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Properties
| Property Name | Value |
|---|
| Product | ubiquitin carboxyl-terminal hydrolase 3 |
| Orig transcript id | gnl|cribi|Naga_100088g2.1225.mrna |
| Orig protein id | gnl|cribi|Naga_100088g2.1225 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002458.1 | supercontig | CM002458.1:1359259..1360817 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2275 ID=rna2275|Name=rna2275|organism=Nannochloropsis gaditana|type=mRNA|length=1981bp
ATGCCTTCACATATTAACGGGTACTCGATATCTCATCGCGTAATAAATCA
CATAGGCGAAAGCTCAGGAAAGCCAAGGCGCGGTCGACAATCTATTTCTA
CACTTGCTCCTTTGCTTCGCGCCCAAGACTGCCGCAATTCGTCTGGCCTT
GCAAAAAAGTGCCCCTGGCGGACTCAGCACAAAATATAATGCCTCGCCAG
TCCACCAACACTACCTCAATCTTCTCTGGAAAACACCATCTTGCAAGCTT
GCGTCGAGAACGCCCTGCGTCGAACAAGCCTTCTACCTCGGGGTCCCCAC
GTTACCACAATCTCCTCAGCCGCCTAGTGGACCTCGAAGCTGCGCTAGAG
GTTGCCGCCCGAGAGCGTGCATGGGAAGAGAGCAGCTATAGGTCCCTGAA
AGAAAAATATGCCTCGACAAAAGCCGCTCTTGCGGAGCTTAAGGCAGAGA
AAATGGAGCTGGAAAAGCAGTCTGAGGCCACGATGGCGAAATGGCGAGCA
CATCATGATCGACAAGTGAAGGAGCTTGCCATTTTCCAGGTGATACAAAT
ATTGGTTTAGAATCTGGTGCAACTTGATAAGTGTATCCCAGCGTGAAGAT
TTGGCGTGTCATGCCCCTCCGATTTCCCCCCTATTCCCTTCTACCCGCAC
ATCCTTCCCGAACGCAGCAACAAGCCGAAGAGCTTGCCAAGCTCTCCTCC
CTCCGCACGCAATGGGCTCAAGAGGCTGAAGACTTGAAGGCTGAATGCGA
GACATTCCGTTCTCTCTACGACTCAGCGCGTGCAGAGGCTGAAAAAAGCA
AGGAGGAGTTCATCGCCGTCGTGGAGGACCAGGCCCGGAGCCAGAAGGAA
ATGATTAATGCTGCCCGCTTAGAGGCTGAGCAGATGCAGGCGCGTGTCCG
AGAGCTTGAAGAGGAAGTAGATCAAGGTCGAAGCCGTGAGGAGGTCCGTC
GCCAGCTGGAAAGAGACCTGGACGTGGCGCATGCCGCCCTCCGCCAGAGC
CAGGCGGTGGTACAAGCCACCGAAGAAGCACGAGAGCGCGTGGAAGTGCA
GTCGCAGCGGGAAGGTGTCATTCATGAGGCGCAGCTGGCAGAGTGGATGG
CCAAGGCCGCAGCAGTGACGAGTGAGCGGAAGGGCCTGGAGGCACGCATC
GAGGGCTTGGAAAAGGAACTGGCTCAGGCGGTGGAAGAGCGGCGCGGGAA
AAGAGTAGAGCTGGAAGAGGCAGCAGAGGAAATTGGCCGGCTGCGAGAAG
CATTGGAGATATCAGAACGTGCAGTGGAGGAGGGGCGGAGGAAAGCAACG
CGGGAGGGGGAAGAGTTACGCCGGGCTTGGCGAGAGGAAAAATCTGAGTG
GGATGAGAAAATTGAAAGGCTAGAGCGGCAAGTGCAGAGAACAGAAACGG
AAATGAAGGAATTGAGACGAGAGAGGCTTGTGGCGGACGAGCGTCTCGCC
GCGAGTGAGGAAAACACTCGACACGGGGTCGGGGAGGAGGCACGGCGACT
GCAAGAGCGGGTAGCTGATTTGGAGGAAGCATTAGAGGAAGAGCGCGTGC
