EWM28399.1, cds2275 (CDS) Nannochloropsis gaditana

Overview
NameEWM28399.1
Unique Namecds2275
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:13675..13755 -
Alignment locationCM002459.1:12741..12914 -
Alignment locationCM002459.1:12530..12661 -
Alignment locationCM002459.1:12256..12406 -
Alignment locationCM002459.1:11965..12114 -
Alignment locationCM002459.1:11611..11729 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28399.1
Producttrafficking protein particle complex 1
Orig transcript idgnl|cribi|Naga_100206g3.1431.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:13675..13755 -
CM002459.1supercontigCM002459.1:12741..12914 -
CM002459.1supercontigCM002459.1:12530..12661 -
CM002459.1supercontigCM002459.1:12256..12406 -
CM002459.1supercontigCM002459.1:11965..12114 -
CM002459.1supercontigCM002459.1:11611..11729 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006888ER to Golgi vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0005794Golgi apparatus
GO:0016020membrane
GO:0005801cis-Golgi network
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR007233Sybindin
Homology
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|585110783|gb|EWM28399.1| (trafficking protein particle complex 1 [Nannochloropsis gaditana])

HSP 1 Score: 558.91 bits (1439), Expect = 0.000e+0
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0
Query:    1 MRSCESSSVASHSKRHLKNMRSLAQAVVRDTVERLRQPPGRSNFTSTEAKVVDCLPLIRTAGEELLGLVFFLVVMIYNLYIFDRRGACLFYREWCRPLNTLAEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAEPSVQDRRRRECRPFTPSIRAKFGAVCDKFAGIQIVQEKRRNDLCTAGGYVIVFNTISTQGTLEQSFGLAVRVIDANGEMKMTSK 268
            MRSCESSSVASHSKRHLKNMRSLAQAVVRDTVERLRQPPGRSNFTSTEAKVVDCLPLIRTAGEELLGLVFFLVVMIYNLYIFDRRGACLFYREWCRPLNTLAEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAEPSVQDRRRRECRPFTPSIRAKFGAVCDKFAGIQIVQEKRRNDLCTAGGYVIVFNTISTQGTLEQSFGLAVRVIDANGEMKMTSK
Sbjct:    1 MRSCESSSVASHSKRHLKNMRSLAQAVVRDTVERLRQPPGRSNFTSTEAKVVDCLPLIRTAGEELLGLVFFLVVMIYNLYIFDRRGACLFYREWCRPLNTLAEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAEPSVQDRRRRECRPFTPSIRAKFGAVCDKFAGIQIVQEKRRNDLCTAGGYVIVFNTISTQGTLEQSFGLAVRVIDANGEMKMTSK 268          
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|298712745|emb|CBJ33343.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 130.568 bits (327), Expect = 2.096e-34
Identity = 65/112 (58.04%), Postives = 82/112 (73.21%), Query Frame = 0
Query:   75 MIYNLYIFDRRGACLFYREWCRPLNTL--AEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAE 184
            MIYNLYIF+R+G CL+YREW RP NTL  A D  EE++LMFGMLYS+K +V  + +  A   S GL+ L+T++YTLHH ET +GLRFVLNTDN+  D+R  LR +YS    E
Sbjct:    1 MIYNLYIFNRKGKCLYYREWNRPQNTLENAADDGEEQRLMFGMLYSLKEVVTKMSTDPA---SAGLHALKTDSYTLHHLETGSGLRFVLNTDNNAGDLRPTLRQLYSGIFVE 109          
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|1173949868|gb|OQR97867.1| (trafficking protein particle complex subunit [Achlya hypogyna])

HSP 1 Score: 112.464 bits (280), Expect = 2.266e-27
Identity = 49/105 (46.67%), Postives = 73/105 (69.52%), Query Frame = 0
Query:   75 MIYNLYIFDRRGACLFYREWCRPLNTLA-EDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIY 178
            MIYNLYIF+R GACL Y EW R  + ++  D EEEK+LMFG+++S+K  +  +    + +++  L   +TNAYT HH ET +GLRF+L +DN+  D++  L+H+Y
Sbjct:    1 MIYNLYIFNRSGACLLYEEWNRSSDAISLSDAEEEKRLMFGLIFSLKEFLRKMAPSASATTAQSLKTFKTNAYTCHHMETASGLRFILTSDNNTGDLQDVLQHLY 105          
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|669147808|ref|XP_008609466.1| (hypothetical protein SDRG_05525 [Saprolegnia diclina VS20] >gi|530739062|gb|EQC37304.1| hypothetical protein SDRG_05525 [Saprolegnia diclina VS20])

