EWM28389.1, cds2284 (CDS) Nannochloropsis gaditana

Overview
NameEWM28389.1
Unique Namecds2284
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:48328..48388 -
Alignment locationCM002459.1:48110..48194 -
Alignment locationCM002459.1:47847..47988 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28389.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100264g7.10408.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:48328..48388 -
CM002459.1supercontigCM002459.1:48110..48194 -
CM002459.1supercontigCM002459.1:47847..47988 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28389.1 vs. NCBI_GenBank
Match: gi|585110767|gb|EWM28389.1| (hypothetical protein Naga_100264g7 [Nannochloropsis gaditana])

HSP 1 Score: 203.371 bits (516), Expect = 2.083e-66
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
Query:    1 MGGRDNGNPIPTHGIFNYTAVGGTVPFTANDLGPAAPQWRARSDLSGYRYSPIACHVCSYLCFTAPVVGDEEDRCQFTLDWNTTAKMQDRCPHWM 95
            MGGRDNGNPIPTHGIFNYTAVGGTVPFTANDLGPAAPQWRARSDLSGYRYSPIACHVCSYLCFTAPVVGDEEDRCQFTLDWNTTAKMQDRCPHWM
Sbjct:    1 MGGRDNGNPIPTHGIFNYTAVGGTVPFTANDLGPAAPQWRARSDLSGYRYSPIACHVCSYLCFTAPVVGDEEDRCQFTLDWNTTAKMQDRCPHWM 95          
BLAST of EWM28389.1 vs. NCBI_GenBank
Match: gi|553180964|ref|XP_005853490.1| (hypothetical protein NGA_0469400 [Nannochloropsis gaditana CCMP526] >gi|422295572|gb|EKU22871.1| hypothetical protein NGA_0469400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 167.933 bits (424), Expect = 6.995e-52
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0
Query:   15 IFNYTAVGGTVPFTANDLGPAAPQWRARSDLSGYRYSPIACHVCSYLCFTAPVVGDEEDRCQFTLDWNTTAKMQDRCPHWM 95
            I+  TAVGGTVPFTANDLGPAAPQWRARSDLSGYRYSPIACHVCSYLCFTAPVVGDEEDRCQFTLDWNTTAKMQDRCPHWM
Sbjct:   54 IYLPTAVGGTVPFTANDLGPAAPQWRARSDLSGYRYSPIACHVCSYLCFTAPVVGDEEDRCQFTLDWNTTAKMQDRCPHWM 134          
BLAST of EWM28389.1 vs. NCBI_GenBank
Match: gi|585109275|gb|EWM27098.1| (lipase family protein [Nannochloropsis gaditana])

HSP 1 Score: 88.5817 bits (218), Expect = 1.658e-18
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 0
Query:   16 FNYTAVGGTVPFTANDLGPAAPQ----WRARSDLSGYRYSPIACHVCSYLCFTAPVVGDEEDRCQFTLDWNTTAKMQDRC 91
            ++YTA+GG+VPFT     PA  Q    W  RSD++G+RYSP+A H CSY+CFTAP VGD  D+C FTL+  ++  M  RC
Sbjct:  429 YSYTALGGSVPFT-----PAQMQNGRTWALRSDVAGFRYSPVAAHTCSYMCFTAPSVGDAYDQCVFTLELGSSVDMDKRC 503          
The following BLAST results are available for this feature:
BLAST of EWM28389.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585110767|gb|EWM28389.1|2.083e-66100.00hypothetical protein Naga_100264g7 [Nannochloropsi... [more]
gi|553180964|ref|XP_005853490.1|6.995e-5296.30hypothetical protein NGA_0469400 [Nannochloropsis ... [more]
gi|585109275|gb|EWM27098.1|1.658e-1852.50lipase family protein [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2292rna2292Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications