EWM30454.1, cds228 (CDS) Nannochloropsis gaditana

Overview
NameEWM30454.1
Unique Namecds228
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:578725..579079 -
Alignment locationCM002455.1:578587..578630 -
Alignment locationCM002455.1:578119..578430 -

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Properties
Property NameValue
Protein idEWM30454.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100100g12.8922.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:578725..579079 -
CM002455.1supercontigCM002455.1:578587..578630 -
CM002455.1supercontigCM002455.1:578119..578430 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM30454.1 vs. NCBI_GenBank
Match: gi|585113117|gb|EWM30454.1| (hypothetical protein Naga_100100g12 [Nannochloropsis gaditana])

HSP 1 Score: 487.649 bits (1254), Expect = 2.317e-174
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query:    1 MRVAVTLFATAIVLSAPVSRAFISSNVTNSNDLAAGQKICKPRVLKNFLKCAYVQKGDSATWPDLSSCESVLGDCRGWVYHGVNVDELVGRSYLSAAGVSRKANFLGYYAYGDEDPKKYTRFDCNYVSKLYQDVGHCVLGQTTVQGSLTFEDVVDECIESSLSPVQSAFLWAQTEFLRSAPLDFGKITYFYIIPQLLMGDGLSSESCPVLEGYLKSQTTLVRRRKGSAIPIVPFLE 236
            MRVAVTLFATAIVLSAPVSRAFISSNVTNSNDLAAGQKICKPRVLKNFLKCAYVQKGDSATWPDLSSCESVLGDCRGWVYHGVNVDELVGRSYLSAAGVSRKANFLGYYAYGDEDPKKYTRFDCNYVSKLYQDVGHCVLGQTTVQGSLTFEDVVDECIESSLSPVQSAFLWAQTEFLRSAPLDFGKITYFYIIPQLLMGDGLSSESCPVLEGYLKSQTTLVRRRKGSAIPIVPFLE
Sbjct:    1 MRVAVTLFATAIVLSAPVSRAFISSNVTNSNDLAAGQKICKPRVLKNFLKCAYVQKGDSATWPDLSSCESVLGDCRGWVYHGVNVDELVGRSYLSAAGVSRKANFLGYYAYGDEDPKKYTRFDCNYVSKLYQDVGHCVLGQTTVQGSLTFEDVVDECIESSLSPVQSAFLWAQTEFLRSAPLDFGKITYFYIIPQLLMGDGLSSESCPVLEGYLKSQTTLVRRRKGSAIPIVPFLE 236          
BLAST of EWM30454.1 vs. NCBI_GenBank
Match: gi|585101277|gb|EWM21193.1| (hypothetical protein Naga_100474g4 [Nannochloropsis gaditana])

HSP 1 Score: 249.98 bits (637), Expect = 2.250e-80
Identity = 109/212 (51.42%), Postives = 155/212 (73.11%), Query Frame = 0
Query:   21 AFISSNVTNSNDLAAGQKICKPRVLKNFLKCAYVQKGDSATWPDLSSCESVLGDCRGWVYHGVNVDELVGRS--YLSAAGVSRKANFLGYYAYGDEDPKKYTRFDCNYVSKLYQDVGHCVLGQTTVQGSLTFEDVVDECIESSLSPVQSAFLWAQTEFLRSAPLDFGKITYFYIIPQLLMGDGLSSESCPVLEGYLKSQTTLVRRRKGSAIP 230
            AF+SS+V  +NDL   +++CK R  KNFLKCA+ +KG+++TWPDLSSC+S+LGDCRGW Y GVN   + G +  YL  AG+S+ A + GYYAYG+ DPKKY  FDCNYVS+LY+ VG C+LGQ+TV G++ F D+V +C+E +LS  ++AF+++QT F    P+  G + YFY+ P L + D ++ E+CP+LEG+ K  + +VR  KG A+P
Sbjct:   25 AFVSSDVYANNDLTGDERVCKNRQFKNFLKCAHAEKGNASTWPDLSSCQSLLGDCRGWAYDGVNDGAITGNTEAYLGIAGISKNARYFGYYAYGNADPKKYVPFDCNYVSRLYKKVGRCILGQSTVVGTIDFTDLVTDCVEITLSRAEAAFVFSQTNFAFGMPVPVGVVKYFYMAPFLRLSDDINYENCPILEGHFKKGSPIVRASKGGAVP 236          
BLAST of EWM30454.1 vs. NCBI_GenBank
Match: gi|585109819|gb|EWM27552.1| (hypothetical protein Naga_100015g58 [Nannochloropsis gaditana])

