EWM28406.1, cds2267 (CDS) Nannochloropsis gaditana

Overview
NameEWM28406.1
Unique Namecds2267
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1359338..1360306 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28406.1
Productubiquitin carboxyl-terminal hydrolase 3
Orig transcript idgnl|cribi|Naga_100088g2.1225.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1359338..1360306 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005488binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR000286His_deacetylse
IPR013083Znf_RING/FYVE/PHD
IPR001607Znf_UBP
Homology
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|585110791|gb|EWM28406.1| (ubiquitin carboxyl-terminal hydrolase 3 [Nannochloropsis gaditana])

HSP 1 Score: 660.988 bits (1704), Expect = 0.000e+0
Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0
Query:    1 MRRHDVFDFLDAGGEVEPKQTCPHIHSSSHLSLTPDDLLFSIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVRAEALKFSTPEKVMLLEGAQTRFRTGIVIPQSLTEDIPGSKSTPIQELFDHLKSRSLLAKMIPFHDLNEARACEGLQSVLVLERGSQASDSISDRTEAGSKNSVARKLRDRIQKAILEKDELTVVRVGRKEVEEGVESLESCLRLMLSSY 322
            MRRHDVFDFLDAGGEVEPKQTCPHIHSSSHLSLTPDDLLFSIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVRAEALKFSTPEKVMLLEGAQTRFRTGIVIPQSLTEDIPGSKSTPIQELFDHLKSRSLLAKMIPFHDLNEARACEGLQSVLVLERGSQASDSISDRTEAGSKNSVARKLRDRIQKAILEKDELTVVRVGRKEVEEGVESLESCLRLMLSSY
Sbjct:    1 MRRHDVFDFLDAGGEVEPKQTCPHIHSSSHLSLTPDDLLFSIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVRAEALKFSTPEKVMLLEGAQTRFRTGIVIPQSLTEDIPGSKSTPIQELFDHLKSRSLLAKMIPFHDLNEARACEGLQSVLVLERGSQASDSISDRTEAGSKNSVARKLRDRIQKAILEKDELTVVRVGRKEVEEGVESLESCLRLMLSSY 322          
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|1001604761|gb|KXS08778.1| (hypothetical protein M427DRAFT_76193 [Gonapodya prolifera JEL478])

HSP 1 Score: 65.4698 bits (158), Expect = 3.415e-9
Identity = 50/203 (24.63%), Postives = 73/203 (35.96%), Query Frame = 0
Query:   11 DAGGEVEPKQTCPHIHSSSHLSLTPDDLLFSIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVRAEALKFSTPEKVMLLEGAQTRFRTGIVIPQSLTEDIPGSK 213
            D    + PK  CPH+H +  L    D +  ++    C VC    E W+CL C  V CSRYVN+   +HF +S                                  +     G           ++     H +A S +DLS WC+ CG Y++ D L P        KF       +L G+      G  +  +   D+P  K
Sbjct:    6 DQWFNIVPKLNCPHVHDAVFLR---DSVSIALDV-PCSVCTDTSENWICLSCYDVFCSRYVNSHMLSHFESS------------------------KLCGSSLSAASTSGSSGSATTATASTATADQTGHPHCVAASFTDLSFWCFECGEYIESDVLRPFHTALHVAKFD------VLPGSDISTGGGPSLGANTGTDVPRDK 174          
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|194374925|dbj|BAG62577.1| (unnamed protein product [Homo sapiens])

HSP 1 Score: 62.3882 bits (150), Expect = 2.509e-8
Identity = 45/153 (29.41%), Postives = 64/153 (41.83%), Query Frame = 0
Query:   22 CPHIHSSSHLSLTPDDLLF---SIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLL 171
            CPH+ SS  + + PD   F   S  +  C VC+S   PWVCL C++VHC RYVN  A+ H+  +                                LTN K      K+E  + V+       H + +  S  S +CY C  +V +D  L L+
Sbjct:    3 CPHLSSS--VCIAPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYEDAQVP-----------------------------LTNHK------KSEKQDKVQ-------HTVCMDCSSYSTYCYRCDDFVVNDTKLGLV 111          
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|126277020|ref|XP_001366252.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 isoform X1 [Monodelphis domestica])

HSP 1 Score: 65.4698 bits (158), Expect = 3.161e-8
Identity = 49/156 (31.41%), Postives = 67/156 (42.95%), Query Frame = 0
Query:   22 CPHIHSSSHLSLTPDDLLF---SIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVRA 174
            CPH+ SS  + + PD   F   S  +  C VC+S   PWVCL C++VHC RYVN  A+ H+                          D+ IS    LTN K      K E  E V+       H + +  S  S +CY C  +V +D  L L+ + 
Sbjct:    3 CPHLSSS--VCIVPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHY-------------------------EDAQIS----LTNHK------KTEKQEKVQ-------HTVCMDCSSYSTYCYRCDDFVVNDTKLGLVQKV 114          
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|684392522|ref|XP_009170313.1| (hypothetical protein T265_06715 [Opisthorchis viverrini] >gi|663049934|gb|KER25965.1| hypothetical protein T265_06715 [Opisthorchis viverrini])

HSP 1 Score: 65.855 bits (159), Expect = 3.917e-8
Identity = 51/153 (33.33%), Postives = 72/153 (47.06%), Query Frame = 0
Query:   16 VEPKQTCPHIHS-SSHLSLTPDDLLFSIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRL 167
            V P   CPH+ S  ++    P+     I+   C  C ++ E WVCL C +V C RY N+    HF    T+T     L F    D S+   +    +H EL     G G      M  +E  +A++ H + LS +DLS WCY C SYV ++ L
Sbjct: 1227 VTPLSWCPHLTSVHNNPEWNPN-----IRE-TCNRCTNQTENWVCLTCYSVFCGRYANSHMVEHF----TSTRHPLVLSF---ADLSSWCYECEAYVHNEL-----GCGRYANSHM--LEHFSATQ-HPIVLSFADLSTWCYQCESYVNNEVL 1358          
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|617554450|ref|XP_007534059.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 isoform X1 [Erinaceus europaeus])

HSP 1 Score: 63.929 bits (154), Expect = 9.397e-8
Identity = 47/156 (30.13%), Postives = 67/156 (42.95%), Query Frame = 0
Query:   22 CPHIHSSSHLSLTPDDLLFSIQAGQ---CGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVRA 174
            CPH+ SS  + + PD   F + +     C VC+S   PWVCL C++VHC RYVN  A+ H                         + D+ I     LTN K      K+E  E V+       H + +  S  S +CY C  +V +D  L L+ + 
Sbjct:    3 CPHLSSS--VCIAPDSAKFPLGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKH-------------------------YEDAQIP----LTNHK------KSEKQEKVQ-------HTVCMDCSSYSTYCYRCDDFVVNDTKLGLVQKV 114          
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|478494756|ref|XP_004421726.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 isoform X1 [Ceratotherium simum simum])

HSP 1 Score: 63.929 bits (154), Expect = 9.569e-8
Identity = 46/155 (29.68%), Postives = 66/155 (42.58%), Query Frame = 0
Query:   22 CPHIHSSSHLSLTPDDLLF---SIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVR 173
            CPH+ SS  + + PD   F   S  +  C VC+S   PWVCL C++VHC RYVN  A+ H+  + T                              LTN K      K+E  + V+       H + +  S  S +CY C  +V +D  L L+ +
Sbjct:    3 CPHLSSS--VCIVPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYEDAQTP-----------------------------LTNHK------KSEKQDKVQ-------HTVCMDCSSYSTYCYRCDDFVVNDTKLGLVQK 113          
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|156120893|ref|NP_001095593.1| (ubiquitin carboxyl-terminal hydrolase 3 [Bos taurus] >gi|151553627|gb|AAI48999.1| USP3 protein [Bos taurus] >gi|296483218|tpg|DAA25333.1| TPA: ubiquitin thiolesterase 3 [Bos taurus])

HSP 1 Score: 63.1586 bits (152), Expect = 1.162e-7
Identity = 46/155 (29.68%), Postives = 64/155 (41.29%), Query Frame = 0
Query:   22 CPHIHSSSHLSLTPDDLLF---SIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVR 173
            CPH+ SS  + + PD   F   S  +  C VC+S   PWVCL C++VHC RYVN  A+ H                         + D+ I     LTN K      KA+             H + +  S  S +CY C  +V +D  L L+ +
Sbjct:    3 CPHLSSS--VCIAPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKH-------------------------YEDAQI----PLTNHKKSEKQEKAQ-------------HTVCMDCSSYSTYCYRCDDFVVNDTKLGLVQK 113          
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|291402890|ref|XP_002718220.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 isoform X1 [Oryctolagus cuniculus])

HSP 1 Score: 63.929 bits (154), Expect = 1.222e-7
Identity = 47/155 (30.32%), Postives = 67/155 (43.23%), Query Frame = 0
Query:   22 CPHIHSSSHLSLTPDDLLF---SIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVR 173
            CPH+ SS  + + PD   F   S  +  C VC+S   PWVCL C++VHC RYVN  A+ H                         + D+ I     LTN K      K+E  E ++       H + +  S  S +CY C  +V +D  L L+ +
Sbjct:    3 CPHLSSS--VCIAPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKH-------------------------YEDAQIP----LTNHK------KSEKQEKIQ-------HTVCMDCSSYSTYCYRCDDFVVNDTKLGLVQK 113          
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|504154492|ref|XP_004589203.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like isoform X1 [Ochotona princeps])

HSP 1 Score: 63.5438 bits (153), Expect = 1.268e-7
Identity = 48/156 (30.77%), Postives = 67/156 (42.95%), Query Frame = 0
Query:   22 CPHIHSSSHLSLTPDDLLF---SIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVRA 174
            CPH+ SS  + + PD   F   S  +  C VC+S   PWVCL C++VHC RYVN  A+ H                         + D+ I     LTN K      K+E  E V+       H + +  S  S +CY C  +V +D  L L+ + 
Sbjct:    3 CPHLSSS--VCIAPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKH-------------------------YEDAQIP----LTNHK------KSEKQEKVQ-------HTVCMDCSSYSTFCYRCDDFVVNDTKLGLVQKV 114          
The following BLAST results are available for this feature:
BLAST of EWM28406.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110791|gb|EWM28406.1|0.000e+0100.00ubiquitin carboxyl-terminal hydrolase 3 [Nannochlo... [more]
gi|1001604761|gb|KXS08778.1|3.415e-924.63hypothetical protein M427DRAFT_76193 [Gonapodya pr... [more]
gi|194374925|dbj|BAG62577.1|2.509e-829.41unnamed protein product [Homo sapiens][more]
gi|126277020|ref|XP_001366252.1|3.161e-831.41PREDICTED: ubiquitin carboxyl-terminal hydrolase 3... [more]
gi|684392522|ref|XP_009170313.1|3.917e-833.33hypothetical protein T265_06715 [Opisthorchis vive... [more]
gi|617554450|ref|XP_007534059.1|9.397e-830.13PREDICTED: ubiquitin carboxyl-terminal hydrolase 3... [more]
gi|478494756|ref|XP_004421726.1|9.569e-829.68PREDICTED: ubiquitin carboxyl-terminal hydrolase 3... [more]
gi|156120893|ref|NP_001095593.1|1.162e-729.68ubiquitin carboxyl-terminal hydrolase 3 [Bos tauru... [more]
gi|291402890|ref|XP_002718220.1|1.222e-730.32PREDICTED: ubiquitin carboxyl-terminal hydrolase 3... [more]
gi|504154492|ref|XP_004589203.1|1.268e-730.77PREDICTED: ubiquitin carboxyl-terminal hydrolase 3... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2275rna2275Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications