EWM28399.1, cds2275 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|585110783|gb|EWM28399.1| (trafficking protein particle complex 1 [Nannochloropsis gaditana]) HSP 1 Score: 558.91 bits (1439), Expect = 0.000e+0 Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
Query: 1 MRSCESSSVASHSKRHLKNMRSLAQAVVRDTVERLRQPPGRSNFTSTEAKVVDCLPLIRTAGEELLGLVFFLVVMIYNLYIFDRRGACLFYREWCRPLNTLAEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAEPSVQDRRRRECRPFTPSIRAKFGAVCDKFAGIQIVQEKRRNDLCTAGGYVIVFNTISTQGTLEQSFGLAVRVIDANGEMKMTSK 268
MRSCESSSVASHSKRHLKNMRSLAQAVVRDTVERLRQPPGRSNFTSTEAKVVDCLPLIRTAGEELLGLVFFLVVMIYNLYIFDRRGACLFYREWCRPLNTLAEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAEPSVQDRRRRECRPFTPSIRAKFGAVCDKFAGIQIVQEKRRNDLCTAGGYVIVFNTISTQGTLEQSFGLAVRVIDANGEMKMTSK
Sbjct: 1 MRSCESSSVASHSKRHLKNMRSLAQAVVRDTVERLRQPPGRSNFTSTEAKVVDCLPLIRTAGEELLGLVFFLVVMIYNLYIFDRRGACLFYREWCRPLNTLAEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAEPSVQDRRRRECRPFTPSIRAKFGAVCDKFAGIQIVQEKRRNDLCTAGGYVIVFNTISTQGTLEQSFGLAVRVIDANGEMKMTSK 268
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|298712745|emb|CBJ33343.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 130.568 bits (327), Expect = 2.096e-34 Identity = 65/112 (58.04%), Postives = 82/112 (73.21%), Query Frame = 0
Query: 75 MIYNLYIFDRRGACLFYREWCRPLNTL--AEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAE 184
MIYNLYIF+R+G CL+YREW RP NTL A D EE++LMFGMLYS+K +V + + A S GL+ L+T++YTLHH ET +GLRFVLNTDN+ D+R LR +YS E
Sbjct: 1 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADDGEEQRLMFGMLYSLKEVVTKMSTDPA---SAGLHALKTDSYTLHHLETGSGLRFVLNTDNNAGDLRPTLRQLYSGIFVE 109
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|1173949868|gb|OQR97867.1| (trafficking protein particle complex subunit [Achlya hypogyna]) HSP 1 Score: 112.464 bits (280), Expect = 2.266e-27 Identity = 49/105 (46.67%), Postives = 73/105 (69.52%), Query Frame = 0
Query: 75 MIYNLYIFDRRGACLFYREWCRPLNTLA-EDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIY 178
MIYNLYIF+R GACL Y EW R + ++ D EEEK+LMFG+++S+K + + + +++ L +TNAYT HH ET +GLRF+L +DN+ D++ L+H+Y
Sbjct: 1 MIYNLYIFNRSGACLLYEEWNRSSDAISLSDAEEEKRLMFGLIFSLKEFLRKMAPSASATTAQSLKTFKTNAYTCHHMETASGLRFILTSDNNTGDLQDVLQHLY 105
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|669147808|ref|XP_008609466.1| (hypothetical protein SDRG_05525 [Saprolegnia diclina VS20] >gi|530739062|gb|EQC37304.1| hypothetical protein SDRG_05525 [Saprolegnia diclina VS20]) HSP 1 Score: 111.309 bits (277), Expect = 6.518e-27 Identity = 56/137 (40.88%), Postives = 82/137 (59.85%), Query Frame = 0
Query: 75 MIYNLYIFDRRGACLFYREWCRPLNTLA-EDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAE----PSVQDRRRR---ECRPFTPSIR 203
MIYNLYIF+R GACL Y EW R + + D EEEK+LMFG+++S+K + + + +SS L +T+ YT HH ET +GLRF+L +DN+ D++ L+H+Y E V D + +C+ F S+R
Sbjct: 1 MIYNLYIFNRAGACLLYEEWNRSSDAMTLSDAEEEKRLMFGLIFSLKEFLRKMAPTASTTSSQSLKTFKTDTYTCHHLETASGLRFILTSDNNTGDLQDVLQHLYGNLYVELVTKNPVHDAKSTKPIKCKLFRHSVR 137
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|813146639|ref|XP_012199875.1| (hypothetical protein SPRG_05908 [Saprolegnia parasitica CBS 223.65] >gi|641535462|gb|KDO29372.1| hypothetical protein SPRG_05908 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 110.923 bits (276), Expect = 8.881e-27 Identity = 56/137 (40.88%), Postives = 82/137 (59.85%), Query Frame = 0
Query: 75 MIYNLYIFDRRGACLFYREWCRPLNTLA-EDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAE----PSVQDRRRR---ECRPFTPSIR 203
MIYNLYIF+R GACL Y EW R + + D EEEK+LMFG+++S+K + + + +SS L +T+ YT HH ET +GLRF+L +DN+ D++ L+H+Y E V D + +C+ F S+R
Sbjct: 1 MIYNLYIFNRAGACLLYEEWNRSSDAMTLSDAEEEKRLMFGLIFSLKEFLRKMAPTASTTSSQSLKTFKTDTYTCHHLETASGLRFILTSDNNTGDLQDVLQHLYGNLYVELVTKNPVHDAKSTKPIKCKLFRHSVR 137
