rna2282, rna2282 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2282
Unique Name	rna2282
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1212
Alignment location	CM002459.1:8859..11223 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100206g4.1433.mrna
Orig protein id	gnl\|cribi\|Naga_100206g4.1433
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:8859..11223 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100206g4	gene2180	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2282	rna2282-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28401.1	cds2274	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:8859..11223-
coding sequence from alignment at CM002459.1:8859..11223-

mRNA sequence

>rna2282 ID=rna2282|Name=rna2282|organism=Nannochloropsis gaditana|type=mRNA|length=1212bp
GACTACCTCCTCACATCTCTGGTCCGCTTTTCACGTAGTTTTTGTGCTCA
TTTCAAGGAAAGTAGCGTAATATCTACCTTGAGGAGCGATGATGGGGCGG
GGGCGGGGCCGCGGTGGACGTTTTGGAGGACGGGGCGGAGTGCCCGGCGG
TGGAGGTCTCACAGCGCTCGACCATCTGCGAGACACAGCAGAGGAGATGG
GGCTAGATCCTCGCGCCGCTTCCGGCTCTACGCAACAGGAACCGCTGCCT
TCCTACCCATATATTCCTATATATCCGCCCAGGCCGTTGACGGAGGATGA
GGGAATAAAAATTCAGGCGCAAAGAGAGTTAGTGCACTGGTGGCAACATT
CGGTTTATTACCTTCAACCCGCTGCACGCGCTGCAACTGTAACGAAGGAG
ATAACTCGCTACTCAGATAGATATAGAGGAACTCTTGAAAACGATGGAAG
CAGAGGGCCGGAGGCAGAGAAGGACGGCGTGAAACGAAGTAGACGTGCGT
CACTGTGGGAGGTCATCCACGTGCCGGAGCCCAAGAGCGATAGTGCGGTC
TACATTCCATTTGAGCTCTACCCTCGTGCAAAATCCTCAATCCCCCGCAG
AAGGGAGAAAGCATTGACAAAAACTGGCTTTCGAAATAGAGGCAAGGGGG
CCGCGGCGACGGCGACCATGGCAAAAGTACGTGTCTGGGAAAGGGACTAA
CAAATTACCATTCACATATTTGATTCAAACTTATTTTATTTGTCTGCCAT
AATCCATAGGAGCCTAGGTGCCGGGTGATATTGGAGGACGAGGAAGAAGA
AGCAGTAGGGGAAGGAGAGGAGGAAGAAGAAGTAAGTGGTACGAAGAAAT
GGAAGCGAAAGCTCACTCAAGATGAGCTCGGTGAAAAGGACCCTGTCTCT
GGCAACAATCTGAGGAGCAAGAAAAGGGACGAAGACGAAGAAGATGAGGA
GGAGGAGGAGGAGGAGGGTTTGGTCGAGGAGGAAGAGGAGGAGGAGGTTG
ACGAGGATGATGACTATGCCATGAATCACTACGCGAGCGATGGCTACGAC
GGGATGGATGACGGCGACGAAGGAGGTGGTGACAACGAGGCAATCTTTTA
AAAGAAATTTGAGATGATCACGTGCATGTAGAAGATGGCGGAAAGAAAAA
TTGAGGCGCATTTCCCTCATTGATAAGTGATTCTTCCTTTGCATGATTTG
AGTGTCGTTCCA

protein sequence of rna2282

>rna2282-protein ID=rna2282-protein|Name=rna2282|organism=Nannochloropsis gaditana|type=polypeptide|length=489bp
MPPLHRINAACVAVMAAMVSRITSSYALATDIQDPLLPSNFTQTSCSRSS
KAANIMDCTYEGHLIHVTTVDAHTNVEALGSKIWSDLSTGEMEVEAPGFK
LRCLISRGEKDFDDQPCEVDTSWRRKPDADYSVEASEVPASMASPSSPEH
PSFAVSLLRGARTLEASTDLAGPQPATQPFDCRRTAAGRNCTDAGGQWAH
VERNEDGGTHVTAPGVDIRTGGEGGGDVRVDAWGFHLVCRKESATNKTTC
GASNDWFGKGGAGRTGDGPAPVSAARPRGPEEDVPDPVMHLAPQHRADRP
AEGSGSQGRGSEGGSRGMASGSSTTITDGPFDRFQPASPAGTVGERLTTT
LGQKASEPGTVASNILSKEIESASAPATILVGVVEDPPPHRPSLAPKSPL
HGSTAPSTPDPRDPLWVSNPKNCTRAFKGEGEDCWDDEHWVNGRTGTSGR
REGPGGESGVEVTSAGRADLPVSAGVEKEDSDATDAGRR

mRNA from alignment at CM002459.1:8859..11223-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2282 ID=rna2282|Name=rna2282|organism=Nannochloropsis gaditana|type=mRNA|length=2365bp|location=Sequence derived from alignment at CM002459.1:8859..11223- (Nannochloropsis gaditana)
TACGCACAAGCTGACATGAAAGCCATTGAATGCTTGCAGAATTTTGTTCT
CTGATTGTCTCTTCTTGTGGTCAGCCGGCTTGAACGTCGTCCGATTAGTG
CCTTACTAGTATGAGCCTTAGCCCACCCGTCTCTCATACATTTTATTGAC
CCACCCACAGAATATATAGACATGCCACCCCTACATAGGATTAATGCCGC
TTGTGTTGCAGTAATGGCAGCCATGGTGTCTCGAATTACCTCTTCCTACG
CATTAGCCACAGACATTCAGGATCCTCTGTTGCCTTCCAATTTCACACAA
ACAAGTACGTGCCCACATTTGAGAGTAGACTTTTTTTTCATATCGTGTAT
AAGTTACAAGCTCTACTTAAAGATTCTATCAGCATTTTCTTCTTACTCCT
TGCTGTGGCCCGGATATCTAAAAGAAAGTCTGCACTCTATTCACAATGTT
CTTCGGATCTGTCCGACCTCCACTCTTGCGACACATTCCCCCATGGGAAT
GTGTCTACACGGCAGCAAGGAAGAAAAATCATTTTCTTTATTGCAAACAG
ATTTTTGTAGTCAGTTTCCCTCTCTAAATCTGGATATTCCGCACACATTT
CCTCGGTGCAGGTTGCTCTCGCTCGTCTAAAGCGGCCAATATTATGGACT
GTACATATGAAGGCCATCTTATACACGTAACAACTGTCGACGCACATACA
AACGTGGAAGCACTGGGCTCTAAAATATGGAGTGACTTGTCGACAGGAGA
GATGGAAGTGGAGGCACCTGGATTCAAGTTGAGATGTTTGATAAGTAGAG
GAGAAAAGGATTTTGATGACCAACCTTGTGAGGTTGACACGTCCTGGAGA
AGGAAGCCTGACGCAGATTATTCCGTGGAAGCATCAGAAGTGCCCGCCTC
CATGGCATCTCCATCCTCACCGGAGCATCCTTCTTTCGCGGTCTCGCTTC
TTCGCGGGGCGCGTACCCTGGAAGCTAGCACCGACCTGGCCGGGCCCCAG
CCGGCGACTCAGCCGTTTGACTGCCGAAGGACAGCAGCCGGTCGTAACTG
CACGGACGCAGGGGGACAGTGGGCACATGTGGAGAGGAACGAAGACGGCG
GCACGCACGTGACGGCGCCCGGCGTGGACATCAGGACGGGGGGGGAAGGC
GGGGGAGACGTGCGGGTGGACGCCTGGGGGTTCCATCTCGTATGCCGAAA
GGAGAGTGCGACGAACAAGACCACCTGTGGGGCCAGCAACGACTGGTTTG
GAAAGGGTGGGGCGGGACGCACGGGCGATGGGCCGGCTCCGGTCTCGGCA
GCCAGGCCCAGGGGGCCGGAGGAGGACGTGCCCGACCCTGTCATGCACTT
AGCGCCCCAGCACCGGGCAGACAGACCCGCGGAAGGCAGCGGCAGCCAAG
GTAGAGGCAGTGAGGGTGGGAGCAGGGGGATGGCTTCAGGCAGCTCCACG
ACCATCACGGACGGGCCTTTCGACAGGTTTCAACCGGCGTCTCCTGCTGG
CACGGTGGGGGAAAGGCTGACTACCACACTTGGACAAAAAGCCTCTGAAC
CGGGCACTGTTGCATCAAATATTCTGTCTAAGGAGATAGAAAGCGCCTCT
GCTCCGGCCACGATTCTTGTCGGGGTGGTAGAGGACCCCCCCCCCCACCG
TCCGTCGCTTGCACCAAAGTCTCCCTTACATGGCTCGACCGCTCCTTCCA
CCCCCGACCCCCGCGATCCCCTCTGGGTGTCAAACCCGAAGAACTGTACG
CGGGCTTTCAAGGGGGAAGGGGAAGACTGCTGGGATGACGAGCACTGGGT
AAACGGACGCACGGGCACGAGTGGAAGGAGGGAGGGACCCGGAGGAGAGA
GTGGAGTGGAGGTAACTAGTGCAGGCAGGGCCGATTTGCCCGTATCCGCG
GGCGTTGAAAAGGAAGATAGCGATGCGACAGATGCTGGGCGAAGATAAGA
CATGGCGCAGTAAAGGAAATGATTGTGGCCGGCCCCATGCAATACGTCGT
GGGAGAGACGCTCTACCTTGAGAGAGGACCGCGGAGACAGACGTGAGAGA
GGAGGTTTCATGAGGCGACAGGGTGCTGGTGGTCGGTTGACTTTTTAATT
GGACGTAAGTTACCTCCTTTAAAATGTTTAGAGGGAGATCGCCTCTGTAG
AAAGCAATATTCAGGCAGAAATGATTATTTTGGCATGGGAAAAGGTCACA
CGGGCCTTGTCATCTTGAGTCGTTGACACAATAGCAAATTTTGTTAATAG
ATGCATGTTTGAAAGTGGGAAAGTGGTGGCTTTTCTCACCGCGAGGTGAG
AAAAGCATACATGGAACGACACTCAAATCATGCAAAGGAAGAATCACTTA
TCAATGAGGGAAATG

Coding sequence (CDS) from alignment at CM002459.1:8859..11223-

>rna2282 ID=rna2282|Name=rna2282|organism=Nannochloropsis gaditana|type=CDS|length=2940bp|location=Sequence derived from alignment at CM002459.1:8859..11223- (Nannochloropsis gaditana)
GTTGCTCTCGCTCGTCTAAAGCGGCCAATATTATGGACTGTACATATGAA
GGCCATCTTATACACGTAACAACTGTCGACGCACATACAAACGTGGAAGC
ACTGGGCTCTAAAATATGGAGTGACTTGTCGACAGGAGAGATGGAAGTGG
AGGCACCTGGATTCAAGTTGAGATGTTTGATAAGTAGAGGAGAAAAGGAT
TTTGATGACCAACCTTGTGAGGTTGACACGTCCTGGAGAAGGAAGCCTGA
CGCAGATTATTCCGTGGAAGCATCAGAAGTGCCCGCCTCCATGGCATCTC
CATCCTCACCGGAGCATCCTTCTTTCGCGGTCTCGCTTCTTCGCGGGGCG
CGTACCCTGGAAGCTAGCACCGACCTGGCCGGGCCCCAGCCGGCGACTCA
GCCGTTTGACTGCCGAAGGACAGCAGCCGGTCGTAACTGCACGGACGCAG
GGGGACAGTGGGCACATGTGGAGAGGAACGAAGACGGCGGCACGCACGTG
ACGGCGCCCGGCGTGGACATCAGGACGGGGGGGGAAGGCGGGGGAGACGT
GCGGGTGGACGCCTGGGGGTTCCATCTCGTATGCCGAAAGGAGAGTGCGA
CGAACAAGACCACCTGTGGGGCCAGCAACGACTGGTTTGGAAAGGGTGGG
GCGGGACGCACGGGCGATGGGCCGGCTCCGGTCTCGGCAGCCAGGCCCAG
GGGGCCGGAGGAGGACGTGCCCGACCCTGTCATGCACTTAGCGCCCCAGC
ACCGGGCAGACAGACCCGCGGAAGGCAGCGGCAGCCAAGGTAGAGGCAGT
GAGGGTGGGAGCAGGGGGATGGCTTCAGGCAGCTCCACGACCATCACGGA
CGGGCCTTTCGACAGGTTTCAACCGGCGTCTCCTGCTGGCACGGTGGGGG
AAAGGCTGACTACCACACTTGGACAAAAAGCCTCTGAACCGGGCACTGTT
GCATCAAATATTCTGTCTAAGGAGATAGAAAGCGCCTCTGCTCCGGCCAC
GATTCTTGTCGGGGTGGTAGAGGACCCCCCCCCCCACCGTCCGTCGCTTG
CACCAAAGTCTCCCTTACATGGCTCGACCGCTCCTTCCACCCCCGACCCC
CGCGATCCCCTCTGGGTGTCAAACCCGAAGAACTGTACGCGGGCTTTCAA
GGGGGAAGGGGAAGACTGCTGGGATGACGAGCACTGGGTAAACGGACGCA
CGGGCACGAGTGGAAGGAGGGAGGGACCCGGAGGAGAGAGTGGAGTGGAG
GTAACTAGTGCAGGCAGGGCCGATTTGCCCGTATCCGCGGGCGTTGAAAA
GGAAGATAGCGATGCGACAGATGCTGGGCGAAGATAAATGCCACCCCTAC
ATAGGATTAATGCCGCTTGTGTTGCAGTAATGGCAGCCATGGTGTCTCGA
ATTACCTCTTCCTACGCATTAGCCACAGACATTCAGGATCCTCTGTTGCC
TTCCAATTTCACACAAACAAGTTGCTCTCGCTCGTCTAAAGCGGCCAATA
TTATGGACTGTACATATGAAGGCCATCTTATACACGTAACAACTGTCGAC
GCACATACAAACGTGGAAGCACTGGGCTCTAAAATATGGAGTGACTTGTC
GACAGGAGAGATGGAAGTGGAGGCACCTGGATTCAAGTTGAGATGTTTGA
TAAGTAGAGGAGAAAAGGATTTTGATGACCAACCTTGTGAGGTTGACACG
TCCTGGAGAAGGAAGCCTGACGCAGATTATTCCGTGGAAGCATCAGAAGT
GCCCGCCTCCATGGCATCTCCATCCTCACCGGAGCATCCTTCTTTCGCGG
TCTCGCTTCTTCGCGGGGCGCGTACCCTGGAAGCTAGCACCGACCTGGCC
GGGCCCCAGCCGGCGACTCAGCCGTTTGACTGCCGAAGGACAGCAGCCGG
TCGTAACTGCACGGACGCAGGGGGACAGTGGGCACATGTGGAGAGGAACG
AAGACGGCGGCACGCACGTGACGGCGCCCGGCGTGGACATCAGGACGGGG
GGGGAAGGCGGGGGAGACGTGCGGGTGGACGCCTGGGGGTTCCATCTCGT
ATGCCGAAAGGAGAGTGCGACGAACAAGACCACCTGTGGGGCCAGCAACG
ACTGGTTTGGAAAGGGTGGGGCGGGACGCACGGGCGATGGGCCGGCTCCG
GTCTCGGCAGCCAGGCCCAGGGGGCCGGAGGAGGACGTGCCCGACCCTGT
CATGCACTTAGCGCCCCAGCACCGGGCAGACAGACCCGCGGAAGGCAGCG
GCAGCCAAGGTAGAGGCAGTGAGGGTGGGAGCAGGGGGATGGCTTCAGGC
AGCTCCACGACCATCACGGACGGGCCTTTCGACAGGTTTCAACCGGCGTC
TCCTGCTGGCACGGTGGGGGAAAGGCTGACTACCACACTTGGACAAAAAG
CCTCTGAACCGGGCACTGTTGCATCAAATATTCTGTCTAAGGAGATAGAA
AGCGCCTCTGCTCCGGCCACGATTCTTGTCGGGGTGGTAGAGGACCCCCC
CCCCCACCGTCCGTCGCTTGCACCAAAGTCTCCCTTACATGGCTCGACCG
CTCCTTCCACCCCCGACCCCCGCGATCCCCTCTGGGTGTCAAACCCGAAG
AACTGTACGCGGGCTTTCAAGGGGGAAGGGGAAGACTGCTGGGATGACGA
GCACTGGGTAAACGGACGCACGGGCACGAGTGGAAGGAGGGAGGGACCCG
GAGGAGAGAGTGGAGTGGAGGTAACTAGTGCAGGCAGGGCCGATTTGCCC
GTATCCGCGGGCGTTGAAAAGGAAGATAGCGATGCGACAGATGCTGGGCG
AAGATAAATGCCACCCCTACATAGGATTAATGCCGCTTGTGTTGCAGTAA
TGGCAGCCATGGTGTCTCGAATTACCTCTTCCTACGCATTAGCCACAGAC
ATTCAGGATCCTCTGTTGCCTTCCAATTTCACACAAACAA

Synonyms

Publications