rna2298, rna2298 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2298
Unique Name	rna2298
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2109
Alignment location	CM002459.1:64411..65235 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100264g1.10407.mrna
Orig protein id	gnl\|cribi\|Naga_100264g1.10407
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:64411..65235 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100264g1	gene2194	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2298	rna2298-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28388.1	cds2290	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:64411..65235-
coding sequence from alignment at CM002459.1:64411..65235-

mRNA sequence

>rna2298 ID=rna2298|Name=rna2298|organism=Nannochloropsis gaditana|type=mRNA|length=2109bp
GGTGGCTGCTGACCTCAACTCATCATTCGTTTACAATTTCGTCCCATTTT
CGCAGGCGCCTATGCCATCTCCGCATGCGTCGCATAAGAATGCTCCGTCC
GTCACTATTTATAACCTACCTGATTACCTGCCTCCAGTCGACGAAGAACT
CCACTCTCGTATGATGAAGCATTACGGTGAAGAGCATTGGAATCGTATGC
GTCGGGCACTTTCTACCAGTCCATCTCATTCCTGTCTTCGTGTGAACACT
ATGAAAGCGGATACACAATCTGTGTTGGAGGAGGTAACCACTTATGTGAA
CAATCATCGCAAGCAAAGCACCTGCACTGAGGAAAAGACAGCCCGAGACG
GAGAACAAGCCTCCTATCCCCCATCCAAGCCGTACTTGCACCCGATTCCG
CCACTCTCCTCTGACACCATCATCATCCCGCACGCGTCGTCCTTCAAACC
TCCGCCTCTCTTCAATCATTTCTCACCCGTACCCAACAAATTGAATCCTT
TCATCGTGGTCGTCGACCGCCTGTGCGGGGAAGCTGTGCTGCGTGGCGCC
GACGTCTTCGTGCGGGGCGTATGGAGCGCGAGTGCTGGCATCGCCTCGGG
CTCCCGCGTGCTCCTTCTTATGGACCTTCACCGACACTCCCAGCGAGGCT
GCCTGTACGCCGACTACCAAGGCGAGGCCATCTGCATCGGGCAAGGGGTC
GCCCTCGTCCCCCGTGCGGAGCTCGTCACCGCCACCCACGGCCTGGGTAT
CCGGGTCACCCACCGCATGGGCCCTCAAGCCCCGCCCCTCAACGGTTTCC
TCCCTGGCCGTCTCTTTCCTCAAAACCTCCCTTCCCTCCTCGTCGGGCAC
GTCCTCGCGCCCTTGCCAGGCAGCACCGTCATCGACTTGTGCGCGTGCCC
GGGCGGGAAAGCCACGCACCTTGCCACGCTCATGCGGGGGGAGGGCGTGG
TGGTGGCGTGCGACCGGAGCCGGAAAAAAATCAAGGCGCTGCAGGCGTTG
GGGGAAAGAATGGGGCTGCTCCCTTGCTTGTGCCCCCTCGTCTTGGACAC
GACCCACCCCGTCCTTCCCCCCTCCCTCCGGGACCGGCGGCACCTGCCTT
CGTCTCACCCTGTGGCTGTGTTGGCCGCGGCGGCGGAAAACACCGACGGC
CTCCCCCTCGTTCCCGGTTTTTATCCCGAGACCTTCGACCACGTCCTCCT
CGATCCCCCCTGCTCTGCCTTGGGCCTCCGACCGCGGTTCTCCCTCCCCG
TGCGGGGCCAAGACTTGGACGCGTTCGTGGCGTTCCAACGGAAGTTTTGG
TGGGCGGCGGTGTTTTTGTTGCGAGTGGGGGGGAGCATGACCTATTCCAC
CTGTACCCTCAATCCTCAGGAAAACGAGGACATGGTTCGGTACGCCCTCG
ACACGTACTCGATCTTGCAACTGGTGCCGGCTGAGCCACGCCTGGGGGCT
CCGGGAGGGGGAAAGGCTCTGTCGGACGAAGAGAGGGGCAAGGTACAGCT
TTTCTTGCCGGGGGGGGGAGGGAGGGAGGGCGGATGGGAGGAAGGGGAAG
AGGGAGACTTGGACGTGAGTGGTTTCTTTGTCGCAAAATTTGTCAAAGTG
GCGAGTGTTTTTGAGGGAAAGGATGGGGAAGCTAAGGGGACAGCCTGGCA
AGACGAGCGGAATGACCGGGACAGTGGGTGGAAGAGAAGGGGTCCCCAAG
GGGAGGAGGAGGAAGGATAAGCCGGAGGGTGGCCCAGCACCGGCCTCAAA
GCATGTAAACGTAGGTGAATTTTGCAATAAGAAAGTATGGACCAGGAGAA
AGAGAGACAAAGGACAGAGCTATCACTTCTTCCTCCTTCTTCTCCCTGCC
CTCTCCGTGATAAGCCTCCTGCGGCTACGGCAGCCCCTGCACGCTCATCT
GCTCAGCAGATTGATCCATCCTCCCCCTCAGAGCCAGCGGTGCAATTTTC
CAGCGTTCACAGTGTCGGGATTCCGCTGGACCCTGACTCCGACGATGCGA
AGACTCTGTCTGGGAGCCTTCCCTAATCCTCCCCCGAACATGACGATAAC
AGACAGAAAAAAATACCTGGAAACGCACAGGCACAAAGAATCGCCAAGGT
ATCTAACGG

protein sequence of rna2298

>rna2298-protein ID=rna2298-protein|Name=rna2298|organism=Nannochloropsis gaditana|type=polypeptide|length=66bp
MGVGKFSKIDVQKSVKPRVVCAAGGKITREGRTERGSRRVWIRAQNSKRT
VCIKDKIHRLGKMSDS

mRNA from alignment at CM002459.1:64411..65235-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2298 ID=rna2298|Name=rna2298|organism=Nannochloropsis gaditana|type=mRNA|length=825bp|location=Sequence derived from alignment at CM002459.1:64411..65235- (Nannochloropsis gaditana)
ATGGGCGTCGGGAAATTCTCGAAGATCGACGTGCAAAAGAGCGTGGTCCT
TGAATACTAGGGGCCTTGGATCCCCCTCCTCCCCCCCGCCCTCCCTCCCG
CCCTCCCTCCCGCCCTCCCGTGTCTTGTTCTCTGCTTGTTCGGTGCTCCG
CCTGTGGGGTGGGAGAGCGAAGAAGACGGGAGAGAAAGAGGGCTGTGGTA
GGGGAGGAACAAAGGGAGGGAAGGCGTGGGGGGAGAGCCAAGGGTTCGGG
GGAAGGAGGGAGGGGAGGAGAGGAGGGAGAGGAGGAGAGAAGGGAGGGAA
ATCACAGGGACCGAACTCGGCATATTTACGGAGATATCGTTGAAGCGGGA
AAGGGATAAGAGAGGAGGGAGGATAGGCAGTGGAATGGATTCTTTCGCGA
ACGAATGTATGGTCCAGTCGTTGTCTGAGAATGGTGAATTCGACGCTCGG
ACGAAGGGGGGGGAAAGAGAGAACGAGGCGGGAAGTGGGTCGGGAAGGAG
GGAAGCTTGGATGGGATGGACGGGAGGAAAGCATGGATAGGGTTAGAGTA
GCCGCACTAATTTGTATATCAATAATAACAGCCTGGAGATGGGGAGGGGT
GGGATGGAAGTGGAGTGACAAAGGCGGTGAATGTCGCGGTGAGATATCTG
TGAGAAAAATCTGGTGAAGAAACCGCGTGTGGTTTGTGCTGCCGGAGGGA
AAATTACAAGGGAAGGTAGGACGGAGAGGGGGTCGAGAAGGGTGTGGATA
AGGGCACAGAACAGCAAACGTACAGTCTGTATCAAAGATAAAATACATCG
ATTAGGAAAAATGTCAGATAGTTGA

Coding sequence (CDS) from alignment at CM002459.1:64411..65235-

>rna2298 ID=rna2298|Name=rna2298|organism=Nannochloropsis gaditana|type=CDS|length=402bp|location=Sequence derived from alignment at CM002459.1:64411..65235- (Nannochloropsis gaditana)
AAACCGCGTGTGGTTTGTGCTGCCGGAGGGAAAATTACAAGGGAAGGTAG
GACGGAGAGGGGGTCGAGAAGGGTGTGGATAAGGGCACAGAACAGCAAAC
GTACAGTCTGTATCAAAGATAAAATACATCGATTAGGAAAAATGTCAGAT
AGTTGAATGGGCGTCGGGAAATTCTCGAAGATCGACGTGCAAAAGAGCGT
GAAACCGCGTGTGGTTTGTGCTGCCGGAGGGAAAATTACAAGGGAAGGTA
GGACGGAGAGGGGGTCGAGAAGGGTGTGGATAAGGGCACAGAACAGCAAA
CGTACAGTCTGTATCAAAGATAAAATACATCGATTAGGAAAAATGTCAGA
TAGTTGAATGGGCGTCGGGAAATTCTCGAAGATCGACGTGCAAAAGAGCG
TG

Synonyms

Publications