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Properties
| Property Name | Value |
|---|
| Product | trafficking protein particle complex 1 |
| Orig transcript id | gnl|cribi|Naga_100206g3.1431.mrna |
| Orig protein id | gnl|cribi|Naga_100206g3.1431 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:11611..13755 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2283 ID=rna2283|Name=rna2283|organism=Nannochloropsis gaditana|type=mRNA|length=2058bp
TACGCACAAGCTGACATGAAAGCCATTGAATGCTTGCAGAATTTTGTTCT
CTGATTGTCTCTTCTTGTGGTCAGCCGGCTTGAACGTCGTCCGATTAGTG
CCTTACTAGTATGAGCCTTAGCCCACCCGTCTCTCATACATTTTATTGAC
CCACCCACAGAATATATAGACATGCCACCCCTACATAGGATTAATGCCGC
TTGTGTTGCAGTAATGGCAGCCATGGTGTCTCGAATTACCTCTTCCTACG
CATTAGCCACAGACATTCAGGATCCTCTGTTGCCTTCCAATTTCACACAA
ACAAGTTGCTCTCGCTCGTCTAAAGCGGCCAATATTATGGACTGTACATA
TGAAGGCCATCTTATACACGTAACAACTGTCGACGCACATACAAACGTGG
AAGCACTGGGCTCTAAAATATGGAGTGACTTGTCGACAGGAGAGATGGAA
GTGGAGGCACCTGGATTCAAGTTGAGATGTTTGATAAGTAGAGGAGAAAA
GGATTTTGATGACCAACCTTGTGAGGTTGACACGTCCTGGAGAAGGAAGC
CTGACGCAGATTATTCCGTGGAAGCATCAGAAGTGCCCGCCTCCATGGCA
TCTCCATCCTCACCGGAGCATCCTTCTTTCGCGGTCTCGCTTCTTCGCGG
GGCGCGTACCCTGGAAGCTAGCACCGACCTGGCCGGGCCCCAGCCGGCGA
CTCAGCCGTTTGACTGCCGAAGGACAGCAGCCGGTCGTAACTGCACGGAC
GCAGGGGGACAGTGGGCACATGTGGAGAGGAACGAAGACGGCGGCACGCA
CGTGACGGCGCCCGGCGTGGACATCAGGACGGGGGGGGAAGGCGGGGGAG
ACGTGCGGGTGGACGCCTGGGGGTTCCATCTCGTATGCCGAAAGGAGAGT
GCGACGAACAAGACCACCTGTGGGGCCAGCAACGACTGGTTTGGAAAGGG
TGGGGCGGGACGCACGGGCGATGGGCCGGCTCCGGTCTCGGCAGCCAGGC
CCAGGGGGCCGGAGGAGGACGTGCCCGACCCTGTCATGCACTTAGCGCCC
CAGCACCGGGCAGACAGACCCGCGGAAGGCAGCGGCAGCCAAGGTAGAGG
CAGTGAGGGTGGGAGCAGGGGGATGGCTTCAGGCAGCTCCACGACCATCA
CGGACGGGCCTTTCGACAGGTTTCAACCGGCGTCTCCTGCTGGCACGGTG
GGGGAAAGGCTGACTACCACACTTGGACAAAAAGCCTCTGAACCGGGCAC
TGTTGCATCAAATATTCTGTCTAAGGAGATAGAAAGCGCCTCTGCTCCGG
CCACGATTCTTGTCGGGGTGGTAGAGGACCCCCCCCCCCACCGTCCGTCG
CTTGCACCAAAGTCTCCCTTACATGGCTCGACCGCTCCTTCCACCCCCGA
CCCCCGCGATCCCCTCTGGGTGTCAAACCCGAAGAACTGTACGCGGGCTT
TCAAGGGGGAAGGGGAAGACTGCTGGGATGACGAGCACTGGGTAAACGGA
CGCACGGGCACGAGTGGAAGGAGGGAGGGACCCGGAGGAGAGAGTGGAGT
GGAGGTAACTAGTGCAGGCAGGGCCGATTTGCCCGTATCCGCGGGCGTTG
AAAAGGAAGATAGCGATGCGACAGATGCTGGGCGAAGATAAGACATGGCG
CAGTAAAGGAAATGATTGTGGCCGGCCCCATGCAATACGTCGTGGGAGAG
ACGCTCTACCTTGAGAGAGGACCGCGGAGACAGACGTGAGAGAGGAGGTT
TCATGAGGCGACAGGGTGCTGGTGGTCGGTTGACTTTTTAATTGGACGTA
AGTTACCTCCTTTAAAATGTTTAGAGGGAGATCGCCTCTGTAGAAAGCAA
TATTCAGGCAGAAATGATTATTTTGGCATGGGAAAAGGTCACACGGGCCT
TGTCATCTTGAGTCGTTGACACAATAGCAAATTTTGTTAATAGATGCATG
TTTGAAAGTGGGAAAGTGGTGGCTTTTCTCACCGCGAGGTGAGAAAAGCA
TACATGGAACGACACTCAAATCATGCAAAGGAAGAATCACTTATCAATGA
GGGAAATG back to topprotein sequence of rna2283 >rna2283-protein ID=rna2283-protein|Name=rna2283|organism=Nannochloropsis gaditana|type=polypeptide|length=268bp
MRSCESSSVASHSKRHLKNMRSLAQAVVRDTVERLRQPPGRSNFTSTEAK
VVDCLPLIRTAGEELLGLVFFLVVMIYNLYIFDRRGACLFYREWCRPLNT
LAEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHH
FETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAEPSVQDRRRRECRPFTP
SIRAKFGAVCDKFAGIQIVQEKRRNDLCTAGGYVIVFNTISTQGTLEQSF
GLAVRVIDANGEMKMTSK back to topmRNA from alignment at CM002459.1:11611..13755- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2283 ID=rna2283|Name=rna2283|organism=Nannochloropsis gaditana|type=mRNA|length=2145bp|location=Sequence derived from alignment at CM002459.1:11611..13755- (Nannochloropsis gaditana)
ATGAGATCTTGCGAGTCGAGTTCCGTTGCTTCACATTCGAAGCGGCATTT
AAAGAATATGAGATCGCTCGCGCAAGCTGTCGTCTATTTACGACAATAAC
ATCTTGAACTCTTCATATTCGATTTCGCCGGATCTTAGGTTTCAGTGTGA
GAAGAAAGCGAAATGAGTTGCATAGTTGAACATATGCCCAGATCTGTATT
CATTTCGCCTACTTCCTCTTTCATCCATTTCTATGCTTACCCATTCGAGT
CGACTTTGTTAATCAACTCCTCAATATCAATCATCAGTCCGAAGTCTTTT
TTTATTATATGTACCAAATTTTCCCGCTTGACATGTCCTTTCTTGTCGGC
GCGGCCTCCACATGCGACAAACGCGTCTACCATGTCCCCGTCGTCATCAA
ATGCCAATGCTCGTACTTTCTGCAATTCAATAATTCGTAAAATTTGGCCA
AAATCAATTGATCCATTCATTCCCTCGTCTACGTCGGCAATCATCTGGAA
CAATTCCTCTTCCGTCGGTTTTTGCCCCAAATGCTCCAGCACTCCTCGCA
GTGAGGCCACGTCCAATGTTCCAGTTTTGGCCGTGTCAAAAATTATGAAA
GCTGCACGGCAAGCATCAATTTCCTCTTGACTCAGAACCATTGCTATACT
AACGAATGAGTGTCATATCTTCCTCGTGAGATAGTTTTTTGGGTCGAAAA
GTTTTAAAAAAATGTCGTAGGGTGGGGAGGTAGGGCGAGTTTGTAGCAGT
AACGGTAGAAGCGAGAGACGTAGAGTCTCGTCCAACATGTCCCTGCTCTC
CTTTCTTACAGCCTCCGGAACCCGGCCTTATCTTCCAACAGGTTCGAGAC
ACTGTAGAGAGACTCCGTCAGCCTCCAGGGAGGAGCAACTTCACCTCCAC
GGAGGCAAAGGTCGTCGATTGTCTTCCACTCATTCGGACCGCAGGAGAGG
AGTTGCTGGGCCTGGTATTCTTCCTAGTGGTAATGATTTACAATCTCTAC
ATATTCGACCGTCGGGTGAGTGAATTAGAACTATCATGCTATTTCTTCCG
GATCCATATGATCTCATCCTCCTTGCGTGTGCCTCGCTCCTTAGGGCGCG
TGCCTCTTTTACAGGGAATGGTGCCGGCCTCTCAACACCCTGGCCGAGGA
TCCTGAGGAGGAGAAAAAGCTCATGTTCGGCATGCTATACTCCATCAAAG
GACTAGTTGCGGCGTTAGGAAGCAAGGTGAGCCATAATCTTCTTACTTAC
AAATTAGCTGCTCAAATTTTCATCTCTGTTGCAGAGATAGAAAATAAATC
ACGTCAAGAGATGCGCACTAAGCATCTTCTTTGACATGAATCCCGACAGA
ATGCTCCGTCATCCTCAGACGGTTTGAACCATTTACGAACAAATGCGTAC
ACGTTGCACCATTTCGAGACCTTAACGGGCCTCCGCTTCGTGCTCAACAC
GGACAACTCGATTGTAGATATGCGAGGGCACTTGAGGCACATTTATTCAG
GTCAGTGGAGATACGCAAGAAGACCCAAGCGGCTCTTGATACGAATCGTG
TATGGGCAAGTTGACTGTCCTAATCACAATATCCTCATTCTGGGCAATCT
TTTCCCAAAATTCACACTTTGTCAAAGGGATTTGGGTTCAGCATGTTGTG
CAGAACCCTCAGTACAAGATAGGAGAAGGAGGGAGTGCCGGCCGTTTACC
CCCAGCATTCGCGCAAAGTTTGGAGCAGTATGTGACAAATTTGCCGGGAT
TCAAATAGTACAGGAGAAGCGCAGAAATGACTTGTGTACAGGTGGGTGCT
GACACGTCCCACAACAAAGTAACAATACGGAAAATGCAGAGGTTGGCAGC
ATTGCTTCATTTGGAACCCGTAATTATACACTATGATTTTTCGCGAGGGC
AGCTTCCCTAACCTTCTTTTCGGGCATCATTACCCTTAGCCACTTACTGC
ACTACGCTTCTTTGCTTTGCAATCCTTCCTCTCACTTCACTCCTTTATCT
CATATTCTTGTTTTTCTACGTTTAAGCTGGAGGGTACGTAATTGTGTTTA
ATACAATCTCTACGCAGGGCACGTTGGAACAAAGCTTTGGCCTCGCTGTA
AGAGTAATTGATGCTAACGGAGAGATGAAAATGACATCAAAATAA back to topCoding sequence (CDS) from alignment at CM002459.1:11611..13755- >rna2283 ID=rna2283|Name=rna2283|organism=Nannochloropsis gaditana|type=CDS|length=4842bp|location=Sequence derived from alignment at CM002459.1:11611..13755- (Nannochloropsis gaditana)
CTGGAGGGTACGTAATTGTGTTTAATACAATCTCTACGCAGGGCACGTTG
GAACAAAGCTTTGGCCTCGCTGTAAGAGTAATTGATGCTAACGGAGAGAT
GAAAATGACATCAAAATAACATGTTGTGCAGAACCCTCAGTACAAGATAG
GAGAAGGAGGGAGTGCCGGCCGTTTACCCCCAGCATTCGCGCAAAGTTTG
GAGCAGTATGTGACAAATTTGCCGGGATTCAAATAGTACAGGAGAAGCGC
AGAAATGACTTGTGTACAGAATGCTCCGTCATCCTCAGACGGTTTGAACC
ATTTACGAACAAATGCGTACACGTTGCACCATTTCGAGACCTTAACGGGC
CTCCGCTTCGTGCTCAACACGGACAACTCGATTGTAGATATGCGAGGGCA
CTTGAGGCACATTTATTCAGGGCGCGTGCCTCTTTTACAGGGAATGGTGC
CGGCCTCTCAACACCCTGGCCGAGGATCCTGAGGAGGAGAAAAAGCTCAT
GTTCGGCATGCTATACTCCATCAAAGGACTAGTTGCGGCGTTAGGAAGCA
AGGTTCGAGACACTGTAGAGAGACTCCGTCAGCCTCCAGGGAGGAGCAAC
TTCACCTCCACGGAGGCAAAGGTCGTCGATTGTCTTCCACTCATTCGGAC
CGCAGGAGAGGAGTTGCTGGGCCTGGTATTCTTCCTAGTGGTAATGATTT
ACAATCTCTACATATTCGACCGTCGGATGAGATCTTGCGAGTCGAGTTCC
GTTGCTTCACATTCGAAGCGGCATTTAAAGAATATGAGATCGCTCGCGCA
AGCTGTCCTGGAGGGTACGTAATTGTGTTTAATACAATCTCTACGCAGGG
CACGTTGGAACAAAGCTTTGGCCTCGCTGTAAGAGTAATTGATGCTAACG
GAGAGATGAAAATGACATCAAAATAACATGTTGTGCAGAACCCTCAGTAC
AAGATAGGAGAAGGAGGGAGTGCCGGCCGTTTACCCCCAGCATTCGCGCA
AAGTTTGGAGCAGTATGTGACAAATTTGCCGGGATTCAAATAGTACAGGA
GAAGCGCAGAAATGACTTGTGTACAGAATGCTCCGTCATCCTCAGACGGT
TTGAACCATTTACGAACAAATGCGTACACGTTGCACCATTTCGAGACCTT
AACGGGCCTCCGCTTCGTGCTCAACACGGACAACTCGATTGTAGATATGC
GAGGGCACTTGAGGCACATTTATTCAGGGCGCGTGCCTCTTTTACAGGGA
ATGGTGCCGGCCTCTCAACACCCTGGCCGAGGATCCTGAGGAGGAGAAAA
AGCTCATGTTCGGCATGCTATACTCCATCAAAGGACTAGTTGCGGCGTTA
GGAAGCAAGGTTCGAGACACTGTAGAGAGACTCCGTCAGCCTCCAGGGAG
GAGCAACTTCACCTCCACGGAGGCAAAGGTCGTCGATTGTCTTCCACTCA
TTCGGACCGCAGGAGAGGAGTTGCTGGGCCTGGTATTCTTCCTAGTGGTA
ATGATTTACAATCTCTACATATTCGACCGTCGGATGAGATCTTGCGAGTC
GAGTTCCGTTGCTTCACATTCGAAGCGGCATTTAAAGAATATGAGATCGC
TCGCGCAAGCTGTCCTGGAGGGTACGTAATTGTGTTTAATACAATCTCTA
CGCAGGGCACGTTGGAACAAAGCTTTGGCCTCGCTGTAAGAGTAATTGAT
GCTAACGGAGAGATGAAAATGACATCAAAATAACATGTTGTGCAGAACCC
TCAGTACAAGATAGGAGAAGGAGGGAGTGCCGGCCGTTTACCCCCAGCAT
TCGCGCAAAGTTTGGAGCAGTATGTGACAAATTTGCCGGGATTCAAATAG
TACAGGAGAAGCGCAGAAATGACTTGTGTACAGAATGCTCCGTCATCCTC
AGACGGTTTGAACCATTTACGAACAAATGCGTACACGTTGCACCATTTCG
AGACCTTAACGGGCCTCCGCTTCGTGCTCAACACGGACAACTCGATTGTA
GATATGCGAGGGCACTTGAGGCACATTTATTCAGGGCGCGTGCCTCTTTT
ACAGGGAATGGTGCCGGCCTCTCAACACCCTGGCCGAGGATCCTGAGGAG
GAGAAAAAGCTCATGTTCGGCATGCTATACTCCATCAAAGGACTAGTTGC
GGCGTTAGGAAGCAAGGTTCGAGACACTGTAGAGAGACTCCGTCAGCCTC
CAGGGAGGAGCAACTTCACCTCCACGGAGGCAAAGGTCGTCGATTGTCTT
CCACTCATTCGGACCGCAGGAGAGGAGTTGCTGGGCCTGGTATTCTTCCT
AGTGGTAATGATTTACAATCTCTACATATTCGACCGTCGGATGAGATCTT
GCGAGTCGAGTTCCGTTGCTTCACATTCGAAGCGGCATTTAAAGAATATG
AGATCGCTCGCGCAAGCTGTCCTGGAGGGTACGTAATTGTGTTTAATACA
ATCTCTACGCAGGGCACGTTGGAACAAAGCTTTGGCCTCGCTGTAAGAGT
AATTGATGCTAACGGAGAGATGAAAATGACATCAAAATAACATGTTGTGC
AGAACCCTCAGTACAAGATAGGAGAAGGAGGGAGTGCCGGCCGTTTACCC
CCAGCATTCGCGCAAAGTTTGGAGCAGTATGTGACAAATTTGCCGGGATT
CAAATAGTACAGGAGAAGCGCAGAAATGACTTGTGTACAGAATGCTCCGT
CATCCTCAGACGGTTTGAACCATTTACGAACAAATGCGTACACGTTGCAC
CATTTCGAGACCTTAACGGGCCTCCGCTTCGTGCTCAACACGGACAACTC
GATTGTAGATATGCGAGGGCACTTGAGGCACATTTATTCAGGGCGCGTGC
CTCTTTTACAGGGAATGGTGCCGGCCTCTCAACACCCTGGCCGAGGATCC
TGAGGAGGAGAAAAAGCTCATGTTCGGCATGCTATACTCCATCAAAGGAC
TAGTTGCGGCGTTAGGAAGCAAGGTTCGAGACACTGTAGAGAGACTCCGT
CAGCCTCCAGGGAGGAGCAACTTCACCTCCACGGAGGCAAAGGTCGTCGA
TTGTCTTCCACTCATTCGGACCGCAGGAGAGGAGTTGCTGGGCCTGGTAT
TCTTCCTAGTGGTAATGATTTACAATCTCTACATATTCGACCGTCGGATG
AGATCTTGCGAGTCGAGTTCCGTTGCTTCACATTCGAAGCGGCATTTAAA
GAATATGAGATCGCTCGCGCAAGCTGTCCTGGAGGGTACGTAATTGTGTT
TAATACAATCTCTACGCAGGGCACGTTGGAACAAAGCTTTGGCCTCGCTG
TAAGAGTAATTGATGCTAACGGAGAGATGAAAATGACATCAAAATAACAT
GTTGTGCAGAACCCTCAGTACAAGATAGGAGAAGGAGGGAGTGCCGGCCG
TTTACCCCCAGCATTCGCGCAAAGTTTGGAGCAGTATGTGACAAATTTGC
CGGGATTCAAATAGTACAGGAGAAGCGCAGAAATGACTTGTGTACAGAAT
GCTCCGTCATCCTCAGACGGTTTGAACCATTTACGAACAAATGCGTACAC
GTTGCACCATTTCGAGACCTTAACGGGCCTCCGCTTCGTGCTCAACACGG
ACAACTCGATTGTAGATATGCGAGGGCACTTGAGGCACATTTATTCAGGG
CGCGTGCCTCTTTTACAGGGAATGGTGCCGGCCTCTCAACACCCTGGCCG
AGGATCCTGAGGAGGAGAAAAAGCTCATGTTCGGCATGCTATACTCCATC
AAAGGACTAGTTGCGGCGTTAGGAAGCAAGGTTCGAGACACTGTAGAGAG
ACTCCGTCAGCCTCCAGGGAGGAGCAACTTCACCTCCACGGAGGCAAAGG
TCGTCGATTGTCTTCCACTCATTCGGACCGCAGGAGAGGAGTTGCTGGGC
CTGGTATTCTTCCTAGTGGTAATGATTTACAATCTCTACATATTCGACCG
TCGGATGAGATCTTGCGAGTCGAGTTCCGTTGCTTCACATTCGAAGCGGC
ATTTAAAGAATATGAGATCGCTCGCGCAAGCTGTCCTGGAGGGTACGTAA
TTGTGTTTAATACAATCTCTACGCAGGGCACGTTGGAACAAAGCTTTGGC
CTCGCTGTAAGAGTAATTGATGCTAACGGAGAGATGAAAATGACATCAAA
ATAACATGTTGTGCAGAACCCTCAGTACAAGATAGGAGAAGGAGGGAGTG
CCGGCCGTTTACCCCCAGCATTCGCGCAAAGTTTGGAGCAGTATGTGACA
AATTTGCCGGGATTCAAATAGTACAGGAGAAGCGCAGAAATGACTTGTGT
ACAGAATGCTCCGTCATCCTCAGACGGTTTGAACCATTTACGAACAAATG
CGTACACGTTGCACCATTTCGAGACCTTAACGGGCCTCCGCTTCGTGCTC
AACACGGACAACTCGATTGTAGATATGCGAGGGCACTTGAGGCACATTTA
TTCAGGGCGCGTGCCTCTTTTACAGGGAATGGTGCCGGCCTCTCAACACC
CTGGCCGAGGATCCTGAGGAGGAGAAAAAGCTCATGTTCGGCATGCTATA
CTCCATCAAAGGACTAGTTGCGGCGTTAGGAAGCAAGGTTCGAGACACTG
TAGAGAGACTCCGTCAGCCTCCAGGGAGGAGCAACTTCACCTCCACGGAG
GCAAAGGTCGTCGATTGTCTTCCACTCATTCGGACCGCAGGAGAGGAGTT
GCTGGGCCTGGTATTCTTCCTAGTGGTAATGATTTACAATCTCTACATAT
TCGACCGTCGGATGAGATCTTGCGAGTCGAGTTCCGTTGCTTCACATTCG
AAGCGGCATTTAAAGAATATGAGATCGCTCGCGCAAGCTGTC back to top
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