rna228, rna228 (mRNA) Nannochloropsis gaditana

Overview
Namerna228
Unique Namerna228
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1819
Alignment locationCM002455.1:577720..579114 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100100g12.8922.mrna
Orig protein idgnl|cribi|Naga_100100g12.8922
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:577720..579114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100100g12gene217Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna228rna228-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30454.1cds228Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna228 ID=rna228|Name=rna228|organism=Nannochloropsis gaditana|type=mRNA|length=1819bp
CCAACACTCTCCAGCTCCTTCCGCTCCCTCCCACGCTTCACTAAGAACTC
GTCGGTTCATGGCACGTATGAGGGAATCGACATGCATTACCACTTAATTG
TCGTCAAGTATAGAGTTTTTGGAAGGGGGGGGGTCCCAGAAAGTGATTAA
GCAGATGGAGCTCGCTACCCTAGCGTAGGAAGTTCTCCCGTGGAGAGACT
ACAAAGAAGCTCTCATGATGACGCTGGGCTCGCTTTTAGGCCCCTGCGAC
GACGAATCATAAAGCCTGTGATGCCCTGGAATTCATGGCTCTCTGTACTT
TGGTTGTGGAGCCACACCTTGTGATATTGCTCGCAACGTGAATTGCTCCG
TTAGGTATCGTTACAAGCAGATGCTGTTAGCGAGGACCTAGAACCCTTCA
GTGGATGGAATCGAAATGGGAGACCATGATGCCCCGTCACGGACTCATTT
TCTTTACAATGCGGCTCATCTACTCGTTGAGAAGCTCCTGCTGACATAAA
GGCGCATTACTCATATGACCCTCCACATTTTGTAGGGTGTTTGAGCACGC
ACAACGCAAGCAGGCGCGGGAGCACCATCGGAGGGGACATGACGGATTTC
ATTCCCGAATTCAAATTGATTCTCGTCGGTGACGGTGGCGTAGGGAAAAC
CACTTTTGTACGACGACACTTAACAGGGGAGTTTGAAAAGCGATATGTGG
CGACTCTAGGGGTTGAAGTCCACCCGCTCTTGTTCCACACAAACCGTGGC
CAGATCAAATTTAATGTTTGGGACACAGCCGGTCAGGAGAAATTTGGTGG
ACTCCGAGACGGTTACTATATCCAGGGACAATGCGCGATTATCATGTTCG
ACGTGACATCCCGTATCACCTACAAGAACGTTCCAAACTGGCACCGAGAT
CTGACCCGTGTCTGTGAGAACATTCCCATCGTTCTCTGCGGGAACAAAGT
GGAGATCAAGGATCGAAAAGTCAAACCCAAGCAGATCATTTTCCACCGAA
AGAAGAACTTGCAGTACTATGATATCTCAGCCAAGAGCAATTACAATTTC
GAGAAGCCCTTCCTGTGGCTGGCGCGAAAGCTGACTGGTGATAACAATTT
GCACTTTGTCGAGGCACCGGCCTTGGCGCCGCCTGAGGTTGCCTACGATC
AGAACGACATGGTTCGCTACGAGCAAGAACTCACAGAAGCTGCCGCCATG
CCCTTACCCGATGAGGACGACGACCTGTAAAGCAAGAACGGTGACAGAAA
AGCTCAAGAAATGTAGCGGTCACAATGCAAATGCGGGCTGATCAGATGGT
GGGAAAGCACCTGTACGGGTCGCGTATGGCCATCTCCAGGCTCGAAGTGG
TTGGTTCTTGACCGGGGTCTGGGTGTAGATGAAAGAAGCGAGAAGTTGCG
GAAAGAAATAGGAGTAGGAAATTCTCAGCATTCTTTTGCTGTCATGAAAG
CGTATGCAATGGTAGCAGGTATACTGCGTAGGGCTAAGACCCGATCGAGC
GTTTGGTGAAGCCACAACTAGTACTACTACTGACGCGAAGCGAGCCCGCA
AATGAAGCAACGAGATTCAATTAAAGCATCTTTCTCTTTTACAAGTTTCG
ATACATTTATTCTAAAACAATTATTTTGGTACGCATTTGTGAGGTGTGAT
GTGTAATGGAAGTATAACAGGTTTAACGGGCTCATGATTGTAGCTGCTAC
CAGTTCCGCATACTTGGCGGCGTCTTAGAAGCTCTTAGGCATACAGAAAC
ATGTGAATTCATATCAAATCTAAATTTGTACTGTTTTCCTTACTTCGATT
GTACCTTCGCATGTCCAAA
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protein sequence of rna228

>rna228-protein ID=rna228-protein|Name=rna228|organism=Nannochloropsis gaditana|type=polypeptide|length=236bp
MRVAVTLFATAIVLSAPVSRAFISSNVTNSNDLAAGQKICKPRVLKNFLK
CAYVQKGDSATWPDLSSCESVLGDCRGWVYHGVNVDELVGRSYLSAAGVS
RKANFLGYYAYGDEDPKKYTRFDCNYVSKLYQDVGHCVLGQTTVQGSLTF
EDVVDECIESSLSPVQSAFLWAQTEFLRSAPLDFGKITYFYIIPQLLMGD
GLSSESCPVLEGYLKSQTTLVRRRKGSAIPIVPFLE
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mRNA from alignment at CM002455.1:577720..579114-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna228 ID=rna228|Name=rna228|organism=Nannochloropsis gaditana|type=mRNA|length=1395bp|location=Sequence derived from alignment at CM002455.1:577720..579114- (Nannochloropsis gaditana)
TCCAGACAGCAATCAAACAACATCCCACTGACATCATGAGGGTTGCAGTC
ACCCTGTTTGCAACAGCGATTGTGTTATCGGCTCCTGTGTCTCGAGCCTT
CATCTCGTCCAACGTGACAAATTCGAACGATTTAGCTGCCGGCCAGAAAA
TCTGCAAGCCCAGGGTTTTGAAGAACTTTTTGAAGTGTGCGTACGTCCAA
AAGGGGGACTCAGCCACATGGCCCGATCTCTCTTCTTGCGAATCCGTATT
GGGGGACTGTCGTGGGTGGGTATACCACGGCGTAAATGTTGACGAGTTAG
TCGGCAGGTCCTACCTCAGTGCCGCGGGTGTCTCCAGGAAAGCGAACTTT
CTCGGTTACTACGCATATGGGGATGAAGATCCCAAAAAATGTAAGCTATC
ATCGCTCAGACCTCATCAATTCACAAATTTCCCTCAATTCAGCGTAGTTC
TCAAAGTACTGACAAATTGCCTTTTTCAAACCAGACACTCGATTTGACTG
TAACTACGTTTCCAAGCTCTACCAAGATGTACGTGCTAAATTGAAGTCGC
GATGTGATGTTGGTATTATGACTAGTTAAAGAATTGGCTTGGAGAAATTC
TTACTACATGACCGCCGTCATACTCCTGTGCCTCTCAGACGTCTCATCTT
CTATCAACAAATGCTTTGACAATCAAAATTTCAGGTTGGACATTGTGTAC
TGGGTCAGACAACTGTCCAAGGTAGCCTTACCTTTGAAGACGTGGTAGAC
GAATGTATCGAGTCTTCCTTAAGTCCTGTGCAATCCGCGTTTTTGTGGGC
TCAAACCGAATTTCTTCGCAGTGCCCCGTTGGATTTCGGAAAAATTACGT
ACTTCTACATCATCCCACAATTACTGATGGGTGACGGACTTTCGAGTGAG
AGCTGTCCCGTTCTGGAAGGTTACTTGAAGAGCCAAACGACGTTGGTCCG
CCGACGAAAGGGTTCGGCGATTCCCATCGTCCCATTCCTTGAATAGGAAC
GCGGCGAGGCTTATAACTTCTCAACTTATTGAGATTGAAGATTTAGACGG
ATTGGTTGTTGTGTTAAGGGAGGGAAACCATAGCAAATTGTTTTTCGAGA
AGTGCTTTTTTTCTGGGGCAAATGGTGTACGATGCCACGCACATACGCCT
GCATCATGGTAGGCCATACCCAGCTTTGTCTCCCACTGAATTCGGATACG
ATGTCAGCAATGATGGAGCAGAAACAACATTTTCGGAGAAGTCGTCGATG
TTATTTTCTTTCCACTTTCCTACCATTTTTACATGGGCCTGGACACAATT
GTGTACTTTTTGTCAGCAGTATAAGCTATACTCAGCCGCCTGATAAGAAA
GTGCTGAGTGCAAGATGCCATAAAAATATCACGCTCCTACTGCTC
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Coding sequence (CDS) from alignment at CM002455.1:577720..579114-

>rna228 ID=rna228|Name=rna228|organism=Nannochloropsis gaditana|type=CDS|length=2133bp|location=Sequence derived from alignment at CM002455.1:577720..579114- (Nannochloropsis gaditana)
GTTGGACATTGTGTACTGGGTCAGACAACTGTCCAAGGTAGCCTTACCTT
TGAAGACGTGGTAGACGAATGTATCGAGTCTTCCTTAAGTCCTGTGCAAT
CCGCGTTTTTGTGGGCTCAAACCGAATTTCTTCGCAGTGCCCCGTTGGAT
TTCGGAAAAATTACGTACTTCTACATCATCCCACAATTACTGATGGGTGA
CGGACTTTCGAGTGAGAGCTGTCCCGTTCTGGAAGGTTACTTGAAGAGCC
AAACGACGTTGGTCCGCCGACGAAAGGGTTCGGCGATTCCCATCGTCCCA
TTCCTTGAATAGACACTCGATTTGACTGTAACTACGTTTCCAAGCTCTAC
CAAGATATGAGGGTTGCAGTCACCCTGTTTGCAACAGCGATTGTGTTATC
GGCTCCTGTGTCTCGAGCCTTCATCTCGTCCAACGTGACAAATTCGAACG
ATTTAGCTGCCGGCCAGAAAATCTGCAAGCCCAGGGTTTTGAAGAACTTT
TTGAAGTGTGCGTACGTCCAAAAGGGGGACTCAGCCACATGGCCCGATCT
CTCTTCTTGCGAATCCGTATTGGGGGACTGTCGTGGGTGGGTATACCACG
GCGTAAATGTTGACGAGTTAGTCGGCAGGTCCTACCTCAGTGCCGCGGGT
GTCTCCAGGAAAGCGAACTTTCTCGGTTACTACGCATATGGGGATGAAGA
TCCCAAAAAATGTTGGACATTGTGTACTGGGTCAGACAACTGTCCAAGGT
AGCCTTACCTTTGAAGACGTGGTAGACGAATGTATCGAGTCTTCCTTAAG
TCCTGTGCAATCCGCGTTTTTGTGGGCTCAAACCGAATTTCTTCGCAGTG
CCCCGTTGGATTTCGGAAAAATTACGTACTTCTACATCATCCCACAATTA
CTGATGGGTGACGGACTTTCGAGTGAGAGCTGTCCCGTTCTGGAAGGTTA
CTTGAAGAGCCAAACGACGTTGGTCCGCCGACGAAAGGGTTCGGCGATTC
CCATCGTCCCATTCCTTGAATAGACACTCGATTTGACTGTAACTACGTTT
CCAAGCTCTACCAAGATATGAGGGTTGCAGTCACCCTGTTTGCAACAGCG
ATTGTGTTATCGGCTCCTGTGTCTCGAGCCTTCATCTCGTCCAACGTGAC
AAATTCGAACGATTTAGCTGCCGGCCAGAAAATCTGCAAGCCCAGGGTTT
TGAAGAACTTTTTGAAGTGTGCGTACGTCCAAAAGGGGGACTCAGCCACA
TGGCCCGATCTCTCTTCTTGCGAATCCGTATTGGGGGACTGTCGTGGGTG
GGTATACCACGGCGTAAATGTTGACGAGTTAGTCGGCAGGTCCTACCTCA
GTGCCGCGGGTGTCTCCAGGAAAGCGAACTTTCTCGGTTACTACGCATAT
GGGGATGAAGATCCCAAAAAATGTTGGACATTGTGTACTGGGTCAGACAA
CTGTCCAAGGTAGCCTTACCTTTGAAGACGTGGTAGACGAATGTATCGAG
TCTTCCTTAAGTCCTGTGCAATCCGCGTTTTTGTGGGCTCAAACCGAATT
TCTTCGCAGTGCCCCGTTGGATTTCGGAAAAATTACGTACTTCTACATCA
TCCCACAATTACTGATGGGTGACGGACTTTCGAGTGAGAGCTGTCCCGTT
CTGGAAGGTTACTTGAAGAGCCAAACGACGTTGGTCCGCCGACGAAAGGG
TTCGGCGATTCCCATCGTCCCATTCCTTGAATAGACACTCGATTTGACTG
TAACTACGTTTCCAAGCTCTACCAAGATATGAGGGTTGCAGTCACCCTGT
TTGCAACAGCGATTGTGTTATCGGCTCCTGTGTCTCGAGCCTTCATCTCG
TCCAACGTGACAAATTCGAACGATTTAGCTGCCGGCCAGAAAATCTGCAA
GCCCAGGGTTTTGAAGAACTTTTTGAAGTGTGCGTACGTCCAAAAGGGGG
ACTCAGCCACATGGCCCGATCTCTCTTCTTGCGAATCCGTATTGGGGGAC
TGTCGTGGGTGGGTATACCACGGCGTAAATGTTGACGAGTTAGTCGGCAG
GTCCTACCTCAGTGCCGCGGGTGTCTCCAGGAAAGCGAACTTTCTCGGTT
ACTACGCATATGGGGATGAAGATCCCAAAAAAT
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Synonyms
Publications