rna2281, rna2281 (mRNA) Nannochloropsis gaditana

Overview
Namerna2281
Unique Namerna2281
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1425
Alignment locationCM002459.1:7326..8912 +

Link to JBrowse

Properties
Property NameValue
ProductDNA-directed RNA polymerase III, subunit Rpc31
Orig transcript idgnl|cribi|Naga_100206g5.1434.mrna
Orig protein idgnl|cribi|Naga_100206g5.1434
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:7326..8912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100206g5gene2179Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2281rna2281-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28402.1cds2273Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2281 ID=rna2281|Name=rna2281|organism=Nannochloropsis gaditana|type=mRNA|length=1425bp
GACTACCTCCTCACATCTCTGGTCCGCTTTTCACGTAGTTTTTGTGCTCA
TTTCAAGGAAAGTAGCGTAATATCTACCTTGAGGAGCGATGATGGGGCGG
GGGCGGGGCCGCGGTGGACGTTTTGGAGGACGGGGCGGAGTGCCCGGCGG
TGGAGGTCTCACAGCGCTCGACCATCTGCGAGACACAGCAGAGGAGATGG
GGCTAGATCCTCGCGCCGCTTCCGGCTCTACGCAACAGGAACCGCTGCCT
TCCTACCCATATATTCCTATATATCCGCCCAGGCCGTTGACGGAGGATGA
GGGAATAAAAATTCAGGCGCAAAGAGAGTTAGTGCACTGGTGGCAACATT
CGGTTTATTACCTTCAACCCGCTGCACGCGCTGCAACTGTAACGAAGGAG
ATAACTCGCTACTCAGATAGATATAGAGGAACTCTTGAAAACGATGGAAG
CAGAGGGCCGGAGGCAGAGAAGGACGGCGTGAAACGAAGTAGACGTGCGT
CACTGTGGGAGGTCATCCACGTGCCGGAGCCCAAGGTCCGTGTGCAAGGG
CCCATGGGAATGGCGGTGACTTTATTCGGTCGCGTACTTTGCGAGTGGCT
AATGGTCACACAAGGAAGATTCTTTGCCGAGAGAGAAGGACTTTGATGGA
GCATTTCTGTCTCCTTCCCGTCGCCTAAGCCAAGGAAATCTCAGCCTGAA
CTTACTAGTGTCGCATATCTCTTGTTTATCCTGTCACTTGTCTTACAGAG
CGATAGTGCGGTCTACATTCCATTTGAGCTCTACCCTCGTGCAAAATCCT
CAATCCCCCGCAGAAGGGAGAAAGCATTGACAAAAACTGGCTTTCGAAAT
AGAGGCAAGGGGGCCGCGGCGACGGCGACCATGGCAAAAGTACGTGTCTG
GGAAAGGGACTAACAAATTACCATTCACATATTTGATTCAAACTTATTTT
ATTTGTCTGCCATAATCCATAGGAGCCTAGGTGCCGGGTGATATTGGAGG
ACGAGGAAGAAGAAGCAGTAGGGGAAGGAGAGGAGGAAGAAGAAGTAAGT
GGTACGAAGAAATGGAAGCGAAAGCTCACTCAAGATGAGCTCGGTGAAAA
GGACCCTGTCTCTGGCAACAATCTGAGGAGCAAGAAAAGGGACGAAGACG
AAGAAGATGAGGAGGAGGAGGAGGAGGAGGGTTTGGTCGAGGAGGAAGAG
GAGGAGGAGGTTGACGAGGATGATGACTATGCCATGAATCACTACGCGAG
CGATGGCTACGACGGGATGGATGACGGCGACGAAGGAGGTGGTGACAACG
AGGCAATCTTTTAAAAGAAATTTGAGATGATCACGTGCATGTAGAAGATG
GCGGAAAGAAAAATTGAGGCGCATTTCCCTCATTGATAAGTGATTCTTCC
TTTGCATGATTTGAGTGTCGTTCCA
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protein sequence of rna2281

