EWM28406.1, cds2267 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|585110791|gb|EWM28406.1| (ubiquitin carboxyl-terminal hydrolase 3 [Nannochloropsis gaditana]) HSP 1 Score: 660.988 bits (1704), Expect = 0.000e+0 Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0 Query: 1 MRRHDVFDFLDAGGEVEPKQTCPHIHSSSHLSLTPDDLLFSIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVRAEALKFSTPEKVMLLEGAQTRFRTGIVIPQSLTEDIPGSKSTPIQELFDHLKSRSLLAKMIPFHDLNEARACEGLQSVLVLERGSQASDSISDRTEAGSKNSVARKLRDRIQKAILEKDELTVVRVGRKEVEEGVESLESCLRLMLSSY 322 MRRHDVFDFLDAGGEVEPKQTCPHIHSSSHLSLTPDDLLFSIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVRAEALKFSTPEKVMLLEGAQTRFRTGIVIPQSLTEDIPGSKSTPIQELFDHLKSRSLLAKMIPFHDLNEARACEGLQSVLVLERGSQASDSISDRTEAGSKNSVARKLRDRIQKAILEKDELTVVRVGRKEVEEGVESLESCLRLMLSSY Sbjct: 1 MRRHDVFDFLDAGGEVEPKQTCPHIHSSSHLSLTPDDLLFSIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVRAEALKFSTPEKVMLLEGAQTRFRTGIVIPQSLTEDIPGSKSTPIQELFDHLKSRSLLAKMIPFHDLNEARACEGLQSVLVLERGSQASDSISDRTEAGSKNSVARKLRDRIQKAILEKDELTVVRVGRKEVEEGVESLESCLRLMLSSY 322
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|1001604761|gb|KXS08778.1| (hypothetical protein M427DRAFT_76193 [Gonapodya prolifera JEL478]) HSP 1 Score: 65.4698 bits (158), Expect = 3.415e-9 Identity = 50/203 (24.63%), Postives = 73/203 (35.96%), Query Frame = 0 Query: 11 DAGGEVEPKQTCPHIHSSSHLSLTPDDLLFSIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVRAEALKFSTPEKVMLLEGAQTRFRTGIVIPQSLTEDIPGSK 213 D + PK CPH+H + L D + ++ C VC E W+CL C V CSRYVN+ +HF +S + G ++ H +A S +DLS WC+ CG Y++ D L P KF +L G+ G + + D+P K Sbjct: 6 DQWFNIVPKLNCPHVHDAVFLR---DSVSIALDV-PCSVCTDTSENWICLSCYDVFCSRYVNSHMLSHFESS------------------------KLCGSSLSAASTSGSSGSATTATASTATADQTGHPHCVAASFTDLSFWCFECGEYIESDVLRPFHTALHVAKFD------VLPGSDISTGGGPSLGANTGTDVPRDK 174
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|194374925|dbj|BAG62577.1| (unnamed protein product [Homo sapiens]) HSP 1 Score: 62.3882 bits (150), Expect = 2.509e-8 Identity = 45/153 (29.41%), Postives = 64/153 (41.83%), Query Frame = 0 Query: 22 CPHIHSSSHLSLTPDDLLF---SIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLL 171 CPH+ SS + + PD F S + C VC+S PWVCL C++VHC RYVN A+ H+ + LTN K K+E + V+ H + + S S +CY C +V +D L L+ Sbjct: 3 CPHLSSS--VCIAPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYEDAQVP-----------------------------LTNHK------KSEKQDKVQ-------HTVCMDCSSYSTYCYRCDDFVVNDTKLGLV 111
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|126277020|ref|XP_001366252.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 isoform X1 [Monodelphis domestica]) HSP 1 Score: 65.4698 bits (158), Expect = 3.161e-8 Identity = 49/156 (31.41%), Postives = 67/156 (42.95%), Query Frame = 0 Query: 22 CPHIHSSSHLSLTPDDLLF---SIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVRA 174 CPH+ SS + + PD F S + C VC+S PWVCL C++VHC RYVN A+ H+ D+ IS LTN K K E E V+ H + + S S +CY C +V +D L L+ + Sbjct: 3 CPHLSSS--VCIVPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHY-------------------------EDAQIS----LTNHK------KTEKQEKVQ-------HTVCMDCSSYSTYCYRCDDFVVNDTKLGLVQKV 114
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|684392522|ref|XP_009170313.1| (hypothetical protein T265_06715 [Opisthorchis viverrini] >gi|663049934|gb|KER25965.1| hypothetical protein T265_06715 [Opisthorchis viverrini]) HSP 1 Score: 65.855 bits (159), Expect = 3.917e-8 Identity = 51/153 (33.33%), Postives = 72/153 (47.06%), Query Frame = 0 Query: 16 VEPKQTCPHIHS-SSHLSLTPDDLLFSIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRL 167 V P CPH+ S ++ P+ I+ C C ++ E WVCL C +V C RY N+ HF T+T L F D S+ + +H EL G G M +E +A++ H + LS +DLS WCY C SYV ++ L Sbjct: 1227 VTPLSWCPHLTSVHNNPEWNPN-----IRE-TCNRCTNQTENWVCLTCYSVFCGRYANSHMVEHF----TSTRHPLVLSF---ADLSSWCYECEAYVHNEL-----GCGRYANSHM--LEHFSATQ-HPIVLSFADLSTWCYQCESYVNNEVL 1358
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|617554450|ref|XP_007534059.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 isoform X1 [Erinaceus europaeus]) HSP 1 Score: 63.929 bits (154), Expect = 9.397e-8 Identity = 47/156 (30.13%), Postives = 67/156 (42.95%), Query Frame = 0 Query: 22 CPHIHSSSHLSLTPDDLLFSIQAGQ---CGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVRA 174 CPH+ SS + + PD F + + C VC+S PWVCL C++VHC RYVN A+ H + D+ I LTN K K+E E V+ H + + S S +CY C +V +D L L+ + Sbjct: 3 CPHLSSS--VCIAPDSAKFPLGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKH-------------------------YEDAQIP----LTNHK------KSEKQEKVQ-------HTVCMDCSSYSTYCYRCDDFVVNDTKLGLVQKV 114
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|478494756|ref|XP_004421726.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 isoform X1 [Ceratotherium simum simum]) HSP 1 Score: 63.929 bits (154), Expect = 9.569e-8 Identity = 46/155 (29.68%), Postives = 66/155 (42.58%), Query Frame = 0 Query: 22 CPHIHSSSHLSLTPDDLLF---SIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVR 173 CPH+ SS + + PD F S + C VC+S PWVCL C++VHC RYVN A+ H+ + T LTN K K+E + V+ H + + S S +CY C +V +D L L+ + Sbjct: 3 CPHLSSS--VCIVPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYEDAQTP-----------------------------LTNHK------KSEKQDKVQ-------HTVCMDCSSYSTYCYRCDDFVVNDTKLGLVQK 113
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|156120893|ref|NP_001095593.1| (ubiquitin carboxyl-terminal hydrolase 3 [Bos taurus] >gi|151553627|gb|AAI48999.1| USP3 protein [Bos taurus] >gi|296483218|tpg|DAA25333.1| TPA: ubiquitin thiolesterase 3 [Bos taurus]) HSP 1 Score: 63.1586 bits (152), Expect = 1.162e-7 Identity = 46/155 (29.68%), Postives = 64/155 (41.29%), Query Frame = 0 Query: 22 CPHIHSSSHLSLTPDDLLF---SIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVR 173 CPH+ SS + + PD F S + C VC+S PWVCL C++VHC RYVN A+ H + D+ I LTN K KA+ H + + S S +CY C +V +D L L+ + Sbjct: 3 CPHLSSS--VCIAPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKH-------------------------YEDAQI----PLTNHKKSEKQEKAQ-------------HTVCMDCSSYSTYCYRCDDFVVNDTKLGLVQK 113
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|291402890|ref|XP_002718220.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 3 isoform X1 [Oryctolagus cuniculus]) HSP 1 Score: 63.929 bits (154), Expect = 1.222e-7 Identity = 47/155 (30.32%), Postives = 67/155 (43.23%), Query Frame = 0 Query: 22 CPHIHSSSHLSLTPDDLLF---SIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVR 173 CPH+ SS + + PD F S + C VC+S PWVCL C++VHC RYVN A+ H + D+ I LTN K K+E E ++ H + + S S +CY C +V +D L L+ + Sbjct: 3 CPHLSSS--VCIAPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKH-------------------------YEDAQIP----LTNHK------KSEKQEKIQ-------HTVCMDCSSYSTYCYRCDDFVVNDTKLGLVQK 113
BLAST of EWM28406.1 vs. NCBI_GenBank
Match: gi|504154492|ref|XP_004589203.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like isoform X1 [Ochotona princeps]) HSP 1 Score: 63.5438 bits (153), Expect = 1.268e-7 Identity = 48/156 (30.77%), Postives = 67/156 (42.95%), Query Frame = 0 Query: 22 CPHIHSSSHLSLTPDDLLF---SIQAGQCGVCKSRMEPWVCLGCNAVHCSRYVNADAEAHFFASLTATSEKRSLHFERRGDQSTGFVDSFISIHKELTNRKAGVGDVKAEVMENVESENASEGHGLALSLSDLSVWCYICGSYVKHDRLLPLLVRA 174 CPH+ SS + + PD F S + C VC+S PWVCL C++VHC RYVN A+ H + D+ I LTN K K+E E V+ H + + S S +CY C +V +D L L+ + Sbjct: 3 CPHLSSS--VCIAPDSAKFPNGSPSSWCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKH-------------------------YEDAQIP----LTNHK------KSEKQEKVQ-------HTVCMDCSSYSTFCYRCDDFVVNDTKLGLVQKV 114 The following BLAST results are available for this feature:
BLAST of EWM28406.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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