EWM30454.1, cds228 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM30454.1 vs. NCBI_GenBank
Match: gi|585113117|gb|EWM30454.1| (hypothetical protein Naga_100100g12 [Nannochloropsis gaditana]) HSP 1 Score: 487.649 bits (1254), Expect = 2.317e-174 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query: 1 MRVAVTLFATAIVLSAPVSRAFISSNVTNSNDLAAGQKICKPRVLKNFLKCAYVQKGDSATWPDLSSCESVLGDCRGWVYHGVNVDELVGRSYLSAAGVSRKANFLGYYAYGDEDPKKYTRFDCNYVSKLYQDVGHCVLGQTTVQGSLTFEDVVDECIESSLSPVQSAFLWAQTEFLRSAPLDFGKITYFYIIPQLLMGDGLSSESCPVLEGYLKSQTTLVRRRKGSAIPIVPFLE 236
MRVAVTLFATAIVLSAPVSRAFISSNVTNSNDLAAGQKICKPRVLKNFLKCAYVQKGDSATWPDLSSCESVLGDCRGWVYHGVNVDELVGRSYLSAAGVSRKANFLGYYAYGDEDPKKYTRFDCNYVSKLYQDVGHCVLGQTTVQGSLTFEDVVDECIESSLSPVQSAFLWAQTEFLRSAPLDFGKITYFYIIPQLLMGDGLSSESCPVLEGYLKSQTTLVRRRKGSAIPIVPFLE
Sbjct: 1 MRVAVTLFATAIVLSAPVSRAFISSNVTNSNDLAAGQKICKPRVLKNFLKCAYVQKGDSATWPDLSSCESVLGDCRGWVYHGVNVDELVGRSYLSAAGVSRKANFLGYYAYGDEDPKKYTRFDCNYVSKLYQDVGHCVLGQTTVQGSLTFEDVVDECIESSLSPVQSAFLWAQTEFLRSAPLDFGKITYFYIIPQLLMGDGLSSESCPVLEGYLKSQTTLVRRRKGSAIPIVPFLE 236
BLAST of EWM30454.1 vs. NCBI_GenBank
Match: gi|585101277|gb|EWM21193.1| (hypothetical protein Naga_100474g4 [Nannochloropsis gaditana]) HSP 1 Score: 249.98 bits (637), Expect = 2.250e-80 Identity = 109/212 (51.42%), Postives = 155/212 (73.11%), Query Frame = 0
Query: 21 AFISSNVTNSNDLAAGQKICKPRVLKNFLKCAYVQKGDSATWPDLSSCESVLGDCRGWVYHGVNVDELVGRS--YLSAAGVSRKANFLGYYAYGDEDPKKYTRFDCNYVSKLYQDVGHCVLGQTTVQGSLTFEDVVDECIESSLSPVQSAFLWAQTEFLRSAPLDFGKITYFYIIPQLLMGDGLSSESCPVLEGYLKSQTTLVRRRKGSAIP 230
AF+SS+V +NDL +++CK R KNFLKCA+ +KG+++TWPDLSSC+S+LGDCRGW Y GVN + G + YL AG+S+ A + GYYAYG+ DPKKY FDCNYVS+LY+ VG C+LGQ+TV G++ F D+V +C+E +LS ++AF+++QT F P+ G + YFY+ P L + D ++ E+CP+LEG+ K + +VR KG A+P
Sbjct: 25 AFVSSDVYANNDLTGDERVCKNRQFKNFLKCAHAEKGNASTWPDLSSCQSLLGDCRGWAYDGVNDGAITGNTEAYLGIAGISKNARYFGYYAYGNADPKKYVPFDCNYVSRLYKKVGRCILGQSTVVGTIDFTDLVTDCVEITLSRAEAAFVFSQTNFAFGMPVPVGVVKYFYMAPFLRLSDDINYENCPILEGHFKKGSPIVRASKGGAVP 236
BLAST of EWM30454.1 vs. NCBI_GenBank
Match: gi|585109819|gb|EWM27552.1| (hypothetical protein Naga_100015g58 [Nannochloropsis gaditana]) HSP 1 Score: 230.72 bits (587), Expect = 6.756e-73 Identity = 114/217 (52.53%), Postives = 147/217 (67.74%), Query Frame = 0
Query: 3 VAVTLFATAIVLSAPVSRAFISSNVTNSNDLAAGQKICKPRVLKNFLKCAYVQKGDSATWPDLSSCESVLGDCRGWVYHGVNVDELVGRS--YLSAAGVSRKANFLGYYAYGDEDPKKYTRFDCNYVSKLYQDVGHCVLGQTTV--QGSLTFEDVVDECIESSLSPVQSAFLWAQTEFLRSAPLDFGKITYFYIIPQLLMGDGLSSESCPVLEGYLK 215
VAVTL A SA SNV+++N LAAGQK+C R LK+FL CAY +KG ++ WP LS CE LG CRGW Y G++ + +L AG+S+ A + GYYAYGD DPKKY F+CNYVSKL+Q VG C+LG+TT QGSL FE VV ECI S L P + +F++ QT++ RSAP++ G +TYFYI P LL+ + ++E CPV+EGY K
Sbjct: 9 VAVTLVALPWATSA--------SNVSDANPLAAGQKVCSKRQLKSFLGCAYAEKGSASIWPSLSPCEGQLGKCRGWAYDGLDAQIVTNEDEPFLGVAGLSKNARYFGYYAYGDLDPKKYVPFNCNYVSKLFQKVGRCILGKTTTASQGSLFFERVVVECIRSVLDPAEQSFVFTQTDYTRSAPMEPGLVTYFYISPFLLLANKEATEDCPVVEGYFK 217
BLAST of EWM30454.1 vs. NCBI_GenBank
Match: gi|553188521|ref|XP_005854813.1| (hypothetical protein NGA_0414800 [Nannochloropsis gaditana CCMP526] >gi|422294249|gb|EKU21549.1| hypothetical protein NGA_0414800 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 205.682 bits (522), Expect = 5.805e-63 Identity = 95/212 (44.81%), Postives = 136/212 (64.15%), Query Frame = 0
Query: 21 AFISSNVTNSNDLAAGQKICKPRVLKNFLKCAYVQKGDSATWPDLSSCESVLGDCRGWVYHGVNVDELVGRS--YLSAAGVSRKANFLGYYAYGDEDPKKYTRFDCNYVSKLYQDVGHCVLGQTTVQGSLTFEDVVDECIESSLSPVQSAFLWAQTEFLRSAPLDFGKITYFYIIPQLLMGDGLSSESCPVLEGYLKSQTTLVRRRKGSAIP 230
AF+SS+V +NDL +++CK R KNFLKCA+ +KG+++TWPDLSSC+S+LGDCRGW Y GVN + G + YL AG+S+ A + GYYAYG+ DPKKY FDCNYVS+LY+ + +LS ++AF+++QT F P+ G + YFY++P L + D ++ E+CP+LEG+ K + +VR KG A+P
Sbjct: 25 AFVSSDVYANNDLTGDERVCKNRQFKNFLKCAHAEKGNASTWPDLSSCQSLLGDCRGWAYDGVNDGAITGNTEAYLGIAGISKNARYFGYYAYGNADPKKYVPFDCNYVSRLYKKI--------------------------TLSRAEAAFVFSQTNFAFGMPVPVGVVKYFYMVPFLRLSDDINYENCPILEGHFKKGSPIVRASKGGAVP 210 The following BLAST results are available for this feature:
BLAST of EWM30454.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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