>rna2281-protein ID=rna2281-protein|Name=rna2281|organism=Nannochloropsis gaditana|type=polypeptide|length=203bp
MMGRGRGRGGRFGGRGGVPGGGGLTALDHLRDTAEEMGLDPRAASGSTQQ
EPLPSYPYIPIYPPRPLTEDEGIKIQAQRELVHWWQHSVYYLQPAARAAT
VTKEITRYSDRYRGTLENDGSRGPEAEKDGVKRSRRASLWEVIHVPEPKS
DSAVYIPFELYPRAKSSIPRRREKALTKTGFRNRGKGAAATATMAKVRVW
ERD
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mRNA from alignment at CM002459.1:7326..8912+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2281 ID=rna2281|Name=rna2281|organism=Nannochloropsis gaditana|type=mRNA|length=1587bp|location=Sequence derived from alignment at CM002459.1:7326..8912+ (Nannochloropsis gaditana)
GACTACCTCCTCACATCTCTGGTCCGCTTTTCACGTAGTTTTTGTGCTCA
TTTCAAGGAAAGTAGCGTAATATCTACCTTGAGGAGCGAtgatggggcgg
gggcggggccgcggTGGACGttttggaggacggggcggagtGCCCGGCGG
TGGAGGTCTCACAGCGCTCGACCATCTGCGAGACACAgcagaggagatgg
ggcTAGATCCTCGCGCCGCTTCCGGCTCTACGCAACAGGAACCGCTGCCT
TCCTACCCATATATTCCTATATATCCGCCCAGGCCGTTGacggaggatga
gggaataAAAATTCAGGCGCAAAGAGAGTTAGGTACGTGGGAGATGGtag
tggagaggggaggtctTATACCAAGTAGCATGCCAAGTACTCTTCGTTCA
ATGATTTACGGATATGGAACTGCACAAGTCCTACATATGATACCATGTGT
CCAAACTTTTGTGTCATTATCCACCTTCATCTCTCCCATTTCAGTGCACT
GGTGGCAACATTCGGTTTATTACCTTCAACCCGCTGCACGCGCTGCAACT
GTAACGAAGGAGATAACTCGCTACTCAGATAGATATAGAGGAACTCTTGA
AAACGATGGAAGCAGAGGgccggaggcagagaaggacgGCGTGAAACGAA
GTAGACGTGCGTCACTGTGGGAGGTCATCCACGTGCCGGAGCCCAAGGTC
CGTGTGCAAGGGCCCATGGGAATGGCGGTGACTTTATTCGGTCGCGTACT
TTGCGAGTGGCTAATGGTCACACAAGGAAGATTCTTTGCCGAGAGAGAAG
GACTTTGATGGAGCAtttctgtctccttcccgtcgccTAAGCCAAGGAAA
TCTCAGCCTGAACTTACTAGTGTCGCATATCTCTTGTTTATCCTGTCACT
TGTCTTACAGAGCGATAGTGCGGTCTACATTCCATTTGAGCTCTACCCTC
GTGCAAAATCCTCAATCCCCCgcagaagggagaaagcatTGACAAAAACT
GGCTTTCGAAATAGAGGCAAGGGGGccgcggcgacggcgaccATGGCAAA
AGTACGTGTCTGGGAAAGGGACTAACAAATTACCATTCACATATTTGATT
CAAACTTATTTTATTTGTCTGCCATAATCCATAGGAGCCTAGGTGCCGGG
TGAtattggaggacgaggaagaagaagcagtaggggaaggagaggaggaa
gaagaagtaaGTGGTACGAAGAAATGGAAGCGAAAGCTCACTCAAGATGA
GCTCGGTGAAAAGGACCCTGTCTCTGGCAACAATCTGaggagcaagaaaa
gggacgaagacgaagaagatgaggaggaggaggaggaggagggtttggtc
gaggaggaagaggaggaggaggttgacgaggatgatgacTATGCCATGAA
TCACTACGCGAGCGATGGCTACGACGGGATGGATGACGGCgacgaaggag
gtggtgacaACGAGGCAATCTTTTAAAAGAAATTTGAGATGATCACGTGC
ATGTAGAAGATGGCGGAAAGAAAAATTGAGGCGCATTTCCCTCATTGATA
AGTGATTCTTCCTTTGCATGATTTGAGTGTCGTTCCA
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Coding sequence (CDS) from alignment at CM002459.1:7326..8912+

>rna2281 ID=rna2281|Name=rna2281|organism=Nannochloropsis gaditana|type=CDS|length=1836bp|location=Sequence derived from alignment at CM002459.1:7326..8912+ (Nannochloropsis gaditana)
AtgatggggcgggggcggggccgcggTGGACGttttggaggacggggcgg
agtGCCCGGCGGTGGAGGTCTCACAGCGCTCGACCATCTGCGAGACACAg
cagaggagatggggcTAGATCCTCGCGCCGCTTCCGGCTCTACGCAACAG
GAACCGCTGCCTTCCTACCCATATATTCCTATATATCCGCCCAGGCCGTT
GacggaggatgagggaataAAAATTCAGGCGCAAAGAGAGTTAGTGCACT
GGTGGCAACATTCGGTTTATTACCTTCAACCCGCTGCACGCGCTGCAACT
GTAACGAAGGAGATAACTCGCTACTCAGATAGATATAGAGGAACTCTTGA
AAACGATGGAAGCAGAGGgccggaggcagagaaggacgGCGTGAAACGAA
GTAGACGTGCGTCACTGTGGGAGGTCATCCACGTGCCGGAGCCCAAGAGC
GATAGTGCGGTCTACATTCCATTTGAGCTCTACCCTCGTGCAAAATCCTC
AATCCCCCgcagaagggagaaagcatTGACAAAAACTGGCTTTCGAAATA
GAGGCAAGGGGGccgcggcgacggcgaccATGGCAAAAGTACGTGTCTGG
GAAAGGGACTAAAtgatggggcgggggcggggccgcggTGGACGttttgg
aggacggggcggagtGCCCGGCGGTGGAGGTCTCACAGCGCTCGACCATC
TGCGAGACACAgcagaggagatggggcTAGATCCTCGCGCCGCTTCCGGC
TCTACGCAACAGGAACCGCTGCCTTCCTACCCATATATTCCTATATATCC
GCCCAGGCCGTTGacggaggatgagggaataAAAATTCAGGCGCAAAGAG
AGTTAGTGCACTGGTGGCAACATTCGGTTTATTACCTTCAACCCGCTGCA
CGCGCTGCAACTGTAACGAAGGAGATAACTCGCTACTCAGATAGATATAG
AGGAACTCTTGAAAACGATGGAAGCAGAGGgccggaggcagagaaggacg
GCGTGAAACGAAGTAGACGTGCGTCACTGTGGGAGGTCATCCACGTGCCG
GAGCCCAAGAGCGATAGTGCGGTCTACATTCCATTTGAGCTCTACCCTCG
TGCAAAATCCTCAATCCCCCgcagaagggagaaagcatTGACAAAAACTG
GCTTTCGAAATAGAGGCAAGGGGGccgcggcgacggcgaccATGGCAAAA
GTACGTGTCTGGGAAAGGGACTAAAtgatggggcgggggcggggccgcgg
TGGACGttttggaggacggggcggagtGCCCGGCGGTGGAGGTCTCACAG
CGCTCGACCATCTGCGAGACACAgcagaggagatggggcTAGATCCTCGC
GCCGCTTCCGGCTCTACGCAACAGGAACCGCTGCCTTCCTACCCATATAT
TCCTATATATCCGCCCAGGCCGTTGacggaggatgagggaataAAAATTC
AGGCGCAAAGAGAGTTAGTGCACTGGTGGCAACATTCGGTTTATTACCTT
CAACCCGCTGCACGCGCTGCAACTGTAACGAAGGAGATAACTCGCTACTC
AGATAGATATAGAGGAACTCTTGAAAACGATGGAAGCAGAGGgccggagg
cagagaaggacgGCGTGAAACGAAGTAGACGTGCGTCACTGTGGGAGGTC
ATCCACGTGCCGGAGCCCAAGAGCGATAGTGCGGTCTACATTCCATTTGA
GCTCTACCCTCGTGCAAAATCCTCAATCCCCCgcagaagggagaaagcat
TGACAAAAACTGGCTTTCGAAATAGAGGCAAGGGGGccgcggcgacggcg
accATGGCAAAAGTACGTGTCTGGGAAAGGGACTAA
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Synonyms
Publications