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|941817364|ref|XP_014330357.1| (PREDICTED: trafficking protein particle complex subunit 1 [Xiphophorus maculatus] >gi|962015825|ref|XP_014880133.1| PREDICTED: trafficking protein particle complex subunit 1 isoform X2 [Poecilia latipinna]) HSP 1 Score: 107.457 bits (267), Expect = 1.947e-25 Identity = 55/138 (39.86%), Postives = 81/138 (58.70%), Query Frame = 0
Query: 76 IYNLYIFDRRGACLFYREWCRPLNTLAEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAEPSVQDRRRRECRPFTPSIRAKFGAVCDKF 213
++NLYIFDR G+CLFY EW R +EE KLM+GML+SI+ V+ + ++ DG +T+ Y LH++ET +GL+FV+NTD S+ + R L+HIYS + V++ C+P + FG D F
Sbjct: 3 VHNLYIFDRNGSCLFYNEWNRK-KQAGISKDEEFKLMYGMLFSIRSFVSKMSPQDM---KDGFLSFQTSKYRLHYYETASGLKFVMNTDLSVSNARDTLQHIYSNLYVDLVVKNPLVPSCQPLDSEL---FGTRLDSF 133
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|658923300|ref|XP_008401363.1| (PREDICTED: trafficking protein particle complex subunit 1 [Poecilia reticulata] >gi|1039355673|ref|XP_017158979.1| PREDICTED: trafficking protein particle complex subunit 1 [Poecilia reticulata] >gi|1039355675|ref|XP_017158980.1| PREDICTED: trafficking protein particle complex subunit 1 [Poecilia reticulata]) HSP 1 Score: 107.071 bits (266), Expect = 2.260e-25 Identity = 55/138 (39.86%), Postives = 81/138 (58.70%), Query Frame = 0
Query: 76 IYNLYIFDRRGACLFYREWCRPLNTLAEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAEPSVQDRRRRECRPFTPSIRAKFGAVCDKF 213
++NLYIFDR G+CLFY EW R +EE KLM+GML+SI+ V+ + ++ DG +T+ Y LH++ET +GL+FV+NTD S+ + R L+HIYS + V++ C+P + FG D F
Sbjct: 3 VHNLYIFDRNGSCLFYSEWNRK-KQAGISKDEEFKLMYGMLFSIRSFVSKMSPQDM---KDGFLSFQTSKYRLHYYETASGLKFVMNTDLSVSNARDTLQHIYSNLYVDLVVKNPLVPSCQPLDSEL---FGTRLDSF 133
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|961948482|ref|XP_014868468.1| (PREDICTED: trafficking protein particle complex subunit 1 [Poecilia mexicana]) HSP 1 Score: 105.916 bits (263), Expect = 7.010e-25 Identity = 55/138 (39.86%), Postives = 81/138 (58.70%), Query Frame = 0
Query: 76 IYNLYIFDRRGACLFYREWCRPLNTLAEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAEPSVQDRRRRECRPFTPSIRAKFGAVCDKF 213
++NLYIFDR G+CLFY EW R +EE KLM+GML+SI+ V+ + ++ DG +T+ Y LH++ET +GL+FV+NTD S+ + R L+HIYS + V++ C+P + FG D F
Sbjct: 3 VHNLYIFDRNGSCLFYNEWNRK-KQAGISTDEEFKLMYGMLFSIRSFVSKMSPQDM---KDGFLSFQTSKYRLHYYETASGLKFVMNTDLSVSNARDTLQHIYSNLYVDLVVKNPLVPSCQPLDSEL---FGTRLDSF 133
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|698787694|ref|XP_009826879.1| (hypothetical protein H257_04175 [Aphanomyces astaci] >gi|574117968|gb|ETV83449.1| hypothetical protein H257_04175 [Aphanomyces astaci]) HSP 1 Score: 105.145 bits (261), Expect = 1.442e-24 Identity = 54/138 (39.13%), Postives = 80/138 (57.97%), Query Frame = 0
Query: 75 MIYNLYIFDRRGACLFYREWCRPLNTLA-EDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAE----PSVQDRRRR---ECRPFTPSIRA 204
MIYN YIF+R GACL Y EW R + + D EEEK+LMFG+++S+K + + + + L +T+ YT HH ET +GLRF+L+TDN D++ L+++Y E V D R +C+ F +I+A
Sbjct: 1 MIYNFYIFNRSGACLMYEEWNRSSDAMTLNDAEEEKRLMFGLIFSLKEFLRKMSPPTSTPQTHSLKTFKTDVYTCHHLETPSGLRFILSTDNQSGDLQEALQYMYGNLYVELVTKNPVHDARSTKPIKCKLFRANIKA 138
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|673030204|ref|XP_008869063.1| (hypothetical protein H310_05967 [Aphanomyces invadans] >gi|574475458|gb|ETW02458.1| hypothetical protein H310_05967 [Aphanomyces invadans]) HSP 1 Score: 103.605 bits (257), Expect = 5.161e-24 Identity = 54/138 (39.13%), Postives = 81/138 (58.70%), Query Frame = 0
Query: 75 MIYNLYIFDRRGACLFYREWCRPLNTLA-EDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAE-----PSVQDRRRR--ECRPFTPSIRA 204
MIYN YIF+R GACL Y EW R + + D EEEK+LMFG+++S+K + + ++ + L +T+ YT HH ET +GLRF+L+TD + D++ L+H+Y E P+ R +C+ F SI+A
Sbjct: 1 MIYNFYIFNRSGACLMYEEWNRSSDAITLNDAEEEKRLMFGLIFSLKEFLRKMSPPSSTPQTHSLKTFKTDVYTCHHLETPSGLRFILSTDCASGDLQDALQHMYGNLYVELVTKNPAHDARSGNPIKCKLFRASIKA 138 The following BLAST results are available for this feature:
BLAST of EWM28399.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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