rna2299, rna2299 (mRNA) Nannochloropsis gaditana

Overview
Namerna2299
Unique Namerna2299
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length201
Alignment locationCM002459.1:65754..66375 -

Link to JBrowse

Properties
Property NameValue
ProductPleckstrin like protein
Orig transcript idgnl|cribi|Naga_102939g1.4294.mrna
Orig protein idgnl|cribi|Naga_102939g1.4294
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:65754..66375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102939g1gene2195Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28382.1cds2291Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2299rna2299-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2299 ID=rna2299|Name=rna2299|organism=Nannochloropsis gaditana|type=mRNA|length=201bp
ATGGGCGTCGGGAAATTCTCGAAGATCGACGTGCAAAAGAGCGTGAAACC
GCGTGTGGTTTGTGCTGCCGGAGGGAAAATTACAAGGGAAGGTAGGACGG
AGAGGGGGTCGAGAAGGGTGTGGATAAGGGCACAGAACAGCAAACGTACA
GTCTGTATCAAAGATAAAATACATCGATTAGGAAAAATGTCAGATAGTTG
A
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protein sequence of rna2299

>rna2299-protein ID=rna2299-protein|Name=rna2299|organism=Nannochloropsis gaditana|type=polypeptide|length=203bp
ARQPREGSRSAGNFRSGPYGRVRFEWDAQASEREQPLPHVLPPVLAGRGG
ERGRGATTAGAPQPPERQGRAAAGGLAYPRRGGGVGSIQGSREGGREGGR
VEEGAEPVAPALLLVPSTSSSPPVSLVEEEGQGEGVRSPGVLMELSTPAD
VKGYEMVGTLFKRRGGIGRLLGWKPRLFTLYRGKLCYYEAEYLEEVDNRR
KPR
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mRNA from alignment at CM002459.1:65754..66375-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2299 ID=rna2299|Name=rna2299|organism=Nannochloropsis gaditana|type=mRNA|length=622bp|location=Sequence derived from alignment at CM002459.1:65754..66375- (Nannochloropsis gaditana)
GCGCGGCAACCGAGGGAAGGGTCTAGGTCGGCAGGGAACTTCCGTAGTGG
CCCCTACGGACGCGTCCGGTTTGAGTGGGATGCACAAGCATCTGAGCGAG
AGCAGCCTCTCCCTCACGTCCTCCCTCCCGTCCTCGCTGGCCGGGGAGGG
GAAAGGGGGAGGGGCGCGACGACGGCGGGGGCGCCGCAACCACCTGAAAG
ACAAGGGAGGGCCGCAGCAGGCGGTCTCGCATACCCACGGAGGGGGGGGG
GCGTGGGCTCGATTCAGGGAAGCAGAGAGGGAGGGCGGGAAGGAGGGAGG
GTGGAGGAAGGAGCCGAGCCGGTGGCTCCGGCGCTCCTCTTGGTGCCATC
CACCAGCTCCTCCCCGCCCGTGTCGCTGGTCGAAGAGGAGGGACAAGGGG
AGGGTGTGCGCAGCCCGGGAGTGTTGATGGAGCTCTCCACGCCGGCGGAT
GTGAAAGGGTACGAGATGGTGGGCACCCTGTTCAAACGCCGCGGGGGCAT
CGGGCGTCTGCTCGGGTGGAAACCACGCTTGTTTACGCTGTATCGGGGAA
AGCTCTGCTACTACGAGGCGGAGTATTTGGAGGAAGTTGACAACCGACGC
AAGCCCAGGTGATATGGAGCGA
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Coding sequence (CDS) from alignment at CM002459.1:65754..66375-

>rna2299 ID=rna2299|Name=rna2299|organism=Nannochloropsis gaditana|type=CDS|length=612bp|location=Sequence derived from alignment at CM002459.1:65754..66375- (Nannochloropsis gaditana)
GCGCGGCAACCGAGGGAAGGGTCTAGGTCGGCAGGGAACTTCCGTAGTGG
CCCCTACGGACGCGTCCGGTTTGAGTGGGATGCACAAGCATCTGAGCGAG
AGCAGCCTCTCCCTCACGTCCTCCCTCCCGTCCTCGCTGGCCGGGGAGGG
GAAAGGGGGAGGGGCGCGACGACGGCGGGGGCGCCGCAACCACCTGAAAG
ACAAGGGAGGGCCGCAGCAGGCGGTCTCGCATACCCACGGAGGGGGGGGG
GCGTGGGCTCGATTCAGGGAAGCAGAGAGGGAGGGCGGGAAGGAGGGAGG
GTGGAGGAAGGAGCCGAGCCGGTGGCTCCGGCGCTCCTCTTGGTGCCATC
CACCAGCTCCTCCCCGCCCGTGTCGCTGGTCGAAGAGGAGGGACAAGGGG
AGGGTGTGCGCAGCCCGGGAGTGTTGATGGAGCTCTCCACGCCGGCGGAT
GTGAAAGGGTACGAGATGGTGGGCACCCTGTTCAAACGCCGCGGGGGCAT
CGGGCGTCTGCTCGGGTGGAAACCACGCTTGTTTACGCTGTATCGGGGAA
AGCTCTGCTACTACGAGGCGGAGTATTTGGAGGAAGTTGACAACCGACGC
AAGCCCAGGTGA
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Synonyms
Publications