rna2274, rna2274 (mRNA) Nannochloropsis gaditana

Overview
Namerna2274
Unique Namerna2274
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1155
Alignment locationCM002458.1:1356472..1358452 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100088g4.1234.mrna
Orig protein idgnl|cribi|Naga_100088g4.1234
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1356472..1358452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100088g4gene2174Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2274rna2274-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28415.1cds2266Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2274 ID=rna2274|Name=rna2274|organism=Nannochloropsis gaditana|type=mRNA|length=1155bp
CGGTCGCCCCCTGGCCTTGGGAGCTTGATGATGCTTTCAACCCTCTTCAA
AGTTGTGCATGACCTCGAATTTCCAAGCGATCATACCGTCGGCTTTTTCA
AAGCCAGTGATGATGACTGCCATTACTGAAGGGCGGGGAGCCCAAGGCCG
TGCTCGTACGTTTCCTTCACCCGCCCTTTTCTAACGCATGCATCCTGTCC
CCGAAATCGTGCACAAGCCAGAGCGAAGCTATGGGAAATTTCGCAGGCAA
GGATGATAGCGGCGAGATGCGGGAAGGACGGGGAGGGAGCGGTTTGGACG
AAAGCCAAGGAAAGATTCCACCGCCCACCGAATTTCACCATCGCCGGGAA
CCAGGGGGGCGTCCCGGAGGACGAGACGGTGGATATGGTGGGGAGGAAGG
AGGTTCTGGGATCGGAGGAGCGCACACACCGACGAGCGTAGGTCCTGGAC
CGCCGTCTTCAGGGGCGCTGGTACTGACGGGGGCGGAGAGGGGCGCTGAG
GGGGCCGGGGACGAGATGGCAATTGACGGAGACGATAGAGAGGACGATGT
AGTGCCCACTGTCTTCCGGTGGGAGCATGGGGGCCGCCAGGTATATATTC
AAGGGACATTTAACAACTGGGAGCGGCAGATTCCCATGCATCGGAGCGGA
AATGACTTCATGTACATCCATAACCTGAAGCGCGGCAAGCATGCCTTCAA
GTTCATTGTCGACGATGAGTGGCGCTTCGCCCCCGATCAGCTCACGGTGG
CTGACGTGGAGGGTCGCATCAACAACTTCATCGACGTCACGCACTTCAAG
CCCTTCAACGAGGACTCCTCTACCCTCGACATCGCACGCAAAGAGGAGGA
GCTCTACGGCACAAGCTATCCGGATATAGAGGAGTACAGTGTGAAGGAGC
CCCCTCCACTGCCGCCCCACCTGCGTCACATCATCCTCAATAAGGTGCCA
AATGACAAGCATCCGCTTATCCTCCCTGTGCCGCAGCACGTTGCCGTCGA
CCATCTTTACTGTACTGCCATCAAGGACGGGATGATGGTTTTGGGGGTCA
CGCAGCGTTTTCGCATGAAGTTTGTCACAACTGTCTATTATTCGATGATG
CCTTGAGAAGAAATTTTGTCTAGAGCAAAGGAACAAACTACCACATAGCA
ACTTC
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protein sequence of rna2274

>rna2274-protein ID=rna2274-protein|Name=rna2274|organism=Nannochloropsis gaditana|type=polypeptide|length=429bp
MPLRFPPYSLLPAHPSRTQQQAEELAKLSSLRTQWAQEAEDLKAECETFR
SLYDSARAEAEKSKEEFIAVVEDQARSQKEMINAARLEAEQMQARVRELE
EEVDQGRSREEVRRQLERDLDVAHAALRQSQAVVQATEEARERVEVQSQR
EGVIHEAQLAEWMAKAAAVTSERKGLEARIEGLEKELAQAVEERRGKRVE
LEEAAEEIGRLREALEISERAVEEGRRKATREGEELRRAWREEKSEWDEK
IERLERQVQRTETEMKELRRERLVADERLAASEENTRHGVGEEARRLQER
VADLEEALEEERVRGIKVENDWKFVVRDLHRQLREPTPPERCPHADSMAP
GIGAEAEEMAATARDQSLRREERQEEDLRAMTLLREELEKVKLRSMLAIQ
KAERRADAYKSKCLELHERWKEGSVVGRL
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mRNA from alignment at CM002458.1:1356472..1358452+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2274 ID=rna2274|Name=rna2274|organism=Nannochloropsis gaditana|type=mRNA|length=1981bp|location=Sequence derived from alignment at CM002458.1:1356472..1358452+ (Nannochloropsis gaditana)
aTGCCTTCACATATTAACGGGTACTCGATATCTCATCGCGTAATAAATCA
CATAGGCGAAAGCTCAGGAAAGCCAAGGCGCGGTCGACAATCTATTTCTA
CACTTGCTCCTTTGCTTCGCGCCCAAGACTGCCGCAATTCGTCTGGCCTT
GCAAAAAAGTGCCCCTGGCGGACTCAGCACAAAATATAATGCCTCGCCAG
TCCACCAACACTACCTCAATCTTCTCTGGAAAACACCATCTTGCAAGCTT
GCGTCGAGAACGCCCTGCGTCGAACAAGCCTTCTACCTCGGGGTCCCCAC
GTTACCACAATCTCCTCAGCCGCCTAGTGGACCTCGAAGCTGCGCTAGAG
GTTGCCGCCCGAGAGCGTGCATGGGAAGAGAGCAGCTATAGGTCCCTGAA
AGAAAAATATGCCTCGACAAAAGCCGCTCTTGCGGAGCTTAAGGCAGAGA
AAATGGAGCTGGAAAAGCAGTCTGAGGCCACGATGGCGAAATGGCGAGCA
CATCATGATCGACAAGTGAAGGAGCTTGCCATTTTCCAGGTGATACAAAT
ATTGGTTTAGAATCTGGTGCAACTTGATAAGTGTATCCCAGCGTGAAGAT
TTGGCGTGTCATGCCCCTCCGATTTCCCCCCTATTCCCTTCTACCCGCAC
ATCCTTCCCGAACGCAGCAACAAGCCGAAGAGCTTGccaagctctcctcc
ctccgcacgcaATGGGCTCAAGAGGCTGAAGACTTGAAGGCTGAATGCGA
GACATTCCGTTCTCTCTACGACTCAGCGCGTGCAGAGGCTgaaaaaagca
aggaggagttCATCGCCGTcgtggaggaccaggcccGGAGCCAGAAGGAA
ATGATTAATGCTGCCCGCTTAGAGGCTGAGCAGATGCAGGCGCGTGTCCG
AgagcttgaagaggaagtaGATCAAGGTCGAAGCCGTGAGGAGGTCCGTC
GCCAGCTGGAAAGAGACCTGGACGTGGCGCAtgccgccctccgccagAGC
CAGGCGGTGGTACAAGCCACCGAAGAAGCACGAGAGCGCGTGGAAGTGCA
GTCGCAGCGGGAAGGTGTCATTCATGAGGCGCAGCTGGCAGAGTGGATGG
CCAAGGCCGCAGCAGTGACGAGTGAGCggaagggcctggaggcaCGCATC
GAGGGCTTGGAAAAGGAACTGGCTcaggcggtggaagagcgGCGCGGGAA
AAGAGTAGagctggaagaggcagcagaggaaATTGGCCGGCTGCGAGAAG
CATTGGAGATATCAGAACgtgcagtggaggaggggcggaggaaagcaacg
cgggagggggaagagttACGCCGGGCTTGGCGAGAGGAAAAATCTGAGTG
GGATGAGAAAATTGAAAGGCTAGAGCGGCAAGTGCAGAGAACAGAAACGG
AAATGAAGGAATTGAGACGAGAGAGGCTTGTGGCGGACGAGCGTCTCGCC
GCGAGTGAGGAAAACACTCGACacggggtcggggaggaggcacggCGACT
GCAAGAGCGGGTAGCTGATTTGGAGGAAGCATTAGAGGAAGAGCGCGTGC
GAGGCATCAAAGTCGAGAACGACTGGAAATTTGTGGTCAGGGATCTGCAC
AGACAGCTTCGGGAACCGACACCACCTGAAAGGTGCCCGCATGCGGACTC
GATGGCGCCGGGCATAGGTGCAGAAGCAGAGGAGATGGCAGCGACTGCGC
GCGACCAGAGTTtacggcgggaggaaaggcaagaggaggatctACGGGCG
ATGACCTTATTGAGAGAAGAGTTGGAAAAGGTCAAATTGAGGAGCATGCT
GGCGATCCAAAAGGCAGAGCGGCGCGCCGATGCATACAAGAGCAAATGCC
TGGAGTTGCATGAgcgatggaaggagggcagtgTGGTCGGAAGGTTGTAA
GAGGGCTGTAAATatgaagaagagagaaatCGTATAGATAAATGCTGGTT
AGATCAAGCAATACCAGGCGACACcaatttc
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Coding sequence (CDS) from alignment at CM002458.1:1356472..1358452+

>rna2274 ID=rna2274|Name=rna2274|organism=Nannochloropsis gaditana|type=CDS|length=1290bp|location=Sequence derived from alignment at CM002458.1:1356472..1358452+ (Nannochloropsis gaditana)
ATGCCCCTCCGATTTCCCCCCTATTCCCTTCTACCCGCACATCCTTCCCG
AACGCAGCAACAAGCCGAAGAGCTTGccaagctctcctccctccgcacgc
aATGGGCTCAAGAGGCTGAAGACTTGAAGGCTGAATGCGAGACATTCCGT
TCTCTCTACGACTCAGCGCGTGCAGAGGCTgaaaaaagcaaggaggagtt
CATCGCCGTcgtggaggaccaggcccGGAGCCAGAAGGAAATGATTAATG
CTGCCCGCTTAGAGGCTGAGCAGATGCAGGCGCGTGTCCGAgagcttgaa
gaggaagtaGATCAAGGTCGAAGCCGTGAGGAGGTCCGTCGCCAGCTGGA
AAGAGACCTGGACGTGGCGCAtgccgccctccgccagAGCCAGGCGGTGG
TACAAGCCACCGAAGAAGCACGAGAGCGCGTGGAAGTGCAGTCGCAGCGG
GAAGGTGTCATTCATGAGGCGCAGCTGGCAGAGTGGATGGCCAAGGCCGC
AGCAGTGACGAGTGAGCggaagggcctggaggcaCGCATCGAGGGCTTGG
AAAAGGAACTGGCTcaggcggtggaagagcgGCGCGGGAAAAGAGTAGag
ctggaagaggcagcagaggaaATTGGCCGGCTGCGAGAAGCATTGGAGAT
ATCAGAACgtgcagtggaggaggggcggaggaaagcaacgcgggaggggg
aagagttACGCCGGGCTTGGCGAGAGGAAAAATCTGAGTGGGATGAGAAA
ATTGAAAGGCTAGAGCGGCAAGTGCAGAGAACAGAAACGGAAATGAAGGA
ATTGAGACGAGAGAGGCTTGTGGCGGACGAGCGTCTCGCCGCGAGTGAGG
AAAACACTCGACacggggtcggggaggaggcacggCGACTGCAAGAGCGG
GTAGCTGATTTGGAGGAAGCATTAGAGGAAGAGCGCGTGCGAGGCATCAA
AGTCGAGAACGACTGGAAATTTGTGGTCAGGGATCTGCACAGACAGCTTC
GGGAACCGACACCACCTGAAAGGTGCCCGCATGCGGACTCGATGGCGCCG
GGCATAGGTGCAGAAGCAGAGGAGATGGCAGCGACTGCGCGCGACCAGAG
TTtacggcgggaggaaaggcaagaggaggatctACGGGCGATGACCTTAT
TGAGAGAAGAGTTGGAAAAGGTCAAATTGAGGAGCATGCTGGCGATCCAA
AAGGCAGAGCGGCGCGCCGATGCATACAAGAGCAAATGCCTGGAGTTGCA
TGAgcgatggaaggagggcagtgTGGTCGGAAGGTTGTAA
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Synonyms
Publications