HSP 1 Score: 111.309 bits (277), Expect = 6.518e-27
Identity = 56/137 (40.88%), Postives = 82/137 (59.85%), Query Frame = 0
Query:   75 MIYNLYIFDRRGACLFYREWCRPLNTLA-EDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAE----PSVQDRRRR---ECRPFTPSIR 203
            MIYNLYIF+R GACL Y EW R  + +   D EEEK+LMFG+++S+K  +  +    + +SS  L   +T+ YT HH ET +GLRF+L +DN+  D++  L+H+Y     E      V D +     +C+ F  S+R
Sbjct:    1 MIYNLYIFNRAGACLLYEEWNRSSDAMTLSDAEEEKRLMFGLIFSLKEFLRKMAPTASTTSSQSLKTFKTDTYTCHHLETASGLRFILTSDNNTGDLQDVLQHLYGNLYVELVTKNPVHDAKSTKPIKCKLFRHSVR 137          
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|813146639|ref|XP_012199875.1| (hypothetical protein SPRG_05908 [Saprolegnia parasitica CBS 223.65] >gi|641535462|gb|KDO29372.1| hypothetical protein SPRG_05908 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 110.923 bits (276), Expect = 8.881e-27
Identity = 56/137 (40.88%), Postives = 82/137 (59.85%), Query Frame = 0
Query:   75 MIYNLYIFDRRGACLFYREWCRPLNTLA-EDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAE----PSVQDRRRR---ECRPFTPSIR 203
            MIYNLYIF+R GACL Y EW R  + +   D EEEK+LMFG+++S+K  +  +    + +SS  L   +T+ YT HH ET +GLRF+L +DN+  D++  L+H+Y     E      V D +     +C+ F  S+R
Sbjct:    1 MIYNLYIFNRAGACLLYEEWNRSSDAMTLSDAEEEKRLMFGLIFSLKEFLRKMAPTASTTSSQSLKTFKTDTYTCHHLETASGLRFILTSDNNTGDLQDVLQHLYGNLYVELVTKNPVHDAKSTKPIKCKLFRHSVR 137          
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|941817364|ref|XP_014330357.1| (PREDICTED: trafficking protein particle complex subunit 1 [Xiphophorus maculatus] >gi|962015825|ref|XP_014880133.1| PREDICTED: trafficking protein particle complex subunit 1 isoform X2 [Poecilia latipinna])

HSP 1 Score: 107.457 bits (267), Expect = 1.947e-25
Identity = 55/138 (39.86%), Postives = 81/138 (58.70%), Query Frame = 0
Query:   76 IYNLYIFDRRGACLFYREWCRPLNTLAEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAEPSVQDRRRRECRPFTPSIRAKFGAVCDKF 213
            ++NLYIFDR G+CLFY EW R         +EE KLM+GML+SI+  V+ +  ++     DG    +T+ Y LH++ET +GL+FV+NTD S+ + R  L+HIYS    +  V++     C+P    +   FG   D F
Sbjct:    3 VHNLYIFDRNGSCLFYNEWNRK-KQAGISKDEEFKLMYGMLFSIRSFVSKMSPQDM---KDGFLSFQTSKYRLHYYETASGLKFVMNTDLSVSNARDTLQHIYSNLYVDLVVKNPLVPSCQPLDSEL---FGTRLDSF 133          
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|658923300|ref|XP_008401363.1| (PREDICTED: trafficking protein particle complex subunit 1 [Poecilia reticulata] >gi|1039355673|ref|XP_017158979.1| PREDICTED: trafficking protein particle complex subunit 1 [Poecilia reticulata] >gi|1039355675|ref|XP_017158980.1| PREDICTED: trafficking protein particle complex subunit 1 [Poecilia reticulata])

HSP 1 Score: 107.071 bits (266), Expect = 2.260e-25
Identity = 55/138 (39.86%), Postives = 81/138 (58.70%), Query Frame = 0
Query:   76 IYNLYIFDRRGACLFYREWCRPLNTLAEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAEPSVQDRRRRECRPFTPSIRAKFGAVCDKF 213
            ++NLYIFDR G+CLFY EW R         +EE KLM+GML+SI+  V+ +  ++     DG    +T+ Y LH++ET +GL+FV+NTD S+ + R  L+HIYS    +  V++     C+P    +   FG   D F
Sbjct:    3 VHNLYIFDRNGSCLFYSEWNRK-KQAGISKDEEFKLMYGMLFSIRSFVSKMSPQDM---KDGFLSFQTSKYRLHYYETASGLKFVMNTDLSVSNARDTLQHIYSNLYVDLVVKNPLVPSCQPLDSEL---FGTRLDSF 133          
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|961948482|ref|XP_014868468.1| (PREDICTED: trafficking protein particle complex subunit 1 [Poecilia mexicana])

HSP 1 Score: 105.916 bits (263), Expect = 7.010e-25
Identity = 55/138 (39.86%), Postives = 81/138 (58.70%), Query Frame = 0
Query:   76 IYNLYIFDRRGACLFYREWCRPLNTLAEDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAEPSVQDRRRRECRPFTPSIRAKFGAVCDKF 213
            ++NLYIFDR G+CLFY EW R         +EE KLM+GML+SI+  V+ +  ++     DG    +T+ Y LH++ET +GL+FV+NTD S+ + R  L+HIYS    +  V++     C+P    +   FG   D F
Sbjct:    3 VHNLYIFDRNGSCLFYNEWNRK-KQAGISTDEEFKLMYGMLFSIRSFVSKMSPQDM---KDGFLSFQTSKYRLHYYETASGLKFVMNTDLSVSNARDTLQHIYSNLYVDLVVKNPLVPSCQPLDSEL---FGTRLDSF 133          
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|698787694|ref|XP_009826879.1| (hypothetical protein H257_04175 [Aphanomyces astaci] >gi|574117968|gb|ETV83449.1| hypothetical protein H257_04175 [Aphanomyces astaci])

HSP 1 Score: 105.145 bits (261), Expect = 1.442e-24
Identity = 54/138 (39.13%), Postives = 80/138 (57.97%), Query Frame = 0
Query:   75 MIYNLYIFDRRGACLFYREWCRPLNTLA-EDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAE----PSVQDRRRR---ECRPFTPSIRA 204
            MIYN YIF+R GACL Y EW R  + +   D EEEK+LMFG+++S+K  +  +    +   +  L   +T+ YT HH ET +GLRF+L+TDN   D++  L+++Y     E      V D R     +C+ F  +I+A
Sbjct:    1 MIYNFYIFNRSGACLMYEEWNRSSDAMTLNDAEEEKRLMFGLIFSLKEFLRKMSPPTSTPQTHSLKTFKTDVYTCHHLETPSGLRFILSTDNQSGDLQEALQYMYGNLYVELVTKNPVHDARSTKPIKCKLFRANIKA 138          
BLAST of EWM28399.1 vs. NCBI_GenBank
Match: gi|673030204|ref|XP_008869063.1| (hypothetical protein H310_05967 [Aphanomyces invadans] >gi|574475458|gb|ETW02458.1| hypothetical protein H310_05967 [Aphanomyces invadans])

HSP 1 Score: 103.605 bits (257), Expect = 5.161e-24
Identity = 54/138 (39.13%), Postives = 81/138 (58.70%), Query Frame = 0
Query:   75 MIYNLYIFDRRGACLFYREWCRPLNTLA-EDPEEEKKLMFGMLYSIKGLVAALGSKNAPSSSDGLNHLRTNAYTLHHFETLTGLRFVLNTDNSIVDMRGHLRHIYSACCAE-----PSVQDRRRR--ECRPFTPSIRA 204
            MIYN YIF+R GACL Y EW R  + +   D EEEK+LMFG+++S+K  +  +   ++   +  L   +T+ YT HH ET +GLRF+L+TD +  D++  L+H+Y     E     P+   R     +C+ F  SI+A
Sbjct:    1 MIYNFYIFNRSGACLMYEEWNRSSDAITLNDAEEEKRLMFGLIFSLKEFLRKMSPPSSTPQTHSLKTFKTDVYTCHHLETPSGLRFILSTDCASGDLQDALQHMYGNLYVELVTKNPAHDARSGNPIKCKLFRASIKA 138          
The following BLAST results are available for this feature:
BLAST of EWM28399.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110783|gb|EWM28399.1|0.000e+0100.00trafficking protein particle complex 1 [Nannochlor... [more]
gi|298712745|emb|CBJ33343.1|2.096e-3458.04conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173949868|gb|OQR97867.1|2.266e-2746.67trafficking protein particle complex subunit [Achl... [more]
gi|669147808|ref|XP_008609466.1|6.518e-2740.88hypothetical protein SDRG_05525 [Saprolegnia dicli... [more]
gi|813146639|ref|XP_012199875.1|8.881e-2740.88hypothetical protein SPRG_05908 [Saprolegnia paras... [more]
gi|941817364|ref|XP_014330357.1|1.947e-2539.86PREDICTED: trafficking protein particle complex su... [more]
gi|658923300|ref|XP_008401363.1|2.260e-2539.86PREDICTED: trafficking protein particle complex su... [more]
gi|961948482|ref|XP_014868468.1|7.010e-2539.86PREDICTED: trafficking protein particle complex su... [more]
gi|698787694|ref|XP_009826879.1|1.442e-2439.13hypothetical protein H257_04175 [Aphanomyces astac... [more]
gi|673030204|ref|XP_008869063.1|5.161e-2439.13hypothetical protein H310_05967 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2283rna2283Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications