EWM28402.1, cds2273 (CDS) Nannochloropsis gaditana

Overview
NameEWM28402.1
Unique Namecds2273
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:7414..7657 +
Alignment locationCM002459.1:7820..8022 +
Alignment locationCM002459.1:8236..8400 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28402.1
ProductDNA-directed RNA polymerase III, subunit Rpc31
Orig transcript idgnl|cribi|Naga_100206g5.1434.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:7414..7657 +
CM002459.1supercontigCM002459.1:7820..8022 +
CM002459.1supercontigCM002459.1:8236..8400 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006359regulation of transcription by RNA polymerase III
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR024661RNA_pol_III_Rpc31
Homology
[Close]
BLAST of EWM28402.1 vs. NCBI_GenBank
Match: gi|585110786|gb|EWM28402.1| (DNA-directed RNA polymerase III, subunit Rpc31 [Nannochloropsis gaditana])

HSP 1 Score: 410.223 bits (1053), Expect = 6.693e-145
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0 
Query:    1 MMGRGRGRGGRFGGRGGVPGGGGLTALDHLRDTAEEMGLDPRAASGSTQQEPLPSYPYIPIYPPRPLTEDEGIKIQAQRELVHWWQHSVYYLQPAARAATVTKEITRYSDRYRGTLENDGSRGPEAEKDGVKRSRRASLWEVIHVPEPKSDSAVYIPFELYPRAKSSIPRRREKALTKTGFRNRGKGAAATATMAKVRVWERD 203
            MMGRGRGRGGRFGGRGGVPGGGGLTALDHLRDTAEEMGLDPRAASGSTQQEPLPSYPYIPIYPPRPLTEDEGIKIQAQRELVHWWQHSVYYLQPAARAATVTKEITRYSDRYRGTLENDGSRGPEAEKDGVKRSRRASLWEVIHVPEPKSDSAVYIPFELYPRAKSSIPRRREKALTKTGFRNRGKGAAATATMAKVRVWERD
Sbjct:    1 MMGRGRGRGGRFGGRGGVPGGGGLTALDHLRDTAEEMGLDPRAASGSTQQEPLPSYPYIPIYPPRPLTEDEGIKIQAQRELVHWWQHSVYYLQPAARAATVTKEITRYSDRYRGTLENDGSRGPEAEKDGVKRSRRASLWEVIHVPEPKSDSAVYIPFELYPRAKSSIPRRREKALTKTGFRNRGKGAAATATMAKVRVWERD 203
[Close]
BLAST of EWM28402.1 vs. NCBI_GenBank
Match: gi|585110787|gb|EWM28403.1| (DNA-directed RNA polymerase III, subunit Rpc31 [Nannochloropsis gaditana])

HSP 1 Score: 304.294 bits (778), Expect = 3.089e-103
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 
Query:    1 MMGRGRGRGGRFGGRGGVPGGGGLTALDHLRDTAEEMGLDPRAASGSTQQEPLPSYPYIPIYPPRPLTEDEGIKIQAQRELVHWWQHSVYYLQPAARAATVTKEITRYSDRYRGTLENDGSRGPEAEKDGVKRSRRASLWEVIHVPEPK 149
            MMGRGRGRGGRFGGRGGVPGGGGLTALDHLRDTAEEMGLDPRAASGSTQQEPLPSYPYIPIYPPRPLTEDEGIKIQAQRELVHWWQHSVYYLQPAARAATVTKEITRYSDRYRGTLENDGSRGPEAEKDGVKRSRRASLWEVIHVPEPK
Sbjct:    1 MMGRGRGRGGRFGGRGGVPGGGGLTALDHLRDTAEEMGLDPRAASGSTQQEPLPSYPYIPIYPPRPLTEDEGIKIQAQRELVHWWQHSVYYLQPAARAATVTKEITRYSDRYRGTLENDGSRGPEAEKDGVKRSRRASLWEVIHVPEPK 149
The following BLAST results are available for this feature:
BLAST of EWM28402.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110786|gb|EWM28402.1|6.693e-145100.00DNA-directed RNA polymerase III, subunit Rpc31 [Na... [more]
gi|585110787|gb|EWM28403.1|3.089e-103100.00DNA-directed RNA polymerase III, subunit Rpc31 [Na... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2281rna2281Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications