rna2292, rna2292 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2292
Unique Name	rna2292
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	606
Alignment location	CM002459.1:47314..48694 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100264g7.10408.mrna
Orig protein id	gnl\|cribi\|Naga_100264g7.10408
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:47314..48694 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100264g7	gene2190	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2292	rna2292-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28389.1	cds2284	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:47314..48694-
coding sequence from alignment at CM002459.1:47314..48694-

mRNA sequence

>rna2292 ID=rna2292|Name=rna2292|organism=Nannochloropsis gaditana|type=mRNA|length=606bp
ATGAATCTTTCAGAGGAAATGGAAGGGTGCTCAGAGACAAGAATAGAGTT
GGGTGAATACAAGGATGGGTTTGAAAATAGACAAGATCATAGAGTATGGG
AGGAGAGGGCGCTGGAACTACCATCAACACCCTCAACTCGGGAAGAAGAC
GTGGGGGGAGGGAAGCATGCGGCAGCGGAGGTCGAGATGGAGGATGCGAA
AGGAGGACGAGAGCGTGAGGATGCAGTATCTGCGAGGTCAATAAGGAGTC
AAAGATGGCAAAGACATGCCGTTACGACGCTTGAATGGACGATTGAGGCT
CTGAAGACTTCCTCCTCCTCCTCCTCCTACCTCTCCTCCTCCTTCGCCCC
CTCCGCATCCTCTGCGAGCATATGGCAGTACACCCGCCGGGCCATAAAGT
ATCCGTTTCAGTGTCTGGCTGCCAAGGAGAATGAGAGATTTGGCCTCAAG
ACGGAGGCGAAGGGAATCGACCTCGAGGGGGGGGGTATACGGAAGGATAG
GTCGAAGCGGCGGCTAGGAACGCGGACGACGTTGCTGCAAGGTATTGCGG
GAAAGACACAGTCGGGAGAGTTCACGGCCGTCATGGGTCCTAGTGGTAAG
AACTGA

protein sequence of rna2292

>rna2292-protein ID=rna2292-protein|Name=rna2292|organism=Nannochloropsis gaditana|type=polypeptide|length=95bp
MGGRDNGNPIPTHGIFNYTAVGGTVPFTANDLGPAAPQWRARSDLSGYRY
SPIACHVCSYLCFTAPVVGDEEDRCQFTLDWNTTAKMQDRCPHWM

mRNA from alignment at CM002459.1:47314..48694-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2292 ID=rna2292|Name=rna2292|organism=Nannochloropsis gaditana|type=mRNA|length=1381bp|location=Sequence derived from alignment at CM002459.1:47314..48694- (Nannochloropsis gaditana)
GAGGGCGAGGCTTACTATGTTGGAGATTGGATCAGCCAGGTAAGAGGGAC
GACAGGGAAACGATGGAGGTAGTCAGGGTCAAGATATAAAGAGAAATTCG
TGGCATTAGGGAATGTCGCTATCGTCCTGGCGGGTGGGAGACAGTTCTTC
GAAATCCATCGCTTCCATTTTCCCTTCTTTCCTCCCCTGCGCGCTCAGTT
TCCTTCCTATCCTTTCAATACCTTTTCCCTTTATTTGAACGCTCTTTACT
AGGTTCCGTGCGGCATAATCAATGCCTGTGACGACTTTAAAGCCAGTTCA
GATCAGATGGGGGGACGCGACAATGGAAATCCTATACCTACACACGGCAT
TTTTAATTATACCGCAGGTAGGAAGCGAGGTTCTTGATGATACCCGTGAG
GGAAAGGAGAAACATCCAACAGGGAAAACGCCGCATTTGGGGGGGCATTG
GGTGCTTTTCAAGCATGCATACCGACGCTTCATTTATCTTCCGACGGCAG
TGGGCGGGACGGTTCCTTTTACGGCGAACGACTTGGGCCCCGCGGCGCCT
CAGTGGCGGGCTCGGAGCGACCTCTCCGGCTATCGGTATGTTGTTGGCTC
ACGTCGAAAGGGATGGCAAAGGGAAAACAAGAAAGAAAATGAGGCGTAGT
ATCTTGCCAGAAAAACGTCCTTGTCCTGAGGGATTTGTTTTCCTTCCGCA
ATACAGGTACAGCCCTATTGCCTGCCATGTGTGCAGCTACTTGTGCTTCA
CAGCCCCTGTAGTTGGCGATGAGGAGGACAGATGCCAGTTCACTTTAGAC
TGGAACACGACTGCCAAGATGCAAGATCGATGTCCTCATTGGATGTAGTG
GGTGTAAGAAACGAGTTGTTTGTGAGGTCTGAGGGGGATGGGGGATACCT
TGCTGGGCGAGAAAGGAAGAATAAGTTGTTTGAGGGGGCCGGAAACAGGT
TAGTGAGGGTTATTGATGGGAAGGACAGCGCTTAGCAGGCAAATAATTAA
GTTGTTTTTTCATGTTTGATTACTCGGAAGGAAAGCGTTAGAGGATTGAC
GTAAATGCGAGGAGTCGTAGGCGTCGGGAGATGATACTTTGACTCTACAG
ATATTAACACACAAGCAATCAAGCAATAAATAAAGGCAGGAGAAAGATAC
CAATTTTGGAGTACACAAGGATGGGTGATGATAATTTTGCCTTCTCTGTG
GGATTGGAAAAACGAGGTAGAATGGATGGGCCGCTCGAAGATATATAGCC
GGTTTAGACGGGGTTATAGGCTTTTCCTGTCCTGTGACAGGACTTGATGC
AACAAGAAAAGGATCATTGATTCGTGGTGATAACGACCACTGACGTAATA
GCGTGCTTAAAGTAGCAATCAGCCTTCCTGA

Coding sequence (CDS) from alignment at CM002459.1:47314..48694-

>rna2292 ID=rna2292|Name=rna2292|organism=Nannochloropsis gaditana|type=CDS|length=864bp|location=Sequence derived from alignment at CM002459.1:47314..48694- (Nannochloropsis gaditana)
GTACAGCCCTATTGCCTGCCATGTGTGCAGCTACTTGTGCTTCACAGCCC
CTGTAGTTGGCGATGAGGAGGACAGATGCCAGTTCACTTTAGACTGGAAC
ACGACTGCCAAGATGCAAGATCGATGTCCTCATTGGATGTAGTGGGCGGG
ACGGTTCCTTTTACGGCGAACGACTTGGGCCCCGCGGCGCCTCAGTGGCG
GGCTCGGAGCGACCTCTCCGGCTATCGATGGGGGGACGCGACAATGGAAA
TCCTATACCTACACACGGCATTTTTAATTATACCGCAGGTACAGCCCTAT
TGCCTGCCATGTGTGCAGCTACTTGTGCTTCACAGCCCCTGTAGTTGGCG
ATGAGGAGGACAGATGCCAGTTCACTTTAGACTGGAACACGACTGCCAAG
ATGCAAGATCGATGTCCTCATTGGATGTAGTGGGCGGGACGGTTCCTTTT
ACGGCGAACGACTTGGGCCCCGCGGCGCCTCAGTGGCGGGCTCGGAGCGA
CCTCTCCGGCTATCGATGGGGGGACGCGACAATGGAAATCCTATACCTAC
ACACGGCATTTTTAATTATACCGCAGGTACAGCCCTATTGCCTGCCATGT
GTGCAGCTACTTGTGCTTCACAGCCCCTGTAGTTGGCGATGAGGAGGACA
GATGCCAGTTCACTTTAGACTGGAACACGACTGCCAAGATGCAAGATCGA
TGTCCTCATTGGATGTAGTGGGCGGGACGGTTCCTTTTACGGCGAACGAC
TTGGGCCCCGCGGCGCCTCAGTGGCGGGCTCGGAGCGACCTCTCCGGCTA
TCGATGGGGGGACGCGACAATGGAAATCCTATACCTACACACGGCATTTT
TAATTATACCGCAG

Synonyms

Publications