GAGGCATCAAAGTCGAGAACGACTGGAAATTTGTGGTCAGGGATCTGCAC
AGACAGCTTCGGGAACCGACACCACCTGAAAGGTGCCCGCATGCGGACTC
GATGGCGCCGGGCATAGGTGCAGAAGCAGAGGAGATGGCAGCGACTGCGC
GCGACCAGAGTTTACGGCGGGAGGAAAGGCAAGAGGAGGATCTACGGGCG
ATGACCTTATTGAGAGAAGAGTTGGAAAAGGTCAAATTGAGGAGCATGCT
GGCGATCCAAAAGGCAGAGCGGCGCGCCGATGCATACAAGAGCAAATGCC
TGGAGTTGCATGAGCGATGGAAGGAGGGCAGTGTGGTCGGAAGGTTGTAA
GAGGGCTGTAAATATGAAGAAGAGAGAAATCGTATAGATAAATGCTGGTT
AGATCAAGCAATACCAGGCGACACCAATTTC back to topprotein sequence of rna2275 >rna2275-protein ID=rna2275-protein|Name=rna2275|organism=Nannochloropsis gaditana|type=polypeptide|length=322bp
MRRHDVFDFLDAGGEVEPKQTCPHIHSSSHLSLTPDDLLFSIQAGQCGVC
KSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQ
STGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSD
LSVWCYICGSYVKHDRLLPLLVRAEALKFSTPEKVMLLEGAQTRFRTGIV
IPQSLTEDIPGSKSTPIQELFDHLKSRSLLAKMIPFHDLNEARACEGLQS
VLVLERGSQASDSISDRTEAGSKNSVARKLRDRIQKAILEKDELTVVRVG
RKEVEEGVESLESCLRLMLSSY back to topmRNA from alignment at CM002458.1:1359259..1360817+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2275 ID=rna2275|Name=rna2275|organism=Nannochloropsis gaditana|type=mRNA|length=1559bp|location=Sequence derived from alignment at CM002458.1:1359259..1360817+ (Nannochloropsis gaditana)
ATCTGAATGGCCGCACATTATTCTTATACCATATACACACGtcatttcct
ctctttggATCGATCGTTAGGTCCCCAAGATGCGGAGGCACGACGTTTTT
GACTTCCTCGATgctggaggggaggtagagcCCAAACAGACTTGCCCCCA
CATTCACAGCTCAAGTCATTTGAGCCTGACACCTGATGATCTACTCTTCT
CCATCCAAGCTGGTCAATGTGGTGTCTGCAAGAGCAGGATGGAGCCATGG
GTTTGTCTCGGCTGCAACGCTGTACATTGCTCTCGCTACGTGAACGCTGA
TGCTGAGGCGCACTTTTTTGCTTCCCTCACAGCTACGTCAGAAAAGAGAA
GCCTTCATTTTGAGCGCCGTGGAGACCAGTCGACTGGTTTTGTGGACTCA
TTTATCTCAATCCACAAGGAGTTGACAAATCGAAAAGCAGGGGTGGGCGA
CGTCAAAGCGGAAGTGATGGAGAACGTAGAAAGCGAGAATGCGAGTGAGG
GTCATGGATTAGCTTTGTCGCTGAGTGACTTGTCTGTCTGGTGTTATATT
TGTGGAAGCTACGTCAAACACGATAGACTCTTACCTCTCCTTGTACGAGC
AGAAGCCCTCAAATTCTCAACGCCAGAGAAAGTCATGCTTCTGGAGGGTG
CTCAGACACGCTTTAGGACGGGGATCGTCATTCCGCAAAGCCTGACCGAA
GATATTCCCGGCTCAAAGTCGACACCAATTCAAGAGCTCTTCGATCATCT
CAAGAGTAGAAGTCTGCTGGCGAAAATGATCCCGTTCCACGACCTTAATG
AGGCCCGAGCTTGTGAAGGTTTGCAGAGCGTACTCGTGTTGGAGAGGGGA
TCTCAAGCAAGTGACTCCATATCAGATCGGACAGAGGCTGGAAGTAAGAA
CTCTGTCGCCCGTAAATTGAGAGATCGTATTCAAAAGGCTATTTTGGAAA
AAGACGAATTGACGGTCGTTCGAgtaggaagaaaggaggtggaggaaggc
gttGAAAGCCTGGAGTCCTGTTTAAGGCTTATGCTTTCTTCTTATTGATA
GCGATCCTGCCTTTGGCGGTAAGATTTCAATCAACAATGCATATCTATAA
TGAGAATGAGAATATCTCTTAACCACTACGAAGCTACGCAGTTTTAATGT
AGGTATTAGTTTCGGTGGATTAAGTGACATCGATCGCAAACGTCCACCCA
CAGCTGCAATCAATCGATACCCTCGATGCTTGTTATGAATATTGCTCTCT
CAATGCGGGATAAGAGacgccttttttcttcagctggaatacCGTGACCC
GCCAGTGCTATTGCTGCGTTGCGGTGTCCTTTATCTTCGATCCTGATTCC
AGTGTATATGAGGTGGTTGTGGCCAAGACACTGTTACCCACACTTTTGCA
GAGGAGATTTCGTAATTAAGTCCTAGGAATAGTGTATGGTGTGTTTGATT
GAGGGATAGGATAAAGGCGCGAGTAATCATGTCTATGGCTGAGTGTTCAA
AGAAGATCCATGTTCCTAATGATGGAAATGGCAAAGAAAAACATTTTTTC
AGAtagata back to topCoding sequence (CDS) from alignment at CM002458.1:1359259..1360817+ >rna2275 ID=rna2275|Name=rna2275|organism=Nannochloropsis gaditana|type=CDS|length=969bp|location=Sequence derived from alignment at CM002458.1:1359259..1360817+ (Nannochloropsis gaditana)
ATGCGGAGGCACGACGTTTTTGACTTCCTCGATgctggaggggaggtaga
gcCCAAACAGACTTGCCCCCACATTCACAGCTCAAGTCATTTGAGCCTGA
CACCTGATGATCTACTCTTCTCCATCCAAGCTGGTCAATGTGGTGTCTGC
AAGAGCAGGATGGAGCCATGGGTTTGTCTCGGCTGCAACGCTGTACATTG
CTCTCGCTACGTGAACGCTGATGCTGAGGCGCACTTTTTTGCTTCCCTCA
CAGCTACGTCAGAAAAGAGAAGCCTTCATTTTGAGCGCCGTGGAGACCAG
TCGACTGGTTTTGTGGACTCATTTATCTCAATCCACAAGGAGTTGACAAA
TCGAAAAGCAGGGGTGGGCGACGTCAAAGCGGAAGTGATGGAGAACGTAG
AAAGCGAGAATGCGAGTGAGGGTCATGGATTAGCTTTGTCGCTGAGTGAC
TTGTCTGTCTGGTGTTATATTTGTGGAAGCTACGTCAAACACGATAGACT
CTTACCTCTCCTTGTACGAGCAGAAGCCCTCAAATTCTCAACGCCAGAGA
AAGTCATGCTTCTGGAGGGTGCTCAGACACGCTTTAGGACGGGGATCGTC
ATTCCGCAAAGCCTGACCGAAGATATTCCCGGCTCAAAGTCGACACCAAT
TCAAGAGCTCTTCGATCATCTCAAGAGTAGAAGTCTGCTGGCGAAAATGA
TCCCGTTCCACGACCTTAATGAGGCCCGAGCTTGTGAAGGTTTGCAGAGC
GTACTCGTGTTGGAGAGGGGATCTCAAGCAAGTGACTCCATATCAGATCG
GACAGAGGCTGGAAGTAAGAACTCTGTCGCCCGTAAATTGAGAGATCGTA
TTCAAAAGGCTATTTTGGAAAAAGACGAATTGACGGTCGTTCGAgtagga
agaaaggaggtggaggaaggcgttGAAAGCCTGGAGTCCTGTTTAAGGCT
TATGCTTTCTTCTTATTGA back to top
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