HSP 1 Score: 230.72 bits (587), Expect = 6.756e-73
Identity = 114/217 (52.53%), Postives = 147/217 (67.74%), Query Frame = 0
Query:    3 VAVTLFATAIVLSAPVSRAFISSNVTNSNDLAAGQKICKPRVLKNFLKCAYVQKGDSATWPDLSSCESVLGDCRGWVYHGVNVDELVGRS--YLSAAGVSRKANFLGYYAYGDEDPKKYTRFDCNYVSKLYQDVGHCVLGQTTV--QGSLTFEDVVDECIESSLSPVQSAFLWAQTEFLRSAPLDFGKITYFYIIPQLLMGDGLSSESCPVLEGYLK 215
            VAVTL A     SA        SNV+++N LAAGQK+C  R LK+FL CAY +KG ++ WP LS CE  LG CRGW Y G++   +      +L  AG+S+ A + GYYAYGD DPKKY  F+CNYVSKL+Q VG C+LG+TT   QGSL FE VV ECI S L P + +F++ QT++ RSAP++ G +TYFYI P LL+ +  ++E CPV+EGY K
Sbjct:    9 VAVTLVALPWATSA--------SNVSDANPLAAGQKVCSKRQLKSFLGCAYAEKGSASIWPSLSPCEGQLGKCRGWAYDGLDAQIVTNEDEPFLGVAGLSKNARYFGYYAYGDLDPKKYVPFNCNYVSKLFQKVGRCILGKTTTASQGSLFFERVVVECIRSVLDPAEQSFVFTQTDYTRSAPMEPGLVTYFYISPFLLLANKEATEDCPVVEGYFK 217          
BLAST of EWM30454.1 vs. NCBI_GenBank
Match: gi|553188521|ref|XP_005854813.1| (hypothetical protein NGA_0414800 [Nannochloropsis gaditana CCMP526] >gi|422294249|gb|EKU21549.1| hypothetical protein NGA_0414800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 205.682 bits (522), Expect = 5.805e-63
Identity = 95/212 (44.81%), Postives = 136/212 (64.15%), Query Frame = 0
Query:   21 AFISSNVTNSNDLAAGQKICKPRVLKNFLKCAYVQKGDSATWPDLSSCESVLGDCRGWVYHGVNVDELVGRS--YLSAAGVSRKANFLGYYAYGDEDPKKYTRFDCNYVSKLYQDVGHCVLGQTTVQGSLTFEDVVDECIESSLSPVQSAFLWAQTEFLRSAPLDFGKITYFYIIPQLLMGDGLSSESCPVLEGYLKSQTTLVRRRKGSAIP 230
            AF+SS+V  +NDL   +++CK R  KNFLKCA+ +KG+++TWPDLSSC+S+LGDCRGW Y GVN   + G +  YL  AG+S+ A + GYYAYG+ DPKKY  FDCNYVS+LY+ +                          +LS  ++AF+++QT F    P+  G + YFY++P L + D ++ E+CP+LEG+ K  + +VR  KG A+P
Sbjct:   25 AFVSSDVYANNDLTGDERVCKNRQFKNFLKCAHAEKGNASTWPDLSSCQSLLGDCRGWAYDGVNDGAITGNTEAYLGIAGISKNARYFGYYAYGNADPKKYVPFDCNYVSRLYKKI--------------------------TLSRAEAAFVFSQTNFAFGMPVPVGVVKYFYMVPFLRLSDDINYENCPILEGHFKKGSPIVRASKGGAVP 210          
The following BLAST results are available for this feature:
BLAST of EWM30454.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585113117|gb|EWM30454.1|2.317e-174100.00hypothetical protein Naga_100100g12 [Nannochlorops... [more]
gi|585101277|gb|EWM21193.1|2.250e-8051.42hypothetical protein Naga_100474g4 [Nannochloropsi... [more]
gi|585109819|gb|EWM27552.1|6.756e-7352.53hypothetical protein Naga_100015g58 [Nannochlorops... [more]
gi|553188521|ref|XP_005854813.1|5.805e-6344.81hypothetical protein NGA_0414800 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna228rna228Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications