EWM28382.1, cds2291 (CDS) Nannochloropsis gaditana

Overview
NameEWM28382.1
Unique Namecds2291
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:65764..66375 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28382.1
ProductPleckstrin like protein
Partialtrue
Orig transcript idgnl|cribi|Naga_102939g1.4294.mrna
GbkeyCDS
End range.
End range66375
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:65764..66375 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR001849PH_domain
IPR011993PH-like_dom
Homology
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BLAST of EWM28382.1 vs. NCBI_GenBank
Match: gi|585110758|gb|EWM28382.1| (Pleckstrin like protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 390.578 bits (1002), Expect = 4.515e-137
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0 
Query:    1 ARQPREGSRSAGNFRSGPYGRVRFEWDAQASEREQPLPHVLPPVLAGRGGERGRGATTAGAPQPPERQGRAAAGGLAYPRRGGGVGSIQGSREGGREGGRVEEGAEPVAPALLLVPSTSSSPPVSLVEEEGQGEGVRSPGVLMELSTPADVKGYEMVGTLFKRRGGIGRLLGWKPRLFTLYRGKLCYYEAEYLEEVDNRRKPR 203
            ARQPREGSRSAGNFRSGPYGRVRFEWDAQASEREQPLPHVLPPVLAGRGGERGRGATTAGAPQPPERQGRAAAGGLAYPRRGGGVGSIQGSREGGREGGRVEEGAEPVAPALLLVPSTSSSPPVSLVEEEGQGEGVRSPGVLMELSTPADVKGYEMVGTLFKRRGGIGRLLGWKPRLFTLYRGKLCYYEAEYLEEVDNRRKPR
Sbjct:    1 ARQPREGSRSAGNFRSGPYGRVRFEWDAQASEREQPLPHVLPPVLAGRGGERGRGATTAGAPQPPERQGRAAAGGLAYPRRGGGVGSIQGSREGGREGGRVEEGAEPVAPALLLVPSTSSSPPVSLVEEEGQGEGVRSPGVLMELSTPADVKGYEMVGTLFKRRGGIGRLLGWKPRLFTLYRGKLCYYEAEYLEEVDNRRKPR 203
The following BLAST results are available for this feature:
BLAST of EWM28382.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585110758|gb|EWM28382.1|4.515e-137100.00Pleckstrin like protein, partial [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2299rna2299Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications