCAAGGGCAAAACATGGATCCTGCCAACTTGT
ATGCCGTGCTCACCATCCTGGCGACGCTCATCATGGCCCCGGTGGCGTTT
CTCGTGGAGGGTAGCAAGCTCAAACCCGCGTGGGAAGCAGCCCTGGCTGT
GACGAGTCAGAGACAGCTGATCAATTACATTGTGTCGAGTGGTTTGTACT
TTTATCTGTACAATGAGGTCGCTTTCCTGGCGCTGGACTCGGTGCATCCA
GTGACACATGCCGTCGGTAATACAATCAAGCGTGTCGTCATCATCGGCGC
CTCCATCCTGGTGTTCAAGAACCCCGTCACTCTTCAGGGCTACATCGGGT
CCGCAGTGGCGATCGCAGGCGTTCTTCTTTACTCCTTGGCTGTGGAGAGG
ACCAAAAAGCGGAACTGA
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protein sequence of rna230

>rna230-protein ID=rna230-protein|Name=rna230|organism=Nannochloropsis gaditana|type=polypeptide|length=174bp
MKAASTPLSFNLPLFTSPSPFCDSSNDNAIFVCQHRKDEKGMSRATEMRS
PRQFFPAVGICSTLFSIFRISEGQYPRSVTFYVSCPSACGFCAIKVVCVT
NRQRQIDRQEDSEGGRKQWQRRSCVGSAVCLMSVSFSLPTICITCCCVIV
LYSVTVFVLHRQRWCRKRGASSSI
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mRNA from alignment at CM002455.1:583024..583608+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna230 ID=rna230|Name=rna230|organism=Nannochloropsis gaditana|type=mRNA|length=585bp|location=Sequence derived from alignment at CM002455.1:583024..583608+ (Nannochloropsis gaditana)
ATGAAGGCCGCTTCCACACCCCTTTCCTTCAATCTCCCCCTCTttacctc
tccttcccctttttgcGATAGCTCAAATGACAATGCCATCTTCGTCTGCC
AGGTACTCCCTTATGCTTGGCTCTCCAGTCTTCTGATCAAATCATGATGT
GTATCTCGAAAGCATCGCAAAGATGAGAAGGGAATGTCAAGGGCGACCGA
GATGCGTTCACCTAGACAATTTTTTCCTGCCGTTGGCATCTGTAGCACGT
TGTTTTCAATTTTTCGGATATCTGAAGGACAATACCCTAGGAGTGTGACG
TTTTATGTGTCGTGCCCGTCGGCTTGTGGCTTTTGTGCGATCAAAGTTGT
GTGCGTGACAAACAGACAAAGACAGATAGATAGACAGGAGGATAGTGAAG
GCGGACGCAAGCAGTGGCAAAGGAGATCATGTGTTGGGTCTGCTGTGTGT
TTGATGTCGGTGAGTTTCTCGCTCCCCACTATTTGTATTACGTGTTGCTG
CGTCATTGTGCTCTACTCCGTGACTGTGTTTGTTTTACATCGACAGAGGT
GGTGCCGAAAGCGAGGagcgtcctcttccatttga
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Coding sequence (CDS) from alignment at CM002455.1:583024..583608+

>rna230 ID=rna230|Name=rna230|organism=Nannochloropsis gaditana|type=CDS|length=1050bp|location=Sequence derived from alignment at CM002455.1:583024..583608+ (Nannochloropsis gaditana)
ATGAAGGCCGCTTCCACACCCCTTTCCTTCAATCTCCCCCTCTttacctc
tccttcccctttttgcGATAGCTCAAATGACAATGCCATCTTCGTCTGCC
AGCATCGCAAAGATGAGAAGGGAATGTCAAGGGCGACCGAGATGCGTTCA
CCTAGACAATTTTTTCCTGCCGTTGGCATCTGTAGCACGTTGTTTTCAAT
TTTTCGGATATCTGAAGGACAATACCCTAGGAGTGTGACGTTTTATGTGT
CGTGCCCGTCGGCTTGTGGCTTTTGTGCGATCAAAGTTGTGTGCGTGACA
AACAGACAAAGACAGATAGATAGACAGGAGGATAGTGAAGGCGGACGCAA
GCAGTGGCAAAGGAGATCATGTGTTGGGTCTGCTGTGTGTTTGATGTCGG
TGAGTTTCTCGCTCCCCACTATTTGTATTACGTGTTGCTGCGTCATTGTG
CTCTACTCCGTGACTGTGTTTGTTTTACATCGACAGAGGTGGTGCCGAAA
GCGAGGagcgtcctcttccatttgaATGAAGGCCGCTTCCACACCCCTTT
CCTTCAATCTCCCCCTCTttacctctccttcccctttttgcGATAGCTCA
AATGACAATGCCATCTTCGTCTGCCAGCATCGCAAAGATGAGAAGGGAAT
GTCAAGGGCGACCGAGATGCGTTCACCTAGACAATTTTTTCCTGCCGTTG
GCATCTGTAGCACGTTGTTTTCAATTTTTCGGATATCTGAAGGACAATAC
CCTAGGAGTGTGACGTTTTATGTGTCGTGCCCGTCGGCTTGTGGCTTTTG
TGCGATCAAAGTTGTGTGCGTGACAAACAGACAAAGACAGATAGATAGAC
AGGAGGATAGTGAAGGCGGACGCAAGCAGTGGCAAAGGAGATCATGTGTT
GGGTCTGCTGTGTGTTTGATGTCGGTGAGTTTCTCGCTCCCCACTATTTG
TATTACGTGTTGCTGCGTCATTGTGCTCTACTCCGTGACTGTGTTTGTTT
TACATCGACAGAGGTGGTGCCGAAAGCGAGGagcgtcctcttccatttga
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Synonyms
Publications